Wall clock time and date at job start Sun Mar 29 2020 23:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47117 * 2 1 4 4 C 1.50698 * 109.46916 * 119.99905 * 2 1 3 5 5 H 1.07999 * 119.99874 * 120.00171 * 4 2 1 6 6 C 1.37878 * 119.99978 * 300.00250 * 4 2 1 7 7 N 1.31512 * 119.99932 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99943 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47053 * 60.00264 * 8 6 4 10 10 H 1.48508 * 109.47001 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47204 * 299.99756 * 8 6 4 12 12 N 1.46495 * 109.47201 * 239.99767 * 2 1 3 13 13 C 1.46502 * 120.00408 * 304.45372 * 12 2 1 14 14 C 1.34775 * 119.99969 * 124.45383 * 12 2 1 15 15 O 1.21285 * 120.00326 * 185.54379 * 14 12 2 16 16 C 1.50703 * 120.00154 * 5.53651 * 14 12 2 17 17 C 1.52995 * 109.63885 * 292.88155 * 16 14 12 18 18 C 1.53025 * 109.63850 * 53.30228 * 16 14 12 19 19 C 1.50073 * 110.14476 * 169.12047 * 18 16 14 20 20 C 1.29445 * 124.07683 * 342.86855 * 19 18 16 21 21 C 1.50066 * 124.07170 * 0.46905 * 20 19 18 22 22 C 1.53019 * 110.15328 * 342.86725 * 21 20 19 23 23 H 1.08997 * 109.47297 * 300.00272 * 1 2 3 24 24 H 1.09006 * 109.46851 * 60.00017 * 1 2 3 25 25 H 1.09001 * 109.47423 * 179.97438 * 1 2 3 26 26 H 0.97000 * 120.00253 * 180.02562 * 7 6 4 27 27 H 1.09002 * 109.47321 * 264.94059 * 13 12 2 28 28 H 1.09008 * 109.46902 * 24.93500 * 13 12 2 29 29 H 1.09001 * 109.47444 * 144.93564 * 13 12 2 30 30 H 1.09007 * 109.47014 * 184.79400 * 17 16 14 31 31 H 1.08996 * 109.47576 * 304.79722 * 17 16 14 32 32 H 1.09005 * 109.47317 * 64.80653 * 17 16 14 33 33 H 1.08997 * 109.36057 * 289.32968 * 18 16 14 34 34 H 1.08996 * 109.35933 * 48.91661 * 18 16 14 35 35 H 1.07995 * 117.95939 * 162.85006 * 19 18 16 36 36 H 1.07999 * 117.96079 * 180.44415 * 20 19 18 37 37 H 1.09003 * 109.35763 * 222.65508 * 21 20 19 38 38 H 1.09008 * 109.24852 * 103.01000 * 21 20 19 39 39 H 1.08996 * 109.64235 * 289.75525 * 22 21 20 40 40 H 1.08995 * 109.64315 * 169.11786 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6991 -0.2393 2.4827 7 7 0.9434 0.8302 2.6033 8 14 2.3211 -1.1203 4.0080 9 1 3.8062 -1.1208 4.0083 10 1 1.8266 -0.4198 5.2205 11 1 1.8256 -2.5202 4.0078 12 7 2.0183 -0.6906 -1.1961 13 6 1.5859 -2.0616 -1.4783 14 6 2.8655 -0.0648 -2.0369 15 8 3.1909 -0.5967 -3.0772 16 6 3.4085 1.2962 -1.6847 17 6 2.2736 2.3221 -1.6989 18 6 4.0445 1.2519 -0.2935 19 6 4.8171 2.5128 -0.0380 20 6 5.1891 3.3360 -0.9652 21 6 4.8909 3.1495 -2.4241 22 6 4.4868 1.6994 -2.6985 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 0.7093 1.1619 3.4843 27 1 2.3247 -2.7628 -1.0904 28 1 0.6242 -2.2451 -0.9991 29 1 1.4868 -2.1969 -2.5554 30 1 2.6820 3.3182 -1.5279 31 1 1.7724 2.2961 -2.6665 32 1 1.5578 2.0831 -0.9124 33 1 3.2621 1.1489 0.4583 34 1 4.7176 0.3968 -0.2310 35 1 5.0788 2.7482 0.9830 36 1 5.7484 4.2115 -0.6704 37 1 5.7781 3.3941 -3.0083 38 1 4.0750 3.8126 -2.7117 39 1 5.3551 1.0498 -2.5877 40 1 4.0888 1.6150 -3.7096 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001518825713.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:32:07 Heat of formation + Delta-G solvation = -13.131335 kcal Electronic energy + Delta-G solvation = -20230.484240 eV Core-core repulsion = 17431.893335 eV Total energy + Delta-G solvation = -2798.590905 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.25419 -37.35081 -35.70014 -32.65847 -31.93358 -30.39677 -29.16874 -26.69788 -26.29013 -25.28659 -23.14183 -21.88127 -20.75793 -18.33004 -16.95296 -16.70615 -16.09641 -15.35134 -14.90876 -14.42155 -14.30112 -13.92896 -13.36930 -13.00678 -12.84032 -12.72957 -12.40669 -11.92268 -11.83812 -11.52231 -11.37506 -11.22499 -11.14978 -11.04997 -10.84212 -10.67813 -10.51504 -10.36804 -10.17895 -9.92546 -9.67755 -9.14977 -8.76255 -8.56575 -8.36776 -7.58683 -6.19632 -4.27643 2.72846 3.21856 3.27276 3.29873 3.45897 4.03208 4.31086 5.02050 5.10496 5.13181 5.32767 5.52161 5.64018 5.72380 5.79878 5.87102 6.04862 6.10245 6.22654 6.25286 6.29458 6.33195 6.42822 6.46038 6.51338 6.63096 6.65053 6.73526 6.80346 6.82502 6.99787 7.09685 7.23112 7.39872 7.51157 7.69026 7.86274 8.11169 8.47973 8.76290 9.06874 9.40422 10.84026 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.020549 B = 0.009404 C = 0.007637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.284030 B = 2976.697195 C = 3665.257898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.229 3.771 3 H 0.086 0.914 4 C -0.527 4.527 5 H 0.060 0.940 6 C 0.068 3.932 7 N -0.887 5.887 8 Si 0.894 3.106 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.590 5.590 13 C 0.095 3.905 14 C 0.519 3.481 15 O -0.577 6.577 16 C -0.069 4.069 17 C -0.155 4.155 18 C -0.106 4.106 19 C -0.127 4.127 20 C -0.181 4.181 21 C -0.086 4.086 22 C -0.092 4.092 23 H 0.095 0.905 24 H 0.013 0.987 25 H 0.033 0.967 26 H 0.265 0.735 27 H 0.043 0.957 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.050 0.950 32 H 0.085 0.915 33 H 0.133 0.867 34 H 0.071 0.929 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.195 3.855 -4.568 6.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.129 3.871 3 H 0.103 0.897 4 C -0.566 4.566 5 H 0.078 0.922 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.203 1.203 12 N -0.320 5.320 13 C -0.049 4.049 14 C 0.307 3.693 15 O -0.459 6.459 16 C -0.072 4.072 17 C -0.212 4.212 18 C -0.143 4.143 19 C -0.146 4.146 20 C -0.199 4.199 21 C -0.123 4.123 22 C -0.130 4.130 23 H 0.114 0.886 24 H 0.032 0.968 25 H 0.052 0.948 26 H 0.075 0.925 27 H 0.062 0.938 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.103 0.897 33 H 0.151 0.849 34 H 0.090 0.910 35 H 0.119 0.881 36 H 0.113 0.887 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.247 3.685 -4.927 6.957 hybrid contribution 0.299 -0.549 1.119 1.282 sum 3.545 3.136 -3.808 6.075 Atomic orbital electron populations 1.22178 0.98315 0.99944 1.00889 1.19779 0.91461 0.94968 0.80908 0.89672 1.21334 1.31833 1.13329 0.90092 0.92168 1.24856 0.94773 0.94965 0.98862 1.69831 1.36059 1.22517 1.24125 0.86610 0.79342 0.79819 0.82042 1.20122 1.21190 1.20261 1.48189 1.44498 1.14232 1.25044 1.21367 0.99905 0.83621 0.99970 1.20461 0.78660 0.87125 0.83075 1.90564 1.61236 1.68479 1.25603 1.20633 0.96303 0.93030 0.97209 1.22224 0.97835 0.98499 1.02616 1.21157 1.01054 0.95399 0.96644 1.22163 0.97502 0.96284 0.98603 1.21910 1.02935 1.00119 0.94976 1.20459 1.00671 0.97084 0.94079 1.21403 0.97671 0.95419 0.98544 0.88635 0.96804 0.94801 0.92465 0.93843 0.91152 0.92656 0.91491 0.93116 0.89671 0.84943 0.91047 0.88098 0.88680 0.91705 0.91070 0.91863 0.91265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 8.75 37.16 0.33 -3.08 16 2 C 0.23 5.11 1.12 -69.09 -0.08 5.03 16 3 H 0.09 1.93 2.10 -51.93 -0.11 1.82 16 4 C -0.53 -12.88 7.24 -34.44 -0.25 -13.12 16 5 H 0.06 1.52 7.78 -52.49 -0.41 1.11 16 6 C 0.07 1.69 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -22.40 11.32 55.43 0.63 -21.77 16 8 Si 0.89 19.78 29.54 -169.99 -5.02 14.76 16 9 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 10 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 12 N -0.59 -12.64 2.74 -175.26 -0.48 -13.12 16 13 C 0.09 1.86 9.84 59.85 0.59 2.45 16 14 C 0.52 11.09 6.45 -10.98 -0.07 11.02 16 15 O -0.58 -13.46 15.49 5.55 0.09 -13.38 16 16 C -0.07 -1.27 0.50 -155.44 -0.08 -1.35 16 17 C -0.15 -2.68 7.66 37.16 0.28 -2.39 16 18 C -0.11 -2.02 4.25 -28.17 -0.12 -2.14 16 19 C -0.13 -2.09 9.46 -35.90 -0.34 -2.43 16 20 C -0.18 -2.63 9.18 -35.90 -0.33 -2.96 16 21 C -0.09 -1.19 5.48 -28.18 -0.15 -1.35 16 22 C -0.09 -1.53 4.41 -26.52 -0.12 -1.65 16 23 H 0.10 2.28 6.07 -51.93 -0.32 1.96 16 24 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.03 0.72 6.51 -51.93 -0.34 0.38 16 26 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 27 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.07 1.31 6.20 -51.92 -0.32 0.99 16 29 H 0.05 1.05 7.51 -51.93 -0.39 0.66 16 30 H 0.07 1.05 5.56 -51.93 -0.29 0.76 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.08 1.62 5.00 -51.93 -0.26 1.36 16 33 H 0.13 2.87 3.90 -51.93 -0.20 2.66 16 34 H 0.07 1.42 8.10 -51.93 -0.42 1.00 16 35 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 36 H 0.10 1.20 8.06 -52.49 -0.42 0.78 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.93 6.82 -51.92 -0.35 0.57 16 39 H 0.06 1.09 8.12 -51.93 -0.42 0.67 16 40 H 0.07 1.17 7.80 -51.93 -0.40 0.76 16 LS Contribution 298.50 15.07 4.50 4.50 Total: -1.00 -26.35 298.50 -6.63 -32.97 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -5.91 Total: 6.42 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: -0.43 Total: -10.39 kcal Atomic # 7 Polarization: -35.03 SS G_CDS: 0.15 Total: -34.89 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: 0.09 Total: -13.38 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -26.35 -6.63 -32.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518825713.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.843 kcal (2) G-P(sol) polarization free energy of solvation -26.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds