Wall clock time and date at job start Sun Mar 29 2020 23:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46903 * 109.47120 * 240.00492 * 2 1 3 13 13 C 1.46906 * 110.99973 * 84.99803 * 12 2 1 14 14 H 1.08995 * 109.84409 * 34.05197 * 13 12 2 15 15 C 1.53499 * 109.85570 * 272.97601 * 13 12 2 16 16 C 1.53562 * 107.20688 * 241.43334 * 15 13 12 17 17 C 1.54088 * 106.17021 * 342.27639 * 16 15 13 18 18 H 1.08999 * 115.00331 * 258.04368 * 17 16 15 19 19 C 1.53725 * 112.71818 * 120.76556 * 17 16 15 20 20 H 1.09000 * 115.85051 * 37.70032 * 19 17 16 21 21 O 1.44232 * 113.43886 * 174.71803 * 19 17 16 22 22 C 1.44412 * 105.33338 * 134.14070 * 21 19 17 23 23 C 1.54462 * 104.81107 * 319.32969 * 22 21 19 24 24 C 1.54542 * 104.12373 * 23.92371 * 23 22 21 25 25 H 1.09003 * 115.73576 * 129.89466 * 24 23 22 26 26 C 1.53318 * 109.85171 * 154.99913 * 13 12 2 27 27 H 1.09002 * 114.16876 * 264.04651 * 26 13 12 28 28 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 29 29 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 1.00904 * 110.99622 * 321.04878 * 12 2 1 33 33 H 1.09000 * 109.89491 * 0.83292 * 15 13 12 34 34 H 1.08998 * 109.89050 * 122.03597 * 15 13 12 35 35 H 1.08996 * 110.11465 * 223.10228 * 16 15 13 36 36 H 1.08999 * 110.16669 * 101.47827 * 16 15 13 37 37 H 1.09001 * 110.37379 * 200.49626 * 22 21 19 38 38 H 1.09003 * 110.46512 * 78.20631 * 22 21 19 39 39 H 1.08996 * 110.49936 * 265.26122 * 23 22 21 40 40 H 1.09004 * 110.61216 * 142.63792 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0197 -0.6924 -1.1995 13 6 2.0824 0.2228 -2.3469 14 1 2.3480 1.2239 -2.0076 15 6 0.7250 0.2552 -3.0629 16 6 0.9546 -0.2494 -4.4950 17 6 2.4706 -0.1430 -4.7495 18 1 2.7779 0.7130 -5.3502 19 6 3.1111 -1.4973 -5.0940 20 1 2.5121 -2.1618 -5.7167 21 8 4.5045 -1.3982 -5.4532 22 6 5.1635 -2.4549 -4.7221 23 6 4.4996 -2.4437 -3.3275 24 6 3.1175 -1.7972 -3.5729 25 1 2.2625 -2.3410 -3.1712 26 6 3.1223 -0.2780 -3.3561 27 1 4.1040 0.1842 -3.2520 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 0.7089 1.1611 3.4845 32 1 1.4495 -1.4978 -1.4102 33 1 0.0188 -0.3968 -2.5487 34 1 0.3422 1.2754 -3.0860 35 1 0.4108 0.3748 -5.2040 36 1 0.6314 -1.2865 -4.5843 37 1 6.2304 -2.2487 -4.6362 38 1 5.0016 -3.4153 -5.2116 39 1 5.0842 -1.8423 -2.6313 40 1 4.3841 -3.4595 -2.9493 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001651494766.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:33:23 Heat of formation + Delta-G solvation = -20.609667 kcal Electronic energy + Delta-G solvation = -19504.967285 eV Core-core repulsion = 16706.052095 eV Total energy + Delta-G solvation = -2798.915190 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.27281 -37.51956 -35.07976 -32.40903 -31.70945 -30.11213 -28.78704 -25.87324 -25.26887 -24.71658 -22.55150 -21.47957 -20.27895 -19.81484 -18.18066 -16.64950 -15.99620 -15.73205 -15.19925 -14.96791 -14.65150 -14.10447 -13.59062 -13.25746 -12.87960 -12.69200 -12.36101 -11.85638 -11.77728 -11.69760 -11.34801 -11.07577 -10.91635 -10.84686 -10.69137 -10.61901 -10.46245 -10.27304 -10.08787 -9.93696 -9.77503 -9.71417 -9.31901 -8.85733 -8.33309 -7.15771 -5.95932 -3.98950 3.33069 3.39630 3.44088 3.77920 4.42323 4.47514 4.67836 4.79339 4.97657 5.10423 5.21692 5.33292 5.35573 5.37661 5.44348 5.59560 5.65465 5.79677 5.81444 5.89206 5.91677 6.03364 6.06552 6.18453 6.19769 6.31687 6.48987 6.52465 6.57457 6.71202 6.77126 6.89616 7.01664 7.14626 7.43447 7.77895 7.92618 8.32720 8.59759 8.68044 9.08664 9.66376 11.10852 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.028858 B = 0.006003 C = 0.005174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.021365 B = 4663.226084 C = 5410.604119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.212 3.788 3 H 0.032 0.968 4 C -0.493 4.493 5 H 0.061 0.939 6 C 0.054 3.946 7 N -0.898 5.898 8 Si 0.895 3.105 9 H -0.283 1.283 10 H -0.274 1.274 11 H -0.288 1.288 12 N -0.672 5.672 13 C 0.092 3.908 14 H 0.072 0.928 15 C -0.150 4.150 16 C -0.101 4.101 17 C -0.112 4.112 18 H 0.087 0.913 19 C 0.049 3.951 20 H 0.082 0.918 21 O -0.364 6.364 22 C 0.047 3.953 23 C -0.144 4.144 24 C -0.106 4.106 25 H 0.107 0.893 26 C -0.077 4.077 27 H 0.093 0.907 28 H 0.011 0.989 29 H 0.024 0.976 30 H 0.086 0.914 31 H 0.259 0.741 32 H 0.324 0.676 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.087 0.913 38 H 0.054 0.946 39 H 0.081 0.919 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.410 -4.319 -14.205 15.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.104 3.896 3 H 0.050 0.950 4 C -0.532 4.532 5 H 0.079 0.921 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.724 3.276 9 H -0.209 1.209 10 H -0.199 1.199 11 H -0.214 1.214 12 N -0.301 5.301 13 C -0.019 4.019 14 H 0.090 0.910 15 C -0.189 4.189 16 C -0.139 4.139 17 C -0.131 4.131 18 H 0.106 0.894 19 C -0.009 4.009 20 H 0.100 0.900 21 O -0.283 6.283 22 C -0.030 4.030 23 C -0.181 4.181 24 C -0.125 4.125 25 H 0.125 0.875 26 C -0.096 4.096 27 H 0.111 0.889 28 H 0.030 0.970 29 H 0.044 0.956 30 H 0.104 0.896 31 H 0.068 0.932 32 H 0.141 0.859 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.105 0.895 38 H 0.072 0.928 39 H 0.100 0.900 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.116 -3.962 -14.002 14.882 hybrid contribution -0.821 -0.442 0.864 1.271 sum 2.295 -4.404 -13.138 14.045 Atomic orbital electron populations 1.22539 1.00871 0.98979 1.00714 1.19213 0.89519 0.94225 0.86627 0.95044 1.21183 1.30001 1.12318 0.89716 0.92065 1.24950 0.95428 0.95205 0.98997 1.69888 1.37479 1.23207 1.23221 0.86543 0.79208 0.79250 0.82637 1.20919 1.19936 1.21426 1.60805 1.57779 1.08398 1.03103 1.21883 0.91681 0.97085 0.91236 0.90969 1.22909 0.99563 1.01307 0.95161 1.21821 0.93736 1.01073 0.97269 1.23174 0.95042 0.96640 0.98281 0.89431 1.24180 0.83698 0.97653 0.95387 0.90002 1.88980 1.18592 1.52688 1.67995 1.23483 0.97666 0.90723 0.91125 1.22847 0.96413 1.01757 0.97120 1.23648 0.97851 0.96640 0.94368 0.87503 1.22986 0.99100 0.94630 0.92874 0.88865 0.96969 0.95639 0.89585 0.93161 0.85884 0.91072 0.92172 0.91976 0.91836 0.89459 0.92820 0.90035 0.90963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.03 8.31 37.16 0.31 -3.73 16 2 C 0.21 5.20 2.57 -68.87 -0.18 5.03 16 3 H 0.03 0.86 7.43 -51.93 -0.39 0.48 16 4 C -0.49 -13.54 8.84 -34.44 -0.30 -13.84 16 5 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 6 C 0.05 1.51 5.30 -17.82 -0.09 1.41 16 7 N -0.90 -25.72 11.32 55.43 0.63 -25.09 16 8 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 N -0.67 -13.59 5.47 -100.51 -0.55 -14.14 16 13 C 0.09 1.60 3.03 -67.29 -0.20 1.39 16 14 H 0.07 1.38 7.43 -51.93 -0.39 0.99 16 15 C -0.15 -2.26 5.13 -26.18 -0.13 -2.39 16 16 C -0.10 -1.27 6.09 -25.87 -0.16 -1.42 16 17 C -0.11 -1.49 4.91 -88.93 -0.44 -1.93 16 18 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 19 C 0.05 0.63 4.80 -25.28 -0.12 0.51 16 20 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 21 O -0.36 -5.15 11.20 -35.23 -0.39 -5.55 16 22 C 0.05 0.55 7.63 37.92 0.29 0.84 16 23 C -0.14 -1.85 6.67 -25.15 -0.17 -2.02 16 24 C -0.11 -1.47 3.59 -88.50 -0.32 -1.78 16 25 H 0.11 1.50 7.18 -51.93 -0.37 1.13 16 26 C -0.08 -1.17 3.80 -89.47 -0.34 -1.51 16 27 H 0.09 1.51 8.02 -51.93 -0.42 1.09 16 28 H 0.01 0.24 5.93 -51.93 -0.31 -0.07 16 29 H 0.02 0.57 8.13 -51.93 -0.42 0.15 16 30 H 0.09 2.28 6.07 -51.93 -0.32 1.96 16 31 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 32 H 0.32 6.25 6.98 -39.29 -0.27 5.98 16 33 H 0.07 1.13 6.05 -51.93 -0.31 0.82 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.74 7.71 -51.93 -0.40 0.34 16 37 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 1.16 7.94 -51.93 -0.41 0.74 16 40 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 301.50 15.07 4.54 4.54 Total: -1.00 -28.27 301.50 -9.16 -37.43 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -6.51 Total: 5.75 kcal Atomic # 6 Polarization: -17.59 SS G_CDS: -1.86 Total: -19.45 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: 0.08 Total: -39.23 kcal Atomic # 8 Polarization: -5.15 SS G_CDS: -0.39 Total: -5.55 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -28.27 -9.16 -37.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001651494766.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.821 kcal (2) G-P(sol) polarization free energy of solvation -28.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds