Wall clock time and date at job start Sun Mar 29 2020 23:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47099 * 2 1 4 4 C 1.50697 * 109.47355 * 240.00060 * 2 1 3 5 5 H 1.07996 * 120.00263 * 240.00547 * 4 2 1 6 6 C 1.37878 * 119.99851 * 59.99625 * 4 2 1 7 7 N 1.31518 * 120.00151 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00031 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46961 * 90.00235 * 8 6 4 10 10 H 1.48497 * 109.47210 * 210.00042 * 8 6 4 11 11 H 1.48500 * 109.46998 * 330.00489 * 8 6 4 12 12 N 1.46897 * 109.47252 * 119.99916 * 2 1 3 13 13 C 1.46897 * 110.99999 * 274.99949 * 12 2 1 14 14 H 1.08997 * 110.04786 * 326.38195 * 13 12 2 15 15 C 1.54244 * 110.02165 * 87.77467 * 13 12 2 16 16 C 1.54652 * 104.27882 * 142.53296 * 15 13 12 17 17 C 1.54666 * 102.87172 * 322.05721 * 16 15 13 18 18 H 1.09002 * 114.98040 * 269.51165 * 17 16 15 19 19 C 1.53695 * 114.28427 * 131.80546 * 17 16 15 20 20 H 1.09001 * 115.81267 * 38.04528 * 19 17 16 21 21 O 1.43539 * 112.79053 * 174.14444 * 19 17 16 22 22 C 1.42943 * 109.36716 * 122.31227 * 21 19 17 23 23 C 1.53737 * 107.98349 * 340.48618 * 22 21 19 24 24 C 1.53938 * 104.95635 * 2.12622 * 23 22 21 25 25 H 1.09001 * 115.40394 * 142.88287 * 24 23 22 26 26 C 1.53507 * 114.14562 * 280.61498 * 24 23 22 27 27 H 1.09001 * 115.64945 * 11.00885 * 26 24 23 28 28 H 1.08993 * 109.47175 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46600 * 300.00231 * 1 2 3 30 30 H 1.08998 * 109.46958 * 59.99286 * 1 2 3 31 31 H 0.96994 * 119.99932 * 179.97438 * 7 6 4 32 32 H 1.00901 * 110.99923 * 38.95223 * 12 2 1 33 33 H 1.09001 * 110.47824 * 261.32742 * 15 13 12 34 34 H 1.09002 * 110.48065 * 23.82590 * 15 13 12 35 35 H 1.09002 * 110.85794 * 203.63130 * 16 15 13 36 36 H 1.08997 * 110.53678 * 80.34075 * 16 15 13 37 37 H 1.08997 * 109.76479 * 100.12323 * 22 21 19 38 38 H 1.09004 * 109.76631 * 220.83934 * 22 21 19 39 39 H 1.09001 * 110.34457 * 243.25494 * 23 22 21 40 40 H 1.09004 * 110.34150 * 120.99693 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1203 -4.0079 9 1 1.3428 -2.1616 -4.4119 10 1 2.4865 -0.1413 -5.1123 11 1 3.6293 -1.7583 -3.7122 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2226 2.3468 14 1 2.3405 1.2267 2.0103 15 6 0.7258 0.2437 3.0803 16 6 1.1028 0.3453 4.5768 17 6 2.3570 -0.5540 4.6779 18 1 2.1563 -1.5991 4.9139 19 6 3.5374 0.0889 5.4233 20 1 3.2769 0.6986 6.2885 21 8 4.6336 -0.8176 5.6158 22 6 5.8127 -0.2681 5.0234 23 6 5.3794 0.8022 4.0084 24 6 3.8445 0.8522 4.1147 25 1 3.4011 1.8432 4.0171 26 6 3.1259 -0.2769 3.3630 27 1 3.7637 -1.0834 3.0012 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 0.7094 1.1618 -3.4843 32 1 1.4496 -1.4979 1.4100 33 1 0.1399 1.1103 2.7737 34 1 0.1738 -0.6763 2.8879 35 1 0.3002 -0.0390 5.2062 36 1 1.3434 1.3749 4.8414 37 1 6.4354 0.1857 5.7944 38 1 6.3706 -1.0544 4.5148 39 1 5.6803 0.5133 3.0014 40 1 5.8092 1.7690 4.2705 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001651494767.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:33:25 Heat of formation + Delta-G solvation = -24.549632 kcal Electronic energy + Delta-G solvation = -19312.163133 eV Core-core repulsion = 16513.077094 eV Total energy + Delta-G solvation = -2799.086040 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.30767 -37.53950 -35.15136 -32.52587 -31.80682 -30.24526 -28.71285 -25.82587 -25.24448 -24.86757 -22.37563 -21.50233 -20.22958 -20.14254 -18.36025 -16.65112 -15.98211 -15.79430 -15.22732 -14.94001 -14.70014 -14.20211 -13.67455 -13.18335 -12.82221 -12.69377 -12.49184 -12.14551 -11.77985 -11.71089 -11.35786 -11.21382 -10.97093 -10.79922 -10.74653 -10.59865 -10.41306 -10.26861 -10.21711 -10.06808 -9.79267 -9.70344 -9.29698 -8.84983 -8.33287 -7.16918 -5.95869 -3.98833 3.33790 3.40097 3.44938 3.68164 4.37311 4.46425 4.60471 4.63460 4.89948 5.01220 5.09613 5.24944 5.35424 5.36992 5.45542 5.55241 5.66518 5.72818 5.77641 5.80431 5.86051 5.92479 5.98008 6.07752 6.11906 6.28286 6.40426 6.51147 6.56935 6.70323 6.77205 6.92440 7.11844 7.14900 7.43349 7.78321 7.93061 8.32895 8.60173 8.68606 9.08897 9.66558 11.10990 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.029827 B = 0.005506 C = 0.004928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.515397 B = 5084.259212 C = 5680.167249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.212 3.788 3 H 0.031 0.969 4 C -0.494 4.494 5 H 0.061 0.939 6 C 0.054 3.946 7 N -0.898 5.898 8 Si 0.896 3.104 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.678 5.678 13 C 0.094 3.906 14 H 0.073 0.927 15 C -0.146 4.146 16 C -0.103 4.103 17 C -0.118 4.118 18 H 0.088 0.912 19 C 0.061 3.939 20 H 0.087 0.913 21 O -0.366 6.366 22 C 0.055 3.945 23 C -0.148 4.148 24 C -0.128 4.128 25 H 0.106 0.894 26 C -0.083 4.083 27 H 0.105 0.895 28 H 0.025 0.975 29 H 0.010 0.990 30 H 0.086 0.914 31 H 0.259 0.741 32 H 0.326 0.674 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.054 0.946 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.845 1.036 15.052 15.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.105 3.895 3 H 0.049 0.951 4 C -0.533 4.533 5 H 0.080 0.920 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.724 3.276 9 H -0.209 1.209 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.306 5.306 13 C -0.017 4.017 14 H 0.091 0.909 15 C -0.185 4.185 16 C -0.141 4.141 17 C -0.137 4.137 18 H 0.106 0.894 19 C 0.004 3.996 20 H 0.104 0.896 21 O -0.285 6.285 22 C -0.021 4.021 23 C -0.185 4.185 24 C -0.147 4.147 25 H 0.124 0.876 26 C -0.101 4.101 27 H 0.123 0.877 28 H 0.044 0.956 29 H 0.029 0.971 30 H 0.104 0.896 31 H 0.068 0.932 32 H 0.143 0.857 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.096 0.904 39 H 0.103 0.897 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.451 1.033 14.806 15.495 hybrid contribution -0.672 -0.054 -0.833 1.071 sum 3.779 0.979 13.973 14.508 Atomic orbital electron populations 1.22521 1.00769 0.99086 1.00649 1.19207 0.89593 0.94151 0.86595 0.95090 1.21193 1.30019 1.12340 0.89731 0.92047 1.24948 0.95404 0.95212 0.99005 1.69887 1.37500 1.23223 1.23231 0.86533 0.79242 0.79254 0.82568 1.20874 1.21421 1.19916 1.60818 1.57850 1.08634 1.03271 1.22177 0.91713 0.96955 0.90891 0.90902 1.23206 0.99075 1.01948 0.94317 1.22163 0.95881 0.98774 0.97248 1.23483 0.93406 0.99945 0.96830 0.89368 1.23827 0.88742 0.91308 0.95761 0.89577 1.88292 1.17751 1.44082 1.78358 1.23015 0.88157 0.96278 0.94684 1.22667 0.95701 0.99280 1.00887 1.23872 0.94666 0.99551 0.96617 0.87567 1.23267 0.96684 0.96994 0.93200 0.87672 0.95572 0.97071 0.89580 0.93160 0.85660 0.91653 0.91514 0.91759 0.91577 0.92798 0.90367 0.89747 0.91019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.06 8.73 37.16 0.32 -3.74 16 2 C 0.21 5.28 2.57 -68.87 -0.18 5.10 16 3 H 0.03 0.85 7.43 -51.93 -0.39 0.47 16 4 C -0.49 -13.71 8.84 -34.44 -0.30 -14.01 16 5 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 6 C 0.05 1.52 5.30 -17.82 -0.09 1.42 16 7 N -0.90 -25.78 11.32 55.43 0.63 -25.16 16 8 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 9 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 11 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 12 N -0.68 -14.16 6.06 -99.74 -0.60 -14.76 16 13 C 0.09 1.62 2.87 -66.56 -0.19 1.43 16 14 H 0.07 1.36 7.25 -51.93 -0.38 0.99 16 15 C -0.15 -2.20 4.91 -25.21 -0.12 -2.32 16 16 C -0.10 -1.26 6.31 -24.99 -0.16 -1.42 16 17 C -0.12 -1.57 4.72 -88.42 -0.42 -1.99 16 18 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 19 C 0.06 0.77 5.16 -25.54 -0.13 0.64 16 20 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 21 O -0.37 -5.13 10.93 -35.23 -0.39 -5.52 16 22 C 0.06 0.64 7.70 37.54 0.29 0.93 16 23 C -0.15 -1.72 6.54 -25.86 -0.17 -1.89 16 24 C -0.13 -1.65 3.88 -89.03 -0.35 -1.99 16 25 H 0.11 1.29 7.77 -51.93 -0.40 0.89 16 26 C -0.08 -1.25 3.85 -88.89 -0.34 -1.59 16 27 H 0.11 1.79 8.07 -51.93 -0.42 1.37 16 28 H 0.03 0.60 8.13 -51.93 -0.42 0.17 16 29 H 0.01 0.22 5.93 -51.93 -0.31 -0.09 16 30 H 0.09 2.29 6.07 -51.93 -0.32 1.98 16 31 H 0.26 7.10 8.31 -40.82 -0.34 6.77 16 32 H 0.33 6.60 7.84 -39.29 -0.31 6.29 16 33 H 0.06 1.01 7.38 -51.93 -0.38 0.63 16 34 H 0.07 1.04 7.55 -51.93 -0.39 0.65 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.75 7.45 -51.93 -0.39 0.36 16 37 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.08 1.06 8.13 -51.93 -0.42 0.63 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 304.54 15.07 4.59 4.59 Total: -1.00 -28.59 304.54 -9.24 -37.83 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -6.60 Total: 5.83 kcal Atomic # 6 Polarization: -17.59 SS G_CDS: -1.84 Total: -19.43 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: 0.02 Total: -39.92 kcal Atomic # 8 Polarization: -5.13 SS G_CDS: -0.39 Total: -5.52 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.59 -9.24 -37.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001651494767.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.283 kcal (2) G-P(sol) polarization free energy of solvation -28.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds