Wall clock time and date at job start Sun Mar 29 2020 23:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47099 * 2 1 4 4 C 1.50697 * 109.47355 * 240.00060 * 2 1 3 5 5 H 1.07996 * 120.00263 * 240.00547 * 4 2 1 6 6 C 1.37878 * 119.99851 * 59.99625 * 4 2 1 7 7 N 1.31518 * 120.00151 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00031 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46961 * 90.00235 * 8 6 4 10 10 H 1.48497 * 109.47210 * 210.00042 * 8 6 4 11 11 H 1.48500 * 109.46998 * 330.00489 * 8 6 4 12 12 N 1.46897 * 109.47252 * 119.99916 * 2 1 3 13 13 C 1.46897 * 110.99999 * 274.99949 * 12 2 1 14 14 H 1.08997 * 110.04786 * 326.38195 * 13 12 2 15 15 C 1.54244 * 110.02165 * 87.77467 * 13 12 2 16 16 C 1.54652 * 104.27882 * 142.53296 * 15 13 12 17 17 C 1.54666 * 102.87172 * 322.05721 * 16 15 13 18 18 H 1.09002 * 114.98040 * 269.51165 * 17 16 15 19 19 C 1.53695 * 114.28427 * 131.80546 * 17 16 15 20 20 H 1.09001 * 115.81267 * 38.04528 * 19 17 16 21 21 O 1.43539 * 112.79053 * 174.14444 * 19 17 16 22 22 C 1.42943 * 109.36716 * 122.31227 * 21 19 17 23 23 C 1.53737 * 107.98349 * 340.48618 * 22 21 19 24 24 C 1.53938 * 104.95635 * 2.12622 * 23 22 21 25 25 H 1.09001 * 115.40394 * 142.88287 * 24 23 22 26 26 C 1.53507 * 114.14562 * 280.61498 * 24 23 22 27 27 H 1.09001 * 115.64945 * 11.00885 * 26 24 23 28 28 H 1.08993 * 109.47175 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46600 * 300.00231 * 1 2 3 30 30 H 1.08998 * 109.46958 * 59.99286 * 1 2 3 31 31 H 0.96994 * 119.99932 * 179.97438 * 7 6 4 32 32 H 1.00901 * 110.99923 * 38.95223 * 12 2 1 33 33 H 1.09001 * 110.47824 * 261.32742 * 15 13 12 34 34 H 1.09002 * 110.48065 * 23.82590 * 15 13 12 35 35 H 1.09002 * 110.85794 * 203.63130 * 16 15 13 36 36 H 1.08997 * 110.53678 * 80.34075 * 16 15 13 37 37 H 1.08997 * 109.76479 * 100.12323 * 22 21 19 38 38 H 1.09004 * 109.76631 * 220.83934 * 22 21 19 39 39 H 1.09001 * 110.34457 * 243.25494 * 23 22 21 40 40 H 1.09004 * 110.34150 * 120.99693 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1203 -4.0079 9 1 1.3428 -2.1616 -4.4119 10 1 2.4865 -0.1413 -5.1123 11 1 3.6293 -1.7583 -3.7122 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2226 2.3468 14 1 2.3405 1.2267 2.0103 15 6 0.7258 0.2437 3.0803 16 6 1.1028 0.3453 4.5768 17 6 2.3570 -0.5540 4.6779 18 1 2.1563 -1.5991 4.9139 19 6 3.5374 0.0889 5.4233 20 1 3.2769 0.6986 6.2885 21 8 4.6336 -0.8176 5.6158 22 6 5.8127 -0.2681 5.0234 23 6 5.3794 0.8022 4.0084 24 6 3.8445 0.8522 4.1147 25 1 3.4011 1.8432 4.0171 26 6 3.1259 -0.2769 3.3630 27 1 3.7637 -1.0834 3.0012 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 0.7094 1.1618 -3.4843 32 1 1.4496 -1.4979 1.4100 33 1 0.1399 1.1103 2.7737 34 1 0.1738 -0.6763 2.8879 35 1 0.3002 -0.0390 5.2062 36 1 1.3434 1.3749 4.8414 37 1 6.4354 0.1857 5.7944 38 1 6.3706 -1.0544 4.5148 39 1 5.6803 0.5133 3.0014 40 1 5.8092 1.7690 4.2705 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001651494767.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:33:24 Heat of formation + Delta-G solvation = -42.252748 kcal Electronic energy + Delta-G solvation = -19312.930798 eV Core-core repulsion = 16513.077094 eV Total energy + Delta-G solvation = -2799.853704 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.38493 -38.83439 -36.78030 -34.34460 -32.95536 -31.49794 -30.28752 -27.39906 -27.06658 -26.10834 -23.47701 -22.57789 -21.99214 -21.52418 -19.47384 -18.43903 -17.22613 -17.05581 -16.63793 -16.47534 -15.87796 -15.48402 -15.11227 -14.70877 -14.35267 -13.98698 -13.95056 -13.54271 -13.27855 -12.91612 -12.89447 -12.79244 -12.63293 -12.27432 -12.19834 -12.10156 -12.01559 -11.83515 -11.64107 -11.45017 -11.24773 -10.87037 -10.75579 -10.47596 -10.28714 -8.86654 -8.09242 -6.20286 1.41620 1.42134 1.53284 2.43703 2.71895 3.18484 3.29311 3.46895 3.57637 3.76980 3.99139 4.06408 4.16135 4.29069 4.33813 4.46470 4.56138 4.60712 4.64679 4.72160 4.74231 4.80606 4.88146 4.92416 4.98089 5.03295 5.08193 5.11743 5.22076 5.25891 5.31908 5.41880 5.47953 5.53084 5.71358 5.86394 6.15841 6.30824 6.71221 6.89089 6.97827 7.50028 8.95836 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.029827 B = 0.005506 C = 0.004928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.515397 B = 5084.259212 C = 5680.167249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.220 3.780 3 H -0.002 1.002 4 C -0.516 4.516 5 H 0.051 0.949 6 C 0.009 3.991 7 N -0.922 5.922 8 Si 0.958 3.042 9 H -0.275 1.275 10 H -0.283 1.283 11 H -0.272 1.272 12 N -0.684 5.684 13 C 0.093 3.907 14 H 0.053 0.947 15 C -0.143 4.143 16 C -0.090 4.090 17 C -0.112 4.112 18 H 0.082 0.918 19 C 0.069 3.931 20 H 0.112 0.888 21 O -0.388 6.388 22 C 0.053 3.947 23 C -0.147 4.147 24 C -0.127 4.127 25 H 0.117 0.883 26 C -0.090 4.090 27 H 0.080 0.920 28 H 0.026 0.974 29 H 0.035 0.965 30 H 0.057 0.943 31 H 0.260 0.740 32 H 0.329 0.671 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.028 1.189 16.568 17.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.111 3.889 3 H 0.016 0.984 4 C -0.555 4.555 5 H 0.069 0.931 6 C -0.189 4.189 7 N -0.563 5.563 8 Si 0.784 3.216 9 H -0.201 1.201 10 H -0.209 1.209 11 H -0.197 1.197 12 N -0.313 5.313 13 C -0.018 4.018 14 H 0.072 0.928 15 C -0.182 4.182 16 C -0.127 4.127 17 C -0.131 4.131 18 H 0.100 0.900 19 C 0.012 3.988 20 H 0.129 0.871 21 O -0.307 6.307 22 C -0.024 4.024 23 C -0.184 4.184 24 C -0.146 4.146 25 H 0.135 0.865 26 C -0.109 4.109 27 H 0.098 0.902 28 H 0.046 0.954 29 H 0.054 0.946 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.147 0.853 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.638 1.183 16.341 17.028 hybrid contribution -0.700 -0.104 -1.304 1.484 sum 3.937 1.079 15.037 15.581 Atomic orbital electron populations 1.22316 0.99902 0.98976 1.00362 1.18929 0.90096 0.92272 0.87561 0.98383 1.21498 1.30296 1.12356 0.91361 0.93105 1.25700 0.95522 0.95888 1.01808 1.70010 1.38134 1.24213 1.23895 0.85553 0.78737 0.78275 0.79007 1.20101 1.20869 1.19718 1.60705 1.57694 1.09265 1.03612 1.22238 0.94100 0.95203 0.90269 0.92849 1.23087 0.97303 1.01479 0.96313 1.22110 0.95831 0.99684 0.95113 1.23485 0.94063 1.00098 0.95462 0.89954 1.23868 0.87877 0.90791 0.96270 0.87067 1.88264 1.18681 1.45173 1.78624 1.23139 0.87708 0.96293 0.95217 1.22674 0.95020 1.00528 1.00213 1.23885 0.95316 0.99179 0.96189 0.86526 1.23162 0.96658 0.97629 0.93460 0.90167 0.95437 0.94636 0.92443 0.93056 0.85292 0.92024 0.92031 0.89704 0.89871 0.90559 0.90465 0.91341 0.88804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.52 8.73 71.98 0.63 -6.89 16 2 C 0.22 11.25 2.57 44.17 0.11 11.36 16 3 H 0.00 -0.10 7.43 -2.39 -0.02 -0.12 16 4 C -0.52 -29.31 8.84 25.60 0.23 -29.08 16 5 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 6 C 0.01 0.50 5.30 84.65 0.45 0.95 16 7 N -0.92 -53.75 11.32 21.45 0.24 -53.51 16 8 Si 0.96 44.70 29.54 68.60 2.03 46.72 16 9 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 10 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 11 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 12 N -0.68 -29.28 6.06 -469.48 -2.84 -32.12 16 13 C 0.09 3.21 2.87 45.67 0.13 3.34 16 14 H 0.05 2.05 7.25 -2.39 -0.02 2.03 16 15 C -0.14 -4.12 4.91 31.58 0.16 -3.97 16 16 C -0.09 -1.96 6.31 31.72 0.20 -1.76 16 17 C -0.11 -2.77 4.72 -9.37 -0.04 -2.82 16 18 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 19 C 0.07 1.57 5.16 31.37 0.16 1.73 16 20 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 21 O -0.39 -10.13 10.93 -148.98 -1.63 -11.76 16 22 C 0.05 1.12 7.70 72.23 0.56 1.68 16 23 C -0.15 -3.21 6.54 31.16 0.20 -3.00 16 24 C -0.13 -3.05 3.88 -9.77 -0.04 -3.09 16 25 H 0.12 2.57 7.77 -2.39 -0.02 2.55 16 26 C -0.09 -2.69 3.85 -9.67 -0.04 -2.72 16 27 H 0.08 2.80 8.07 -2.39 -0.02 2.78 16 28 H 0.03 1.26 8.13 -2.39 -0.02 1.24 16 29 H 0.03 1.48 5.93 -2.38 -0.01 1.47 16 30 H 0.06 3.11 6.07 -2.39 -0.01 3.09 16 31 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 32 H 0.33 13.55 7.84 -89.69 -0.70 12.84 16 33 H 0.06 1.82 7.38 -2.39 -0.02 1.81 16 34 H 0.06 1.85 7.55 -2.39 -0.02 1.83 16 35 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.08 1.57 7.45 -2.39 -0.02 1.56 16 37 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 39 H 0.07 1.71 8.13 -2.39 -0.02 1.69 16 40 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 Total: -1.00 -62.00 304.54 0.82 -61.18 By element: Atomic # 1 Polarization: 23.44 SS G_CDS: 0.31 Total: 23.76 kcal Atomic # 6 Polarization: -36.97 SS G_CDS: 2.71 Total: -34.26 kcal Atomic # 7 Polarization: -83.03 SS G_CDS: -2.60 Total: -85.63 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: -1.63 Total: -11.76 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Total: -62.00 0.82 -61.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001651494767.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.926 kcal (2) G-P(sol) polarization free energy of solvation -61.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds