Wall clock time and date at job start Sun Mar 29 2020 23:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47750 * 2 1 4 4 C 1.50700 * 109.47063 * 239.99695 * 2 1 3 5 5 H 1.07999 * 120.00132 * 268.41777 * 4 2 1 6 6 C 1.37881 * 119.99931 * 88.40886 * 4 2 1 7 7 N 1.31519 * 119.99789 * 353.33906 * 6 4 2 8 8 Si 1.86793 * 120.00075 * 173.33937 * 6 4 2 9 9 H 1.48503 * 109.47437 * 90.00124 * 8 6 4 10 10 H 1.48500 * 109.47260 * 330.00068 * 8 6 4 11 11 H 1.48507 * 109.47097 * 210.00011 * 8 6 4 12 12 N 1.46903 * 109.46894 * 120.00077 * 2 1 3 13 13 C 1.46891 * 111.00055 * 274.99772 * 12 2 1 14 14 H 1.08998 * 109.85157 * 34.04941 * 13 12 2 15 15 C 1.53498 * 109.85689 * 272.97370 * 13 12 2 16 16 C 1.53564 * 107.21018 * 241.43504 * 15 13 12 17 17 C 1.54083 * 106.16895 * 342.26888 * 16 15 13 18 18 H 1.08994 * 115.67430 * 257.54321 * 17 16 15 19 19 C 1.53730 * 112.71852 * 120.76774 * 17 16 15 20 20 H 1.09001 * 116.58120 * 37.87351 * 19 17 16 21 21 O 1.44236 * 113.43212 * 174.73299 * 19 17 16 22 22 C 1.44425 * 105.32635 * 134.14228 * 21 19 17 23 23 C 1.54453 * 104.81146 * 319.33106 * 22 21 19 24 24 C 1.54541 * 104.12693 * 23.91672 * 23 22 21 25 25 H 1.09001 * 115.34882 * 130.35278 * 24 23 22 26 26 C 1.53321 * 109.85824 * 155.00434 * 13 12 2 27 27 H 1.08999 * 114.16492 * 265.35477 * 26 13 12 28 28 H 1.09007 * 109.47168 * 299.28096 * 1 2 3 29 29 H 1.09003 * 109.47051 * 59.27686 * 1 2 3 30 30 H 1.09000 * 109.47805 * 179.27821 * 1 2 3 31 31 H 0.97006 * 119.99840 * 354.50423 * 7 6 4 32 32 H 1.00905 * 110.99956 * 38.95743 * 12 2 1 33 33 H 1.09005 * 109.89361 * 0.83400 * 15 13 12 34 34 H 1.09001 * 109.89290 * 122.03266 * 15 13 12 35 35 H 1.09000 * 110.11441 * 223.09402 * 16 15 13 36 36 H 1.08994 * 110.17157 * 101.47692 * 16 15 13 37 37 H 1.09007 * 110.37122 * 200.49527 * 22 21 19 38 38 H 1.09000 * 110.45860 * 78.21522 * 22 21 19 39 39 H 1.08998 * 110.49689 * 265.25443 * 23 22 21 40 40 H 1.09002 * 110.49876 * 142.58146 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.2366 -1.7704 -1.1964 6 6 2.2308 -0.0073 -2.3997 7 7 1.8596 1.2518 -2.4810 8 14 3.0270 -0.8430 -3.8684 9 1 1.9764 -1.4658 -4.7132 10 1 3.9655 -1.8910 -3.3929 11 1 3.7720 0.1635 -4.6668 12 7 2.0196 -0.6925 1.1995 13 6 2.0824 0.2225 2.3469 14 1 1.2698 0.9465 2.2878 15 6 3.4334 0.9511 2.3593 16 6 4.1432 0.5699 3.6666 17 6 3.0530 0.0063 4.5982 18 1 2.7032 0.6819 5.3787 19 6 3.3355 -1.4402 5.0356 20 1 4.3761 -1.6943 5.2372 21 8 2.3899 -1.9422 6.0022 22 6 2.0305 -3.2608 5.5354 23 6 1.8942 -3.1140 4.0039 24 6 2.7697 -1.8870 3.6632 25 1 3.4783 -2.0313 2.8476 26 6 1.9775 -0.5727 3.6535 27 1 0.9662 -0.6410 4.0544 28 1 -0.3634 0.5027 0.8964 29 1 -0.3633 0.5250 -0.8835 30 1 -0.3635 -1.0275 -0.0129 31 1 1.3749 1.6628 -1.7481 32 1 1.4495 -1.4980 1.4100 33 1 4.0332 0.6350 1.5058 34 1 3.2738 2.0288 2.3245 35 1 4.6008 1.4515 4.1155 36 1 4.9016 -0.1891 3.4750 37 1 1.0820 -3.5727 5.9727 38 1 2.8141 -3.9781 5.7796 39 1 0.8556 -2.9301 3.7291 40 1 2.2714 -4.0040 3.5001 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001651494768.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:33:27 Heat of formation + Delta-G solvation = -28.081295 kcal Electronic energy + Delta-G solvation = -19533.101947 eV Core-core repulsion = 16733.862763 eV Total energy + Delta-G solvation = -2799.239184 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.33709 -37.47216 -35.31854 -32.41327 -31.88917 -30.27653 -28.81062 -26.01330 -24.95389 -24.57973 -22.71777 -21.53434 -20.82800 -19.25478 -18.38445 -16.95349 -16.13986 -15.98612 -15.24526 -15.11599 -14.56347 -13.89703 -13.64413 -13.29271 -13.21304 -12.75116 -12.52867 -11.95313 -11.77408 -11.64104 -11.33155 -11.15605 -11.04701 -10.89167 -10.75466 -10.69786 -10.53232 -10.33388 -10.08601 -10.00664 -9.84287 -9.78596 -9.40999 -8.51453 -8.35842 -7.24897 -6.30567 -3.99349 3.45873 3.50313 3.66193 3.70896 4.37614 4.54634 4.60167 4.64299 4.92476 5.02182 5.14734 5.19494 5.25797 5.39359 5.48198 5.55135 5.67762 5.74151 5.74807 5.84766 5.86722 5.91088 6.03337 6.13024 6.22408 6.26751 6.38517 6.46703 6.49594 6.56591 6.61249 6.76368 6.78549 6.94315 7.09001 7.28772 7.97846 8.36099 8.52172 8.63720 8.94249 9.70194 11.07057 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.030581 B = 0.005758 C = 0.005517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.395510 B = 4861.799239 C = 5074.337322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.194 3.806 3 H 0.039 0.961 4 C -0.570 4.570 5 H 0.051 0.949 6 C 0.017 3.983 7 N -0.917 5.917 8 Si 1.069 2.931 9 H -0.291 1.291 10 H -0.289 1.289 11 H -0.285 1.285 12 N -0.666 5.666 13 C 0.091 3.909 14 H 0.034 0.966 15 C -0.111 4.111 16 C -0.098 4.098 17 C -0.101 4.101 18 H 0.087 0.913 19 C 0.050 3.950 20 H 0.086 0.914 21 O -0.365 6.365 22 C 0.048 3.952 23 C -0.150 4.150 24 C -0.115 4.115 25 H 0.124 0.876 26 C -0.101 4.101 27 H 0.089 0.911 28 H 0.014 0.986 29 H 0.050 0.950 30 H 0.038 0.962 31 H 0.268 0.732 32 H 0.322 0.678 33 H 0.084 0.916 34 H 0.053 0.947 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.087 0.913 38 H 0.056 0.944 39 H 0.074 0.926 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.860 -5.478 14.290 15.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.086 3.914 3 H 0.056 0.944 4 C -0.609 4.609 5 H 0.069 0.931 6 C -0.186 4.186 7 N -0.554 5.554 8 Si 0.898 3.102 9 H -0.218 1.218 10 H -0.215 1.215 11 H -0.211 1.211 12 N -0.295 5.295 13 C -0.020 4.020 14 H 0.052 0.948 15 C -0.149 4.149 16 C -0.136 4.136 17 C -0.120 4.120 18 H 0.106 0.894 19 C -0.007 4.007 20 H 0.103 0.897 21 O -0.284 6.284 22 C -0.029 4.029 23 C -0.187 4.187 24 C -0.134 4.134 25 H 0.142 0.858 26 C -0.120 4.120 27 H 0.107 0.893 28 H 0.033 0.967 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.139 0.861 33 H 0.102 0.898 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.105 0.895 38 H 0.074 0.926 39 H 0.093 0.907 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.000 -5.015 12.757 14.032 hybrid contribution -1.695 -0.306 1.599 2.350 sum 1.305 -5.321 14.356 15.366 Atomic orbital electron populations 1.22598 1.01960 0.99527 0.98659 1.19417 0.88426 0.95183 0.88398 0.94353 1.21835 1.47212 0.96764 0.95072 0.93073 1.25769 0.96361 0.95718 1.00773 1.70775 1.36936 1.12456 1.35203 0.83558 0.76350 0.75083 0.75237 1.21773 1.21482 1.21085 1.61077 1.57375 1.08449 1.02609 1.21774 0.96121 0.94048 0.90008 0.94807 1.22004 0.96624 0.98827 0.97470 1.21811 0.96783 1.00161 0.94834 1.23071 0.97247 0.94312 0.97405 0.89442 1.24197 0.92666 0.95917 0.87942 0.89681 1.88986 1.61600 1.30369 1.47473 1.23458 1.00152 0.85470 0.93834 1.22939 1.01166 0.98981 0.95641 1.23861 0.98437 0.93125 0.97949 0.85830 1.23211 0.97798 0.95360 0.95606 0.89307 0.96735 0.93094 0.94328 0.92141 0.86079 0.89765 0.92797 0.91936 0.91453 0.89503 0.92577 0.90740 0.90599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.82 9.04 37.16 0.34 -3.48 16 2 C 0.19 4.74 2.04 -68.86 -0.14 4.60 16 3 H 0.04 1.04 6.58 -51.93 -0.34 0.69 16 4 C -0.57 -15.72 8.64 -34.44 -0.30 -16.02 16 5 H 0.05 1.43 7.82 -52.49 -0.41 1.02 16 6 C 0.02 0.49 5.45 -17.82 -0.10 0.39 16 7 N -0.92 -27.42 13.55 55.43 0.75 -26.67 16 8 Si 1.07 25.26 29.91 -169.99 -5.08 20.18 16 9 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 N -0.67 -13.62 5.20 -100.52 -0.52 -14.14 16 13 C 0.09 1.61 2.84 -67.29 -0.19 1.42 16 14 H 0.03 0.65 7.14 -51.93 -0.37 0.28 16 15 C -0.11 -1.87 6.38 -26.18 -0.17 -2.03 16 16 C -0.10 -1.33 6.10 -25.87 -0.16 -1.49 16 17 C -0.10 -1.37 4.91 -88.94 -0.44 -1.81 16 18 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 19 C 0.05 0.66 4.80 -25.28 -0.12 0.54 16 20 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 21 O -0.37 -5.05 11.20 -35.23 -0.39 -5.45 16 22 C 0.05 0.53 7.63 37.92 0.29 0.82 16 23 C -0.15 -1.78 6.66 -25.16 -0.17 -1.95 16 24 C -0.12 -1.57 3.27 -88.50 -0.29 -1.86 16 25 H 0.12 1.87 7.83 -51.93 -0.41 1.46 16 26 C -0.10 -1.50 3.58 -89.48 -0.32 -1.82 16 27 H 0.09 1.34 7.97 -51.93 -0.41 0.93 16 28 H 0.01 0.29 7.44 -51.93 -0.39 -0.10 16 29 H 0.05 1.24 7.67 -51.93 -0.40 0.84 16 30 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.27 7.96 6.37 -40.82 -0.26 7.70 16 32 H 0.32 6.34 7.73 -39.29 -0.30 6.03 16 33 H 0.08 1.64 7.90 -51.93 -0.41 1.23 16 34 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.88 7.71 -51.93 -0.40 0.48 16 37 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.91 7.91 -51.93 -0.41 0.50 16 40 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 307.69 15.07 4.64 4.64 Total: -1.00 -29.27 307.69 -9.06 -38.33 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -6.69 Total: 5.82 kcal Atomic # 6 Polarization: -20.95 SS G_CDS: -1.76 Total: -22.71 kcal Atomic # 7 Polarization: -41.03 SS G_CDS: 0.23 Total: -40.81 kcal Atomic # 8 Polarization: -5.05 SS G_CDS: -0.39 Total: -5.45 kcal Atomic # 14 Polarization: 25.26 SS G_CDS: -5.08 Total: 20.18 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.27 -9.06 -38.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001651494768.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.251 kcal (2) G-P(sol) polarization free energy of solvation -29.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds