Wall clock time and date at job start Sun Mar 29 2020 23:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47170 * 2 1 4 4 H 1.09007 * 109.46627 * 174.71724 * 3 2 1 5 5 C 1.50693 * 109.46932 * 54.71463 * 3 2 1 6 6 H 1.08005 * 119.99943 * 239.99781 * 5 3 2 7 7 C 1.37883 * 120.00080 * 60.27753 * 5 3 2 8 8 N 1.31511 * 119.99827 * 359.71752 * 7 5 3 9 9 Si 1.86795 * 119.99856 * 179.72334 * 7 5 3 10 10 H 1.48497 * 109.47508 * 59.99491 * 9 7 5 11 11 H 1.48500 * 109.47289 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.47106 * 299.99919 * 9 7 5 13 13 N 1.46900 * 109.46984 * 294.71419 * 3 2 1 14 14 C 1.46904 * 110.99758 * 273.55137 * 13 3 2 15 15 C 1.53000 * 109.47075 * 179.08873 * 14 13 3 16 16 H 1.09000 * 109.35607 * 305.00053 * 15 14 13 17 17 C 1.50073 * 109.36154 * 64.72025 * 15 14 13 18 18 C 1.50701 * 117.95643 * 317.34203 * 17 15 14 19 19 C 1.29434 * 124.07673 * 137.36099 * 17 15 14 20 20 C 1.50068 * 124.07881 * 359.51317 * 19 17 15 21 21 C 1.53023 * 110.14337 * 17.12769 * 20 19 17 22 22 C 1.53027 * 109.36042 * 185.27642 * 15 14 13 23 23 H 1.08997 * 109.63666 * 70.67138 * 22 15 14 24 24 C 1.53000 * 109.63738 * 310.03894 * 22 15 14 25 25 H 1.08995 * 109.47407 * 185.69339 * 1 2 3 26 26 H 1.09004 * 109.46902 * 305.69121 * 1 2 3 27 27 H 1.09002 * 109.47052 * 65.68416 * 1 2 3 28 28 H 1.09004 * 109.46608 * 240.00230 * 2 1 3 29 29 H 1.09003 * 109.47166 * 120.00266 * 2 1 3 30 30 H 0.97004 * 119.99850 * 180.02562 * 8 7 5 31 31 H 1.00893 * 111.00225 * 37.50295 * 13 3 2 32 32 H 1.09004 * 109.47160 * 299.08482 * 14 13 3 33 33 H 1.08993 * 109.47105 * 59.08799 * 14 13 3 34 34 H 1.09001 * 109.47165 * 90.00203 * 18 17 15 35 35 H 1.09008 * 109.46826 * 209.99447 * 18 17 15 36 36 H 1.08997 * 109.47946 * 329.99369 * 18 17 15 37 37 H 1.08000 * 117.96405 * 179.53021 * 19 17 15 38 38 H 1.08996 * 109.36369 * 137.33644 * 20 19 17 39 39 H 1.08996 * 109.35744 * 256.92524 * 20 19 17 40 40 H 1.09005 * 109.64290 * 70.25148 * 21 20 19 41 41 H 1.09006 * 109.64500 * 190.88011 * 21 20 19 42 42 H 1.08999 * 109.46991 * 60.00205 * 24 22 15 43 43 H 1.09002 * 109.46435 * 180.02562 * 24 22 15 44 44 H 1.08998 * 109.47205 * 299.99672 * 24 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1260 1.4439 0.0946 5 6 1.4337 2.1896 1.1598 6 1 0.8249 3.0635 0.9802 7 6 1.6609 1.7610 2.4504 8 7 2.4021 0.6969 2.6690 9 14 0.9156 2.6917 3.8884 10 1 -0.5643 2.6907 3.7652 11 1 1.3064 2.0327 5.1605 12 1 1.4117 4.0914 3.8826 13 7 1.6573 2.0972 -1.2581 14 6 2.6547 1.8457 -2.3070 15 6 2.2112 2.5228 -3.6054 16 1 1.2091 2.1823 -3.8663 17 6 2.1959 4.0107 -3.4105 18 6 1.6267 4.5488 -2.1231 19 6 2.6409 4.8605 -4.2795 20 6 3.2439 4.4764 -5.5989 21 6 2.8763 3.0320 -5.9457 22 6 3.1817 2.1510 -4.7286 23 1 3.0490 1.1026 -4.9953 24 6 4.6201 2.3904 -4.2654 25 1 -0.3634 -1.0225 0.1019 26 1 -0.3633 0.5996 0.8347 27 1 -0.3633 0.4232 -0.9365 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8900 30 1 2.5616 0.3952 3.5771 31 1 0.7390 1.8025 -1.5543 32 1 3.6181 2.2505 -1.9969 33 1 2.7473 0.7720 -2.4704 34 1 2.4209 4.6316 -1.3812 35 1 1.1919 5.5325 -2.3012 36 1 0.8554 3.8719 -1.7557 37 1 2.5744 5.9115 -4.0400 38 1 2.8671 5.1416 -6.3758 39 1 4.3283 4.5692 -5.5413 40 1 1.8148 2.9717 -6.1864 41 1 3.4679 2.6978 -6.7981 42 1 4.8271 1.7749 -3.3899 43 1 5.3089 2.1252 -5.0675 44 1 4.7491 3.4419 -4.0090 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191115493.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:38:59 Heat of formation + Delta-G solvation = -4.805928 kcal Electronic energy + Delta-G solvation = -19758.913036 eV Core-core repulsion = 17096.516242 eV Total energy + Delta-G solvation = -2662.396794 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.56891 -36.35836 -33.26064 -32.88333 -31.38549 -29.69207 -27.36006 -26.36296 -25.96864 -23.91200 -23.01546 -21.12253 -20.39005 -19.28385 -16.84674 -15.95100 -15.40611 -14.95741 -14.64969 -14.50067 -14.11772 -13.58322 -13.20816 -12.79117 -12.66745 -12.50452 -12.34935 -12.13356 -11.81061 -11.67727 -11.44859 -11.35487 -11.17214 -10.89494 -10.81680 -10.69663 -10.48491 -10.33825 -10.15064 -9.92731 -9.75555 -9.58656 -9.44024 -8.92671 -8.31452 -8.26723 -7.01623 -5.94218 -3.95394 2.68748 3.35750 3.40325 3.43446 4.46495 4.82712 4.88499 4.96582 5.34539 5.37519 5.42655 5.56055 5.57994 5.60441 5.70678 5.80734 5.91843 5.96665 6.00377 6.17333 6.20429 6.25321 6.31709 6.32967 6.37686 6.40030 6.46769 6.57409 6.59505 6.68607 6.73602 6.91933 6.99912 7.21861 7.31839 7.33917 7.54906 7.58084 7.74576 7.92682 8.33271 8.59141 8.66818 9.10183 9.68078 11.12801 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.030419 B = 0.005693 C = 0.005279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.268574 B = 4917.030224 C = 5302.997353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.145 4.145 3 C 0.214 3.786 4 H 0.030 0.970 5 C -0.485 4.485 6 H 0.061 0.939 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.892 3.108 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.278 1.278 13 N -0.676 5.676 14 C 0.068 3.932 15 C -0.048 4.048 16 H 0.072 0.928 17 C -0.075 4.075 18 C -0.114 4.114 19 C -0.200 4.200 20 C -0.081 4.081 21 C -0.113 4.113 22 C -0.086 4.086 23 H 0.067 0.933 24 C -0.150 4.150 25 H 0.022 0.978 26 H 0.069 0.931 27 H 0.027 0.973 28 H 0.009 0.991 29 H 0.091 0.909 30 H 0.259 0.741 31 H 0.323 0.677 32 H 0.068 0.932 33 H 0.017 0.983 34 H 0.069 0.931 35 H 0.030 0.970 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.059 0.941 39 H 0.066 0.934 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.046 0.954 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.771 3.147 -14.032 14.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.184 4.184 3 C 0.107 3.893 4 H 0.048 0.952 5 C -0.524 4.524 6 H 0.079 0.921 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.720 3.280 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.204 1.204 13 N -0.307 5.307 14 C -0.062 4.062 15 C -0.066 4.066 16 H 0.090 0.910 17 C -0.075 4.075 18 C -0.171 4.171 19 C -0.218 4.218 20 C -0.118 4.118 21 C -0.151 4.151 22 C -0.105 4.105 23 H 0.085 0.915 24 C -0.207 4.207 25 H 0.041 0.959 26 H 0.088 0.912 27 H 0.046 0.954 28 H 0.028 0.972 29 H 0.109 0.891 30 H 0.068 0.932 31 H 0.141 0.859 32 H 0.086 0.914 33 H 0.036 0.964 34 H 0.087 0.913 35 H 0.049 0.951 36 H 0.116 0.884 37 H 0.113 0.887 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.065 0.935 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.117 3.657 -13.677 14.202 hybrid contribution -0.492 -0.524 0.660 0.976 sum 0.625 3.132 -13.018 13.404 Atomic orbital electron populations 1.21597 0.97739 0.98642 1.00699 1.22095 0.94939 1.01292 1.00084 1.19206 0.95837 0.88475 0.85829 0.95197 1.21027 1.30304 1.11447 0.89647 0.92087 1.24911 0.95592 0.95176 0.98709 1.69876 1.39092 1.24090 1.20608 0.86663 0.79517 0.80032 0.81755 1.20446 1.21615 1.20410 1.61185 1.03628 1.61994 1.03859 1.21963 0.97364 0.96166 0.90701 1.20128 0.98589 0.92963 0.94948 0.90953 1.20934 0.96495 0.94188 0.95921 1.21141 1.02795 0.98784 0.94378 1.21723 1.04973 0.98666 0.96403 1.20342 1.00084 0.95959 0.95453 1.21611 1.01030 0.95253 0.97187 1.21143 0.95591 0.98918 0.94826 0.91490 1.21937 0.95312 1.02617 1.00829 0.95926 0.91193 0.95447 0.97222 0.89090 0.93159 0.85890 0.91366 0.96449 0.91268 0.95064 0.88396 0.88660 0.92273 0.91553 0.92080 0.92300 0.92224 0.93489 0.91890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.72 9.40 37.16 0.35 -2.37 16 2 C -0.14 -3.33 5.52 -26.73 -0.15 -3.48 16 3 C 0.21 5.12 2.33 -68.87 -0.16 4.96 16 4 H 0.03 0.81 7.79 -51.92 -0.40 0.40 16 5 C -0.49 -12.75 7.23 -34.44 -0.25 -13.00 16 6 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 7 C 0.06 1.52 5.29 -17.82 -0.09 1.43 16 8 N -0.90 -25.15 11.39 55.43 0.63 -24.52 16 9 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 N -0.68 -13.40 2.90 -107.95 -0.31 -13.71 16 14 C 0.07 1.18 3.83 -3.82 -0.01 1.17 16 15 C -0.05 -0.70 2.30 -92.06 -0.21 -0.91 16 16 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 17 C -0.08 -1.14 5.08 -100.93 -0.51 -1.65 16 18 C -0.11 -1.91 8.34 36.01 0.30 -1.61 16 19 C -0.20 -2.73 8.71 -35.90 -0.31 -3.05 16 20 C -0.08 -0.94 5.48 -28.18 -0.15 -1.09 16 21 C -0.11 -1.27 5.66 -26.55 -0.15 -1.42 16 22 C -0.09 -1.09 2.90 -90.44 -0.26 -1.35 16 23 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 24 C -0.15 -1.90 7.91 37.16 0.29 -1.60 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.07 1.62 6.84 -51.93 -0.35 1.26 16 27 H 0.03 0.51 6.66 -51.93 -0.35 0.16 16 28 H 0.01 0.20 7.44 -51.93 -0.39 -0.19 16 29 H 0.09 2.38 6.24 -51.93 -0.32 2.05 16 30 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 31 H 0.32 6.20 6.44 -39.30 -0.25 5.95 16 32 H 0.07 1.27 6.59 -51.93 -0.34 0.93 16 33 H 0.02 0.31 7.44 -51.93 -0.39 -0.08 16 34 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.03 0.47 7.89 -51.92 -0.41 0.06 16 36 H 0.10 1.77 5.81 -51.93 -0.30 1.46 16 37 H 0.10 1.28 7.80 -52.49 -0.41 0.87 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.74 6.91 -51.93 -0.36 0.38 16 40 H 0.06 0.69 8.12 -51.93 -0.42 0.27 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.81 6.44 -51.93 -0.33 0.48 16 43 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.84 5.67 -51.93 -0.29 0.54 16 LS Contribution 322.31 15.07 4.86 4.86 Total: -1.00 -26.24 322.31 -9.00 -35.24 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -7.83 Total: 5.93 kcal Atomic # 6 Polarization: -22.67 SS G_CDS: -1.33 Total: -23.99 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: 0.32 Total: -38.23 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -26.24 -9.00 -35.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191115493.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.438 kcal (2) G-P(sol) polarization free energy of solvation -26.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds