Wall clock time and date at job start Sun Mar 29 2020 23:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47170 * 2 1 4 4 H 1.09007 * 109.46627 * 174.71724 * 3 2 1 5 5 C 1.50693 * 109.46932 * 54.71463 * 3 2 1 6 6 H 1.08005 * 119.99943 * 239.99781 * 5 3 2 7 7 C 1.37883 * 120.00080 * 60.27753 * 5 3 2 8 8 N 1.31511 * 119.99827 * 359.71752 * 7 5 3 9 9 Si 1.86795 * 119.99856 * 179.72334 * 7 5 3 10 10 H 1.48497 * 109.47508 * 59.99491 * 9 7 5 11 11 H 1.48500 * 109.47289 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.47106 * 299.99919 * 9 7 5 13 13 N 1.46900 * 109.46984 * 294.71419 * 3 2 1 14 14 C 1.46904 * 110.99758 * 273.55137 * 13 3 2 15 15 C 1.53000 * 109.47075 * 179.08873 * 14 13 3 16 16 H 1.09000 * 109.35607 * 305.00053 * 15 14 13 17 17 C 1.50073 * 109.36154 * 64.72025 * 15 14 13 18 18 C 1.50701 * 117.95643 * 317.34203 * 17 15 14 19 19 C 1.29434 * 124.07673 * 137.36099 * 17 15 14 20 20 C 1.50068 * 124.07881 * 359.51317 * 19 17 15 21 21 C 1.53023 * 110.14337 * 17.12769 * 20 19 17 22 22 C 1.53027 * 109.36042 * 185.27642 * 15 14 13 23 23 H 1.08997 * 109.63666 * 70.67138 * 22 15 14 24 24 C 1.53000 * 109.63738 * 310.03894 * 22 15 14 25 25 H 1.08995 * 109.47407 * 185.69339 * 1 2 3 26 26 H 1.09004 * 109.46902 * 305.69121 * 1 2 3 27 27 H 1.09002 * 109.47052 * 65.68416 * 1 2 3 28 28 H 1.09004 * 109.46608 * 240.00230 * 2 1 3 29 29 H 1.09003 * 109.47166 * 120.00266 * 2 1 3 30 30 H 0.97004 * 119.99850 * 180.02562 * 8 7 5 31 31 H 1.00893 * 111.00225 * 37.50295 * 13 3 2 32 32 H 1.09004 * 109.47160 * 299.08482 * 14 13 3 33 33 H 1.08993 * 109.47105 * 59.08799 * 14 13 3 34 34 H 1.09001 * 109.47165 * 90.00203 * 18 17 15 35 35 H 1.09008 * 109.46826 * 209.99447 * 18 17 15 36 36 H 1.08997 * 109.47946 * 329.99369 * 18 17 15 37 37 H 1.08000 * 117.96405 * 179.53021 * 19 17 15 38 38 H 1.08996 * 109.36369 * 137.33644 * 20 19 17 39 39 H 1.08996 * 109.35744 * 256.92524 * 20 19 17 40 40 H 1.09005 * 109.64290 * 70.25148 * 21 20 19 41 41 H 1.09006 * 109.64500 * 190.88011 * 21 20 19 42 42 H 1.08999 * 109.46991 * 60.00205 * 24 22 15 43 43 H 1.09002 * 109.46435 * 180.02562 * 24 22 15 44 44 H 1.08998 * 109.47205 * 299.99672 * 24 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1260 1.4439 0.0946 5 6 1.4337 2.1896 1.1598 6 1 0.8249 3.0635 0.9802 7 6 1.6609 1.7610 2.4504 8 7 2.4021 0.6969 2.6690 9 14 0.9156 2.6917 3.8884 10 1 -0.5643 2.6907 3.7652 11 1 1.3064 2.0327 5.1605 12 1 1.4117 4.0914 3.8826 13 7 1.6573 2.0972 -1.2581 14 6 2.6547 1.8457 -2.3070 15 6 2.2112 2.5228 -3.6054 16 1 1.2091 2.1823 -3.8663 17 6 2.1959 4.0107 -3.4105 18 6 1.6267 4.5488 -2.1231 19 6 2.6409 4.8605 -4.2795 20 6 3.2439 4.4764 -5.5989 21 6 2.8763 3.0320 -5.9457 22 6 3.1817 2.1510 -4.7286 23 1 3.0490 1.1026 -4.9953 24 6 4.6201 2.3904 -4.2654 25 1 -0.3634 -1.0225 0.1019 26 1 -0.3633 0.5996 0.8347 27 1 -0.3633 0.4232 -0.9365 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8900 30 1 2.5616 0.3952 3.5771 31 1 0.7390 1.8025 -1.5543 32 1 3.6181 2.2505 -1.9969 33 1 2.7473 0.7720 -2.4704 34 1 2.4209 4.6316 -1.3812 35 1 1.1919 5.5325 -2.3012 36 1 0.8554 3.8719 -1.7557 37 1 2.5744 5.9115 -4.0400 38 1 2.8671 5.1416 -6.3758 39 1 4.3283 4.5692 -5.5413 40 1 1.8148 2.9717 -6.1864 41 1 3.4679 2.6978 -6.7981 42 1 4.8271 1.7749 -3.3899 43 1 5.3089 2.1252 -5.0675 44 1 4.7491 3.4419 -4.0090 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191115493.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:38:59 Heat of formation + Delta-G solvation = -16.631638 kcal Electronic energy + Delta-G solvation = -19759.425837 eV Core-core repulsion = 17096.516242 eV Total energy + Delta-G solvation = -2662.909595 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.71092 -38.07301 -34.82465 -34.09975 -33.12023 -31.15497 -28.79731 -27.69730 -27.41219 -25.51534 -24.67131 -22.35003 -21.45681 -21.16001 -18.26515 -17.66843 -16.77104 -16.45638 -16.24501 -15.67847 -15.51148 -15.07470 -14.69070 -14.36875 -14.16989 -13.80745 -13.71219 -13.58646 -13.32464 -12.93569 -12.74193 -12.69950 -12.63098 -12.50056 -12.41448 -12.32759 -11.97068 -11.80622 -11.65531 -11.43039 -11.34793 -11.07556 -10.85199 -10.71120 -10.39443 -9.42451 -8.68232 -8.01927 -6.09400 1.44819 1.45416 1.52550 1.54098 2.47613 3.27076 3.62187 3.86109 3.87281 4.12774 4.28887 4.45604 4.49631 4.54147 4.58108 4.61739 4.64755 4.70857 4.77592 4.80491 4.84413 4.97963 5.02356 5.12273 5.13351 5.16236 5.20939 5.24029 5.28061 5.38874 5.42268 5.45566 5.50979 5.59379 5.73059 5.73560 5.77865 5.88535 6.01456 6.34455 6.40188 6.74933 6.92115 7.04696 7.58147 9.03300 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.030419 B = 0.005693 C = 0.005279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.268574 B = 4917.030224 C = 5302.997353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.138 4.138 3 C 0.222 3.778 4 H -0.010 1.010 5 C -0.492 4.492 6 H 0.054 0.946 7 C 0.012 3.988 8 N -0.923 5.923 9 Si 0.948 3.052 10 H -0.271 1.271 11 H -0.290 1.290 12 H -0.278 1.278 13 N -0.671 5.671 14 C 0.075 3.925 15 C -0.039 4.039 16 H 0.075 0.925 17 C -0.101 4.101 18 C -0.106 4.106 19 C -0.182 4.182 20 C -0.083 4.083 21 C -0.108 4.108 22 C -0.084 4.084 23 H 0.075 0.925 24 C -0.147 4.147 25 H 0.039 0.961 26 H 0.045 0.955 27 H 0.050 0.950 28 H 0.022 0.978 29 H 0.058 0.942 30 H 0.257 0.743 31 H 0.329 0.671 32 H 0.049 0.951 33 H 0.014 0.986 34 H 0.038 0.962 35 H 0.042 0.958 36 H 0.082 0.918 37 H 0.098 0.902 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.063 0.937 41 H 0.080 0.920 42 H 0.040 0.960 43 H 0.067 0.933 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.153 3.716 -16.223 16.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.178 4.178 3 C 0.113 3.887 4 H 0.008 0.992 5 C -0.530 4.530 6 H 0.073 0.927 7 C -0.186 4.186 8 N -0.564 5.564 9 Si 0.775 3.225 10 H -0.196 1.196 11 H -0.215 1.215 12 H -0.203 1.203 13 N -0.302 5.302 14 C -0.055 4.055 15 C -0.057 4.057 16 H 0.093 0.907 17 C -0.101 4.101 18 C -0.163 4.163 19 C -0.200 4.200 20 C -0.120 4.120 21 C -0.146 4.146 22 C -0.103 4.103 23 H 0.093 0.907 24 C -0.204 4.204 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.041 0.959 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.148 0.852 32 H 0.068 0.932 33 H 0.032 0.968 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.100 0.900 37 H 0.116 0.884 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.082 0.918 41 H 0.099 0.901 42 H 0.059 0.941 43 H 0.086 0.914 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.490 4.234 -15.884 16.446 hybrid contribution -0.250 -0.653 1.291 1.469 sum 0.241 3.581 -14.593 15.028 Atomic orbital electron populations 1.21472 0.95848 0.99492 1.00910 1.21945 0.96533 1.00219 0.99062 1.18932 0.93191 0.89290 0.87285 0.99192 1.21255 1.29894 1.11221 0.90671 0.92749 1.25581 0.96068 0.95917 1.01016 1.70016 1.40238 1.25320 1.20804 0.85762 0.79084 0.78724 0.78918 1.19623 1.21542 1.20316 1.61084 1.04431 1.61397 1.03262 1.21920 0.95965 0.96178 0.91420 1.20038 0.99315 0.92439 0.93917 0.90677 1.20828 0.98826 0.94629 0.95829 1.20975 1.01359 0.99202 0.94745 1.21985 1.02538 0.98554 0.96906 1.20424 1.00438 0.96686 0.94432 1.21600 1.01654 0.94449 0.96882 1.21158 0.94670 0.99857 0.94651 0.90698 1.21901 0.96019 1.01678 1.00824 0.94197 0.93545 0.93108 0.95927 0.92340 0.93411 0.85184 0.93209 0.96756 0.94275 0.93938 0.89977 0.88400 0.90327 0.90734 0.91804 0.90114 0.94067 0.91414 0.92744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.95 9.40 71.98 0.68 -4.28 16 2 C -0.14 -6.44 5.52 30.60 0.17 -6.27 16 3 C 0.22 10.94 2.33 44.17 0.10 11.04 16 4 H -0.01 -0.56 7.79 -2.38 -0.02 -0.58 16 5 C -0.49 -26.45 7.23 25.60 0.19 -26.26 16 6 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 7 C 0.01 0.66 5.29 84.66 0.45 1.10 16 8 N -0.92 -53.16 11.39 21.45 0.24 -52.91 16 9 Si 0.95 44.04 29.54 68.60 2.03 46.06 16 10 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 11 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 12 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 13 N -0.67 -27.06 2.90 -495.44 -1.44 -28.50 16 14 C 0.07 2.63 3.83 86.30 0.33 2.96 16 15 C -0.04 -1.09 2.30 -11.73 -0.03 -1.12 16 16 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 17 C -0.10 -2.96 5.08 -15.09 -0.08 -3.04 16 18 C -0.11 -3.57 8.34 71.24 0.59 -2.98 16 19 C -0.18 -4.59 8.71 27.05 0.24 -4.35 16 20 C -0.08 -1.62 5.48 29.66 0.16 -1.46 16 21 C -0.11 -2.04 5.66 30.71 0.17 -1.86 16 22 C -0.08 -1.94 2.90 -10.68 -0.03 -1.97 16 23 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 24 C -0.15 -3.50 7.91 71.98 0.57 -2.93 16 25 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.05 2.13 6.84 -2.38 -0.02 2.11 16 27 H 0.05 1.83 6.66 -2.39 -0.02 1.81 16 28 H 0.02 0.96 7.44 -2.38 -0.02 0.95 16 29 H 0.06 3.14 6.24 -2.39 -0.01 3.12 16 30 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 31 H 0.33 12.54 6.44 -89.70 -0.58 11.97 16 32 H 0.05 1.93 6.59 -2.39 -0.02 1.92 16 33 H 0.01 0.51 7.44 -2.39 -0.02 0.49 16 34 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.04 1.28 7.89 -2.38 -0.02 1.26 16 36 H 0.08 2.99 5.81 -2.39 -0.01 2.98 16 37 H 0.10 2.41 7.80 -2.91 -0.02 2.39 16 38 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.07 1.40 6.91 -2.39 -0.02 1.38 16 40 H 0.06 1.20 8.12 -2.38 -0.02 1.18 16 41 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 42 H 0.04 1.11 6.44 -2.39 -0.02 1.10 16 43 H 0.07 1.31 8.14 -2.39 -0.02 1.30 16 44 H 0.05 1.37 5.67 -2.39 -0.01 1.36 16 Total: -1.00 -57.38 322.31 4.72 -52.66 By element: Atomic # 1 Polarization: 23.73 SS G_CDS: 0.38 Total: 24.11 kcal Atomic # 6 Polarization: -44.93 SS G_CDS: 3.51 Total: -41.42 kcal Atomic # 7 Polarization: -80.22 SS G_CDS: -1.19 Total: -81.41 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Total: -57.38 4.72 -52.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191115493.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.026 kcal (2) G-P(sol) polarization free energy of solvation -57.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds