Wall clock time and date at job start Sun Mar 29 2020 23:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46769 * 2 1 4 4 C 1.52996 * 109.47310 * 240.00310 * 2 1 3 5 5 C 1.50695 * 109.47469 * 59.99409 * 4 2 1 6 6 H 1.08001 * 119.99841 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00648 * 180.02562 * 5 4 2 8 8 N 1.31519 * 119.99280 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 120.00469 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47077 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47091 * 120.00008 * 9 7 5 12 12 H 1.48495 * 109.47290 * 240.00198 * 9 7 5 13 13 C 1.53000 * 109.47275 * 119.99623 * 2 1 3 14 14 N 1.46900 * 109.47352 * 300.00469 * 13 2 1 15 15 C 1.46897 * 110.99700 * 179.97438 * 14 13 2 16 16 H 1.08997 * 112.90918 * 26.75129 * 15 14 13 17 17 C 1.53782 * 113.61657 * 255.49306 * 15 14 13 18 18 C 1.53781 * 87.08260 * 220.02235 * 17 15 14 19 19 C 1.53786 * 87.17350 * 25.39213 * 18 17 15 20 20 H 1.09000 * 113.61138 * 220.06261 * 19 18 17 21 21 C 1.52993 * 113.61559 * 89.15694 * 19 18 17 22 22 C 1.53001 * 117.49567 * 148.12733 * 21 19 18 23 23 C 1.52999 * 117.49777 * 79.50703 * 21 19 18 24 24 H 1.09002 * 109.47387 * 299.99559 * 1 2 3 25 25 H 1.08999 * 109.47113 * 60.00271 * 1 2 3 26 26 H 1.09005 * 109.46771 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47037 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47115 * 300.00294 * 3 2 1 29 29 H 1.09002 * 109.46805 * 60.00085 * 3 2 1 30 30 H 1.09000 * 109.46978 * 179.97438 * 4 2 1 31 31 H 1.09005 * 109.47052 * 299.99643 * 4 2 1 32 32 H 0.97005 * 119.99628 * 180.02562 * 8 7 5 33 33 H 1.09007 * 109.47100 * 180.02562 * 13 2 1 34 34 H 1.09005 * 109.46811 * 60.00526 * 13 2 1 35 35 H 1.00895 * 110.99667 * 303.95107 * 14 13 2 36 36 H 1.09001 * 113.61250 * 105.47053 * 17 15 14 37 37 H 1.08996 * 113.68722 * 334.58367 * 17 15 14 38 38 H 1.09002 * 113.61445 * 139.98212 * 18 17 15 39 39 H 1.09002 * 113.61408 * 270.79943 * 18 17 15 40 40 H 1.08999 * 115.55002 * 293.83531 * 21 19 18 41 41 H 1.08995 * 117.50080 * 0.02562 * 22 21 19 42 42 H 1.09009 * 117.49544 * 145.02653 * 22 21 19 43 43 H 1.09001 * 117.50006 * 214.98043 * 23 21 19 44 44 H 1.08996 * 117.50024 * 359.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9170 0.8674 -2.3806 7 6 1.8703 -0.4821 -3.7320 8 7 2.6257 -1.5519 -3.8526 9 14 1.2482 0.3988 -5.2571 10 1 0.4245 1.5665 -4.8530 11 1 2.4035 0.8647 -6.0656 12 1 0.4225 -0.5340 -6.0654 13 6 2.0400 -0.7212 1.2493 14 7 1.5503 -0.0287 2.4487 15 6 2.0209 -0.6952 3.6703 16 1 2.9563 -1.2356 3.5253 17 6 0.9349 -1.5222 4.3783 18 6 1.5076 -0.9939 5.7041 19 6 2.0242 0.2176 4.9101 20 1 3.0198 0.5441 5.2105 21 6 1.0199 1.3688 4.8262 22 6 1.5796 2.7916 4.7678 23 6 0.8975 2.2895 6.0421 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1299 1.4426 0.0005 28 1 1.6765 1.9564 -0.8899 29 1 1.6765 1.9563 0.8900 30 1 3.1300 -0.7207 -1.2494 31 1 1.6768 -1.7489 -1.2493 32 1 2.8601 -1.8833 -4.7337 33 1 3.1301 -0.7207 1.2495 34 1 1.6768 -1.7489 1.2493 35 1 1.8197 0.9436 2.4402 36 1 1.0524 -2.5983 4.2498 37 1 -0.0794 -1.1798 4.1735 38 1 0.7440 -0.7406 6.4395 39 1 2.3016 -1.6169 6.1158 40 1 0.1127 1.1608 4.2591 41 1 2.6632 2.9074 4.7888 42 1 1.0404 3.5200 4.1620 43 1 -0.0902 2.6875 6.2746 44 1 1.5321 2.0748 6.9018 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336649174.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:19:39 Heat of formation + Delta-G solvation = 21.214151 kcal Electronic energy + Delta-G solvation = -19130.370115 eV Core-core repulsion = 16469.101637 eV Total energy + Delta-G solvation = -2661.268478 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.79618 -37.19317 -35.84593 -33.00286 -31.59906 -26.95878 -26.33168 -26.05250 -25.48107 -23.63007 -22.35735 -21.97118 -21.82071 -18.45541 -17.77652 -16.25827 -16.00670 -15.89497 -14.70385 -14.56184 -14.30878 -13.70984 -13.67110 -13.16903 -12.91997 -12.56417 -12.06447 -11.94463 -11.86016 -11.66899 -11.57888 -11.05728 -10.95404 -10.85096 -10.74725 -10.70329 -10.49519 -10.44559 -10.20423 -10.10769 -9.92445 -9.75968 -9.63521 -8.95485 -8.75870 -8.29279 -7.97934 -5.93698 -3.93515 3.34010 3.41799 3.45417 3.69083 4.37147 4.49506 4.57987 4.67703 4.76895 4.98106 5.01902 5.19547 5.24604 5.40605 5.42253 5.54984 5.60060 5.74981 5.77827 5.82701 5.84607 5.89730 6.03539 6.04166 6.05856 6.22615 6.30516 6.35460 6.42039 6.48011 6.58253 6.71308 6.85003 6.87529 7.25806 7.30404 7.32016 7.53723 7.73657 7.81088 7.90710 8.07176 8.51972 9.12271 9.69198 11.18075 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.036628 B = 0.004420 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.266621 B = 6333.026073 C = 6750.128593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.058 4.058 3 C -0.128 4.128 4 C 0.033 3.967 5 C -0.505 4.505 6 H 0.059 0.941 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.069 3.931 14 N -0.671 5.671 15 C 0.065 3.935 16 H 0.066 0.934 17 C -0.124 4.124 18 C -0.136 4.136 19 C -0.083 4.083 20 H 0.068 0.932 21 C -0.121 4.121 22 C -0.181 4.181 23 C -0.183 4.183 24 H 0.042 0.958 25 H 0.053 0.947 26 H 0.038 0.962 27 H 0.039 0.961 28 H 0.063 0.937 29 H 0.033 0.967 30 H 0.012 0.988 31 H 0.014 0.986 32 H 0.258 0.742 33 H 0.020 0.980 34 H 0.064 0.936 35 H 0.341 0.659 36 H 0.059 0.941 37 H 0.087 0.913 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.116 0.884 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.091 0.909 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.891 4.449 18.856 19.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.058 4.058 3 C -0.186 4.186 4 C -0.004 4.004 5 C -0.543 4.543 6 H 0.077 0.923 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.715 3.285 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.212 1.212 13 C -0.060 4.060 14 N -0.303 5.303 15 C -0.045 4.045 16 H 0.084 0.916 17 C -0.162 4.162 18 C -0.174 4.174 19 C -0.102 4.102 20 H 0.087 0.913 21 C -0.139 4.139 22 C -0.218 4.218 23 C -0.220 4.220 24 H 0.061 0.939 25 H 0.072 0.928 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.082 0.918 29 H 0.052 0.948 30 H 0.030 0.970 31 H 0.033 0.967 32 H 0.067 0.933 33 H 0.039 0.961 34 H 0.083 0.917 35 H 0.161 0.839 36 H 0.078 0.922 37 H 0.106 0.894 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.134 0.866 41 H 0.108 0.892 42 H 0.112 0.888 43 H 0.109 0.891 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.412 4.024 18.715 19.294 hybrid contribution 0.804 0.574 -1.000 1.406 sum -1.608 4.598 17.714 18.372 Atomic orbital electron populations 1.21586 0.95069 1.00495 1.00051 1.20615 0.95800 0.94931 0.94484 1.21762 0.99616 0.96840 1.00347 1.19128 0.95844 0.95204 0.90264 1.21288 1.30573 1.11840 0.90628 0.92256 1.25019 0.95448 0.95130 0.99048 1.69985 1.37466 1.23242 1.23118 0.86615 0.78585 0.79751 0.83533 1.19775 1.21218 1.21166 1.22149 0.96072 0.98156 0.89620 1.60703 1.62718 1.06273 1.00647 1.23044 0.96620 0.95833 0.89053 0.91620 1.22991 0.99733 0.99017 0.94504 1.22778 1.00601 0.97098 0.96945 1.22183 0.97461 0.93597 0.96930 0.91331 1.21910 1.00967 0.89691 1.01345 1.22969 1.00321 0.97529 1.00971 1.22891 1.02031 1.04808 0.92312 0.93927 0.92823 0.94242 0.94212 0.91809 0.94795 0.96993 0.96719 0.93266 0.96125 0.91730 0.83879 0.92228 0.89397 0.91294 0.90583 0.86583 0.89165 0.88752 0.89079 0.89257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.25 8.06 37.16 0.30 -1.95 16 2 C -0.06 -1.17 0.60 -154.51 -0.09 -1.26 16 3 C -0.13 -2.42 7.89 37.16 0.29 -2.13 16 4 C 0.03 0.85 4.04 -27.89 -0.11 0.73 16 5 C -0.50 -13.95 7.65 -34.44 -0.26 -14.21 16 6 H 0.06 1.60 5.68 -52.49 -0.30 1.30 16 7 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -27.10 13.29 55.43 0.74 -26.37 16 9 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 10 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 C 0.07 1.21 4.51 -3.82 -0.02 1.20 16 14 N -0.67 -9.75 5.09 -105.76 -0.54 -10.29 16 15 C 0.07 0.82 4.00 -66.81 -0.27 0.55 16 16 H 0.07 0.86 7.90 -51.93 -0.41 0.45 16 17 C -0.12 -1.43 7.59 -25.92 -0.20 -1.63 16 18 C -0.14 -1.33 7.66 -25.92 -0.20 -1.53 16 19 C -0.08 -0.87 3.90 -89.71 -0.35 -1.22 16 20 H 0.07 0.71 8.12 -51.93 -0.42 0.29 16 21 C -0.12 -1.25 3.96 -90.62 -0.36 -1.61 16 22 C -0.18 -1.75 10.24 -26.73 -0.27 -2.03 16 23 C -0.18 -1.65 10.25 -26.73 -0.27 -1.93 16 24 H 0.04 0.75 7.60 -51.93 -0.39 0.35 16 25 H 0.05 1.12 6.62 -51.93 -0.34 0.78 16 26 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.06 1.30 6.62 -51.93 -0.34 0.96 16 29 H 0.03 0.54 6.57 -51.93 -0.34 0.20 16 30 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.02 0.37 8.13 -51.92 -0.42 -0.05 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.34 4.87 5.90 -39.29 -0.23 4.64 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.09 1.08 7.98 -51.93 -0.41 0.67 16 38 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 39 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.12 1.36 7.73 -51.93 -0.40 0.96 16 41 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.09 0.90 8.14 -51.92 -0.42 0.48 16 43 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 339.87 15.07 5.12 5.12 Total: -1.00 -28.60 339.87 -9.84 -38.44 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -8.23 Total: 1.94 kcal Atomic # 6 Polarization: -23.67 SS G_CDS: -1.91 Total: -25.58 kcal Atomic # 7 Polarization: -36.86 SS G_CDS: 0.20 Total: -36.66 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.60 -9.84 -38.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336649174.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.654 kcal (2) G-P(sol) polarization free energy of solvation -28.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds