Wall clock time and date at job start Sun Mar 29 2020 23:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46769 * 2 1 4 4 C 1.52996 * 109.47310 * 240.00310 * 2 1 3 5 5 C 1.50695 * 109.47469 * 59.99409 * 4 2 1 6 6 H 1.08001 * 119.99841 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00648 * 180.02562 * 5 4 2 8 8 N 1.31519 * 119.99280 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 120.00469 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47077 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47091 * 120.00008 * 9 7 5 12 12 H 1.48495 * 109.47290 * 240.00198 * 9 7 5 13 13 C 1.53000 * 109.47275 * 119.99623 * 2 1 3 14 14 N 1.46900 * 109.47352 * 300.00469 * 13 2 1 15 15 C 1.46897 * 110.99700 * 179.97438 * 14 13 2 16 16 H 1.08997 * 112.90918 * 26.75129 * 15 14 13 17 17 C 1.53782 * 113.61657 * 255.49306 * 15 14 13 18 18 C 1.53781 * 87.08260 * 220.02235 * 17 15 14 19 19 C 1.53786 * 87.17350 * 25.39213 * 18 17 15 20 20 H 1.09000 * 113.61138 * 220.06261 * 19 18 17 21 21 C 1.52993 * 113.61559 * 89.15694 * 19 18 17 22 22 C 1.53001 * 117.49567 * 148.12733 * 21 19 18 23 23 C 1.52999 * 117.49777 * 79.50703 * 21 19 18 24 24 H 1.09002 * 109.47387 * 299.99559 * 1 2 3 25 25 H 1.08999 * 109.47113 * 60.00271 * 1 2 3 26 26 H 1.09005 * 109.46771 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47037 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47115 * 300.00294 * 3 2 1 29 29 H 1.09002 * 109.46805 * 60.00085 * 3 2 1 30 30 H 1.09000 * 109.46978 * 179.97438 * 4 2 1 31 31 H 1.09005 * 109.47052 * 299.99643 * 4 2 1 32 32 H 0.97005 * 119.99628 * 180.02562 * 8 7 5 33 33 H 1.09007 * 109.47100 * 180.02562 * 13 2 1 34 34 H 1.09005 * 109.46811 * 60.00526 * 13 2 1 35 35 H 1.00895 * 110.99667 * 303.95107 * 14 13 2 36 36 H 1.09001 * 113.61250 * 105.47053 * 17 15 14 37 37 H 1.08996 * 113.68722 * 334.58367 * 17 15 14 38 38 H 1.09002 * 113.61445 * 139.98212 * 18 17 15 39 39 H 1.09002 * 113.61408 * 270.79943 * 18 17 15 40 40 H 1.08999 * 115.55002 * 293.83531 * 21 19 18 41 41 H 1.08995 * 117.50080 * 0.02562 * 22 21 19 42 42 H 1.09009 * 117.49544 * 145.02653 * 22 21 19 43 43 H 1.09001 * 117.50006 * 214.98043 * 23 21 19 44 44 H 1.08996 * 117.50024 * 359.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9170 0.8674 -2.3806 7 6 1.8703 -0.4821 -3.7320 8 7 2.6257 -1.5519 -3.8526 9 14 1.2482 0.3988 -5.2571 10 1 0.4245 1.5665 -4.8530 11 1 2.4035 0.8647 -6.0656 12 1 0.4225 -0.5340 -6.0654 13 6 2.0400 -0.7212 1.2493 14 7 1.5503 -0.0287 2.4487 15 6 2.0209 -0.6952 3.6703 16 1 2.9563 -1.2356 3.5253 17 6 0.9349 -1.5222 4.3783 18 6 1.5076 -0.9939 5.7041 19 6 2.0242 0.2176 4.9101 20 1 3.0198 0.5441 5.2105 21 6 1.0199 1.3688 4.8262 22 6 1.5796 2.7916 4.7678 23 6 0.8975 2.2895 6.0421 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1299 1.4426 0.0005 28 1 1.6765 1.9564 -0.8899 29 1 1.6765 1.9563 0.8900 30 1 3.1300 -0.7207 -1.2494 31 1 1.6768 -1.7489 -1.2493 32 1 2.8601 -1.8833 -4.7337 33 1 3.1301 -0.7207 1.2495 34 1 1.6768 -1.7489 1.2493 35 1 1.8197 0.9436 2.4402 36 1 1.0524 -2.5983 4.2498 37 1 -0.0794 -1.1798 4.1735 38 1 0.7440 -0.7406 6.4395 39 1 2.3016 -1.6169 6.1158 40 1 0.1127 1.1608 4.2591 41 1 2.6632 2.9074 4.7888 42 1 1.0404 3.5200 4.1620 43 1 -0.0902 2.6875 6.2746 44 1 1.5321 2.0748 6.9018 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336649174.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:19:39 Heat of formation + Delta-G solvation = 6.994945 kcal Electronic energy + Delta-G solvation = -19130.986706 eV Core-core repulsion = 16469.101637 eV Total energy + Delta-G solvation = -2661.885070 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.73560 -38.73577 -36.72268 -34.85967 -33.21762 -28.98192 -27.89567 -27.20897 -26.65153 -25.15384 -23.54545 -23.04303 -22.66713 -19.65408 -19.12654 -18.33316 -17.08832 -16.91148 -16.48968 -15.87623 -15.38730 -15.19461 -14.75013 -14.61706 -14.27970 -14.07508 -13.84898 -13.35539 -12.94976 -12.80913 -12.74436 -12.66342 -12.49304 -12.29095 -12.24898 -12.21182 -11.98413 -11.67055 -11.54773 -11.44468 -11.28764 -10.92437 -10.81260 -10.68434 -10.51165 -10.46230 -9.20808 -8.14011 -6.21086 1.40142 1.41024 1.53417 2.43866 2.93868 3.19959 3.35876 3.60679 3.85877 3.88867 4.05992 4.17817 4.23786 4.26742 4.39804 4.40348 4.42153 4.60630 4.65974 4.77865 4.85458 4.87341 4.95941 4.99942 5.05384 5.08990 5.12381 5.18897 5.22097 5.22552 5.35264 5.37759 5.50491 5.52216 5.54072 5.58008 5.59794 5.67991 5.88297 5.93231 6.23483 6.39303 6.62230 6.94351 7.46368 8.98689 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.036628 B = 0.004420 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.266621 B = 6333.026073 C = 6750.128593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.054 4.054 3 C -0.120 4.120 4 C 0.040 3.960 5 C -0.513 4.513 6 H 0.066 0.934 7 C -0.005 4.005 8 N -0.939 5.939 9 Si 0.957 3.043 10 H -0.260 1.260 11 H -0.282 1.282 12 H -0.282 1.282 13 C 0.082 3.918 14 N -0.663 5.663 15 C 0.053 3.947 16 H 0.060 0.940 17 C -0.126 4.126 18 C -0.124 4.124 19 C -0.073 4.073 20 H 0.074 0.926 21 C -0.131 4.131 22 C -0.184 4.184 23 C -0.171 4.171 24 H 0.067 0.933 25 H 0.038 0.962 26 H 0.028 0.972 27 H 0.034 0.966 28 H 0.047 0.953 29 H 0.066 0.934 30 H -0.018 1.018 31 H -0.018 1.018 32 H 0.259 0.741 33 H 0.012 0.988 34 H 0.052 0.948 35 H 0.344 0.656 36 H 0.056 0.944 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.103 0.897 41 H 0.092 0.908 42 H 0.095 0.905 43 H 0.098 0.902 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.628 6.047 20.364 21.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.055 4.055 3 C -0.178 4.178 4 C 0.002 3.998 5 C -0.551 4.551 6 H 0.084 0.916 7 C -0.202 4.202 8 N -0.580 5.580 9 Si 0.782 3.218 10 H -0.184 1.184 11 H -0.208 1.208 12 H -0.208 1.208 13 C -0.047 4.047 14 N -0.296 5.296 15 C -0.057 4.057 16 H 0.078 0.922 17 C -0.164 4.164 18 C -0.162 4.162 19 C -0.092 4.092 20 H 0.093 0.907 21 C -0.149 4.149 22 C -0.221 4.221 23 C -0.208 4.208 24 H 0.086 0.914 25 H 0.057 0.943 26 H 0.047 0.953 27 H 0.054 0.946 28 H 0.066 0.934 29 H 0.085 0.915 30 H 0.001 0.999 31 H 0.001 0.999 32 H 0.068 0.932 33 H 0.031 0.969 34 H 0.070 0.930 35 H 0.165 0.835 36 H 0.075 0.925 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.105 0.895 40 H 0.121 0.879 41 H 0.111 0.889 42 H 0.113 0.887 43 H 0.117 0.883 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.158 5.634 20.242 21.248 hybrid contribution 1.046 0.041 -1.428 1.771 sum -2.112 5.675 18.814 19.764 Atomic orbital electron populations 1.21480 0.94279 0.99971 1.00460 1.20483 0.96299 0.95545 0.93148 1.21665 0.99323 0.95655 1.01131 1.19012 0.93853 0.94063 0.92866 1.21653 1.30119 1.11883 0.91432 0.91562 1.25932 0.95708 0.95904 1.02610 1.70127 1.38984 1.24977 1.23955 0.85513 0.78132 0.78821 0.79307 1.18400 1.20785 1.20835 1.21842 0.95386 0.97471 0.90030 1.60658 1.62483 1.06287 1.00140 1.23200 0.96789 0.96889 0.88819 0.92229 1.22975 0.99027 0.98716 0.95680 1.22740 1.00901 0.96412 0.96123 1.22126 0.97966 0.93716 0.95380 0.90729 1.21815 1.00506 0.89963 1.02654 1.23025 1.00577 0.96942 1.01596 1.22949 1.02482 1.03292 0.92031 0.91373 0.94333 0.95261 0.94639 0.93434 0.91479 0.99942 0.99921 0.93186 0.96949 0.92980 0.83504 0.92510 0.90102 0.90273 0.89477 0.87910 0.88929 0.88668 0.88328 0.88384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.05 8.06 71.98 0.58 -3.47 16 2 C -0.05 -2.21 0.60 -52.18 -0.03 -2.24 16 3 C -0.12 -4.43 7.89 71.98 0.57 -3.86 16 4 C 0.04 2.10 4.04 29.85 0.12 2.22 16 5 C -0.51 -28.78 7.65 25.60 0.20 -28.58 16 6 H 0.07 3.57 5.68 -2.91 -0.02 3.55 16 7 C -0.01 -0.29 5.46 84.65 0.46 0.17 16 8 N -0.94 -58.12 13.29 21.45 0.28 -57.83 16 9 Si 0.96 44.88 29.54 68.60 2.03 46.91 16 10 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 12 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 13 C 0.08 2.91 4.51 86.30 0.39 3.30 16 14 N -0.66 -18.50 5.09 -488.52 -2.49 -20.99 16 15 C 0.05 1.27 4.00 45.50 0.18 1.45 16 16 H 0.06 1.52 7.90 -2.39 -0.02 1.50 16 17 C -0.13 -2.73 7.59 31.12 0.24 -2.50 16 18 C -0.12 -2.11 7.66 31.12 0.24 -1.87 16 19 C -0.07 -1.38 3.90 -10.21 -0.04 -1.42 16 20 H 0.07 1.35 8.12 -2.39 -0.02 1.33 16 21 C -0.13 -2.41 3.96 -10.80 -0.04 -2.45 16 22 C -0.18 -3.12 10.24 30.59 0.31 -2.80 16 23 C -0.17 -2.58 10.25 30.59 0.31 -2.27 16 24 H 0.07 2.28 7.60 -2.39 -0.02 2.26 16 25 H 0.04 1.58 6.62 -2.39 -0.02 1.57 16 26 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 27 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.05 1.89 6.62 -2.39 -0.02 1.88 16 29 H 0.07 2.01 6.57 -2.39 -0.02 1.99 16 30 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 31 H -0.02 -1.03 8.14 -2.38 -0.02 -1.05 16 32 H 0.26 15.14 8.31 -92.70 -0.77 14.37 16 33 H 0.01 0.45 8.13 -2.38 -0.02 0.43 16 34 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 35 H 0.34 9.17 5.90 -89.70 -0.53 8.64 16 36 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.08 1.89 7.98 -2.39 -0.02 1.87 16 38 H 0.08 1.22 8.10 -2.39 -0.02 1.20 16 39 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.10 2.20 7.73 -2.39 -0.02 2.18 16 41 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 43 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -62.10 339.87 3.72 -58.38 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: 0.41 Total: 17.84 kcal Atomic # 6 Polarization: -47.80 SS G_CDS: 3.49 Total: -44.31 kcal Atomic # 7 Polarization: -76.62 SS G_CDS: -2.20 Total: -78.82 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -62.10 3.72 -58.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336649174.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.378 kcal (2) G-P(sol) polarization free energy of solvation -62.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds