Wall clock time and date at job start Sun Mar 29 2020 23:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46951 * 2 1 4 4 C 1.52992 * 109.47195 * 120.00153 * 2 1 3 5 5 C 1.50700 * 109.47257 * 299.99960 * 4 2 1 6 6 H 1.07999 * 119.99988 * 359.97438 * 5 4 2 7 7 C 1.37885 * 120.00047 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99913 * 180.02562 * 7 5 4 9 9 Si 1.86805 * 119.99854 * 359.72512 * 7 5 4 10 10 H 1.48498 * 109.46909 * 90.00086 * 9 7 5 11 11 H 1.48497 * 109.46701 * 209.99996 * 9 7 5 12 12 H 1.48500 * 109.46867 * 330.00101 * 9 7 5 13 13 C 1.53005 * 109.47219 * 240.00443 * 2 1 3 14 14 N 1.46895 * 109.47064 * 59.99618 * 13 2 1 15 15 C 1.46899 * 111.00175 * 180.02562 * 14 13 2 16 16 H 1.09001 * 115.54521 * 9.27466 * 15 14 13 17 17 C 1.52998 * 117.50053 * 223.61101 * 15 14 13 18 18 C 1.52998 * 117.50214 * 154.98582 * 15 14 13 19 19 H 1.08995 * 117.49716 * 0.02562 * 18 15 14 20 20 C 1.52996 * 117.49755 * 214.97763 * 18 15 14 21 21 C 1.53781 * 113.61493 * 159.13677 * 20 18 15 22 22 C 1.53952 * 87.02291 * 220.05005 * 21 20 18 23 23 C 1.53778 * 87.10976 * 25.35954 * 22 21 20 24 24 H 1.08996 * 109.46790 * 299.99702 * 1 2 3 25 25 H 1.08998 * 109.47453 * 59.99752 * 1 2 3 26 26 H 1.08997 * 109.46624 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47440 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47697 * 300.00093 * 3 2 1 29 29 H 1.09005 * 109.47269 * 60.00262 * 3 2 1 30 30 H 1.09004 * 109.47330 * 179.97438 * 4 2 1 31 31 H 1.08997 * 109.47279 * 60.00470 * 4 2 1 32 32 H 0.97001 * 119.99646 * 180.02562 * 8 7 5 33 33 H 1.08999 * 109.46783 * 179.97438 * 13 2 1 34 34 H 1.09000 * 109.46608 * 299.99989 * 13 2 1 35 35 H 1.00902 * 111.00052 * 303.95423 * 14 13 2 36 36 H 1.08999 * 117.49727 * 359.97438 * 17 15 14 37 37 H 1.09003 * 117.49625 * 144.99385 * 17 15 14 38 38 H 1.09006 * 112.85481 * 290.33200 * 20 18 15 39 39 H 1.09006 * 113.61486 * 334.57418 * 21 20 18 40 40 H 1.09003 * 113.61938 * 105.46675 * 21 20 18 41 41 H 1.09004 * 113.53658 * 270.81171 * 22 21 20 42 42 H 1.08996 * 113.74300 * 139.94108 * 22 21 20 43 43 H 1.08996 * 113.61614 * 220.08831 * 23 22 21 44 44 H 1.08999 * 113.68735 * 89.19925 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.5377 -0.0109 2.4797 6 1 0.9172 0.8674 2.3806 7 6 1.8713 -0.4817 3.7320 8 7 1.4325 0.1379 4.8058 9 14 2.9395 -2.0046 3.9032 10 1 4.3689 -1.6043 3.9455 11 1 2.5877 -2.7173 5.1576 12 1 2.7109 -2.9025 2.7428 13 6 2.0401 -0.7212 -1.2493 14 7 1.5504 -0.0287 -2.4487 15 6 2.0209 -0.6950 -3.6704 16 1 2.5079 -1.6588 -3.5223 17 6 2.5399 0.1921 -4.8038 18 6 1.1881 -0.5115 -4.9407 19 1 0.2914 0.1041 -4.8700 20 6 1.1025 -1.6951 -5.9063 21 6 -0.1078 -1.6314 -6.8530 22 6 -0.2542 -3.1488 -6.6379 23 6 0.4578 -2.9477 -5.2898 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3632 -1.0277 -0.0005 27 1 3.1299 1.4426 -0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.1301 -0.7217 1.2489 31 1 1.6768 -1.7489 1.2491 32 1 1.6675 -0.1931 5.6868 33 1 3.1301 -0.7207 -1.2495 34 1 1.6767 -1.7488 -1.2493 35 1 0.5438 0.0414 -2.4401 36 1 2.5318 1.2701 -4.6431 37 1 3.3684 -0.1883 -5.4014 38 1 2.0452 -1.8950 -6.4158 39 1 -0.9417 -1.0517 -6.4572 40 1 0.1517 -1.3575 -7.8757 41 1 0.3169 -3.7463 -7.3485 42 1 -1.2879 -3.4805 -6.5405 43 1 1.1732 -3.7350 -5.0522 44 1 -0.2201 -2.7288 -4.4648 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424189725.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:19:50 Heat of formation + Delta-G solvation = 6.344054 kcal Electronic energy + Delta-G solvation = -18721.028714 eV Core-core repulsion = 16059.115420 eV Total energy + Delta-G solvation = -2661.913294 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.35465 -39.09726 -37.20857 -34.68094 -32.91118 -29.54085 -27.93878 -27.10282 -26.45281 -26.34065 -23.98148 -22.05357 -21.77090 -20.27460 -19.39536 -18.87310 -16.98927 -16.65190 -16.27913 -16.09158 -15.73839 -15.12927 -14.85573 -14.61144 -14.30346 -14.07663 -13.61574 -13.29820 -13.29467 -13.07162 -12.91292 -12.73697 -12.66142 -12.49259 -12.25582 -12.11037 -11.82005 -11.67546 -11.51503 -11.44188 -11.35122 -11.07971 -10.92586 -10.82988 -10.70351 -10.46929 -9.09147 -8.22041 -6.22380 1.35751 1.37024 1.48157 2.39265 2.88335 3.10199 3.12899 3.74547 3.83764 3.90207 4.07095 4.09447 4.14873 4.20984 4.25420 4.31901 4.45427 4.57604 4.70264 4.74478 4.85224 4.89522 4.91079 4.91296 4.97555 5.03502 5.06985 5.10387 5.12203 5.16329 5.17557 5.35113 5.35816 5.43570 5.44110 5.51478 5.61476 5.66369 5.74525 5.81174 6.19828 6.41690 6.50851 6.84850 7.40085 8.94206 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.032932 B = 0.004076 C = 0.003920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.026476 B = 6867.953674 C = 7140.395847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.049 4.049 3 C -0.109 4.109 4 C -0.003 4.003 5 C -0.504 4.504 6 H 0.045 0.955 7 C 0.001 3.999 8 N -0.955 5.955 9 Si 0.941 3.059 10 H -0.271 1.271 11 H -0.288 1.288 12 H -0.250 1.250 13 C 0.084 3.916 14 N -0.656 5.656 15 C 0.013 3.987 16 H 0.093 0.907 17 C -0.164 4.164 18 C -0.140 4.140 19 H 0.103 0.897 20 C -0.079 4.079 21 C -0.131 4.131 22 C -0.141 4.141 23 C -0.139 4.139 24 H 0.037 0.963 25 H 0.065 0.935 26 H 0.044 0.956 27 H 0.037 0.963 28 H 0.065 0.935 29 H 0.028 0.972 30 H 0.011 0.989 31 H 0.013 0.987 32 H 0.262 0.738 33 H 0.064 0.936 34 H 0.027 0.973 35 H 0.343 0.657 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.093 0.907 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.086 0.914 42 H 0.068 0.932 43 H 0.062 0.938 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.662 -5.517 -24.716 25.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.050 4.050 3 C -0.166 4.166 4 C -0.040 4.040 5 C -0.542 4.542 6 H 0.063 0.937 7 C -0.195 4.195 8 N -0.596 5.596 9 Si 0.765 3.235 10 H -0.196 1.196 11 H -0.214 1.214 12 H -0.173 1.173 13 C -0.045 4.045 14 N -0.288 5.288 15 C -0.097 4.097 16 H 0.111 0.889 17 C -0.202 4.202 18 C -0.159 4.159 19 H 0.121 0.879 20 C -0.098 4.098 21 C -0.168 4.168 22 C -0.178 4.178 23 C -0.177 4.177 24 H 0.056 0.944 25 H 0.084 0.916 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.083 0.917 29 H 0.047 0.953 30 H 0.029 0.971 31 H 0.031 0.969 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.046 0.954 35 H 0.164 0.836 36 H 0.108 0.892 37 H 0.119 0.881 38 H 0.112 0.888 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.105 0.895 42 H 0.087 0.913 43 H 0.081 0.919 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.167 -5.065 -24.524 25.042 hybrid contribution -0.106 -1.122 1.061 1.548 sum -0.273 -6.187 -23.463 24.266 Atomic orbital electron populations 1.21688 0.94972 1.00694 1.00766 1.20364 0.95624 0.95895 0.93085 1.21508 0.99454 0.95560 1.00063 1.19588 0.95528 0.95480 0.93447 1.21428 1.30214 1.12084 0.90480 0.93730 1.25926 0.97614 1.00192 0.95749 1.70065 1.48265 1.42868 0.98450 0.85797 0.79355 0.80377 0.77927 1.19602 1.21377 1.17338 1.21876 0.99452 0.94425 0.88743 1.60250 1.16299 1.52178 1.00057 1.22440 1.04274 0.97284 0.85738 0.88902 1.23287 0.96862 0.99088 1.00956 1.22693 0.95497 0.99949 0.97751 0.87858 1.22162 0.98693 0.93108 0.95791 1.22966 0.97655 0.96530 0.99671 1.22852 1.01000 0.96779 0.97190 1.22915 0.99745 0.97607 0.97423 0.94412 0.91643 0.93668 0.94393 0.91655 0.95262 0.97084 0.96864 0.92875 0.91792 0.95431 0.83570 0.89165 0.88055 0.88850 0.90198 0.90823 0.89543 0.91309 0.91911 0.90993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.49 7.89 71.98 0.57 -3.93 16 2 C -0.05 -1.87 0.60 -52.18 -0.03 -1.91 16 3 C -0.11 -4.19 8.06 71.98 0.58 -3.60 16 4 C 0.00 -0.12 3.11 29.85 0.09 -0.03 16 5 C -0.50 -28.58 8.20 25.60 0.21 -28.37 16 6 H 0.04 2.77 5.92 -2.91 -0.02 2.75 16 7 C 0.00 0.05 5.47 84.66 0.46 0.51 16 8 N -0.95 -60.44 13.96 21.45 0.30 -60.15 16 9 Si 0.94 45.04 27.47 68.60 1.88 46.93 16 10 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 11 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 12 H -0.25 -11.14 6.54 99.48 0.65 -10.49 16 13 C 0.08 2.63 4.50 86.31 0.39 3.02 16 14 N -0.66 -17.22 5.96 -491.58 -2.93 -20.15 16 15 C 0.01 0.29 5.81 44.91 0.26 0.55 16 16 H 0.09 2.11 7.90 -2.39 -0.02 2.09 16 17 C -0.16 -3.18 10.15 30.59 0.31 -2.87 16 18 C -0.14 -2.52 5.33 -10.80 -0.06 -2.57 16 19 H 0.10 1.91 7.97 -2.39 -0.02 1.89 16 20 C -0.08 -1.21 3.87 -10.27 -0.04 -1.25 16 21 C -0.13 -1.75 7.65 31.18 0.24 -1.51 16 22 C -0.14 -1.86 8.09 31.18 0.25 -1.60 16 23 C -0.14 -2.22 7.49 31.12 0.23 -1.98 16 24 H 0.04 1.60 6.62 -2.39 -0.02 1.58 16 25 H 0.06 1.95 6.57 -2.39 -0.02 1.94 16 26 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.06 2.22 7.60 -2.39 -0.02 2.20 16 29 H 0.03 1.28 6.62 -2.38 -0.02 1.26 16 30 H 0.01 0.51 7.58 -2.38 -0.02 0.49 16 31 H 0.01 0.61 7.19 -2.39 -0.02 0.59 16 32 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 33 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.34 8.59 6.72 -89.69 -0.60 7.99 16 36 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.10 1.70 8.13 -2.39 -0.02 1.68 16 38 H 0.09 1.35 8.07 -2.38 -0.02 1.33 16 39 H 0.08 1.09 7.98 -2.38 -0.02 1.08 16 40 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 42 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.07 1.29 8.10 -2.39 -0.02 1.27 16 Total: -1.00 -62.81 338.92 3.01 -59.80 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: 0.28 Total: 19.11 kcal Atomic # 6 Polarization: -49.01 SS G_CDS: 3.47 Total: -45.54 kcal Atomic # 7 Polarization: -77.67 SS G_CDS: -2.63 Total: -80.30 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.88 Total: 46.93 kcal Total: -62.81 3.01 -59.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424189725.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.147 kcal (2) G-P(sol) polarization free energy of solvation -62.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds