Wall clock time and date at job start Sun Mar 29 2020 23:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47169 * 2 1 4 4 H 1.09000 * 110.67327 * 56.77978 * 3 2 1 5 5 C 1.54887 * 110.75664 * 293.54348 * 3 2 1 6 6 C 1.54262 * 104.19724 * 203.56239 * 5 3 2 7 7 C 1.53871 * 106.59965 * 23.60553 * 6 5 3 8 8 H 1.09004 * 110.03456 * 240.66866 * 7 6 5 9 9 N 1.46902 * 110.03198 * 119.28722 * 7 6 5 10 10 C 1.46856 * 110.99619 * 62.09449 * 9 7 6 11 11 C 1.53039 * 109.51787 * 185.84053 * 10 9 7 12 12 C 1.53123 * 109.31189 * 300.79882 * 11 10 9 13 13 C 1.50697 * 109.52128 * 177.58251 * 12 11 10 14 14 H 1.07999 * 120.00363 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99748 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00143 * 180.02562 * 15 13 12 17 17 Si 1.86796 * 120.00172 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.47263 * 89.99879 * 17 15 13 19 19 H 1.48501 * 109.47539 * 210.00057 * 17 15 13 20 20 H 1.48509 * 109.47118 * 330.00222 * 17 15 13 21 21 C 1.53203 * 109.11533 * 57.63615 * 12 11 10 22 22 C 1.46846 * 111.00121 * 186.30332 * 9 7 6 23 23 C 1.54268 * 106.64281 * 359.97438 * 7 6 5 24 24 H 1.08999 * 109.47158 * 180.02562 * 1 2 3 25 25 H 1.08991 * 109.47139 * 300.00539 * 1 2 3 26 26 H 1.09001 * 109.46805 * 60.00217 * 1 2 3 27 27 H 1.08997 * 109.47568 * 239.99341 * 2 1 3 28 28 H 1.09001 * 109.46805 * 119.99783 * 2 1 3 29 29 H 1.09001 * 110.48677 * 84.87460 * 5 3 2 30 30 H 1.09006 * 110.59469 * 322.29135 * 5 3 2 31 31 H 1.09007 * 110.02620 * 264.32539 * 6 5 3 32 32 H 1.08996 * 110.03313 * 142.89394 * 6 5 3 33 33 H 1.09000 * 109.46462 * 65.82793 * 10 9 7 34 34 H 1.09002 * 109.45930 * 305.85061 * 10 9 7 35 35 H 1.09002 * 109.50563 * 60.76214 * 11 10 9 36 36 H 1.09003 * 109.50107 * 180.84195 * 11 10 9 37 37 H 1.08997 * 109.52263 * 297.77214 * 12 11 10 38 38 H 0.96992 * 120.00120 * 180.02562 * 16 15 13 39 39 H 1.08997 * 109.49417 * 182.41991 * 21 12 11 40 40 H 1.09007 * 109.52297 * 62.34418 * 21 12 11 41 41 H 1.09004 * 109.46012 * 294.17710 * 22 9 7 42 42 H 1.08997 * 109.46257 * 54.15030 * 22 9 7 43 43 H 1.08996 * 110.48491 * 95.08657 * 23 7 6 44 44 H 1.08994 * 110.48769 * 217.73409 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6416 1.9916 0.8531 5 6 1.6776 2.1529 -1.3278 6 6 2.7160 3.2876 -1.4455 7 6 3.9309 2.8607 -0.6033 8 1 4.1047 3.5831 0.1943 9 7 5.1227 2.7566 -1.4558 10 6 5.4578 4.0559 -2.0527 11 6 6.6105 3.8811 -3.0441 12 6 7.8262 3.3073 -2.3110 13 6 8.9449 3.0777 -3.2943 14 1 8.8043 3.3170 -4.3380 15 6 10.1481 2.5619 -2.8614 16 7 11.1247 2.3619 -3.7193 17 14 10.3918 2.1485 -1.0561 18 1 9.9842 0.7417 -0.8110 19 1 11.8228 2.3188 -0.6979 20 1 9.5618 3.0564 -0.2240 21 6 7.4364 1.9778 -1.6571 22 6 6.2598 2.2077 -0.7061 23 6 3.5892 1.4818 -0.0020 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 0.6687 2.5625 -1.2782 30 1 1.7679 1.4644 -2.1681 31 1 2.2995 4.2166 -1.0561 32 1 3.0106 3.4175 -2.4868 33 1 5.7564 4.7503 -1.2674 34 1 4.5864 4.4511 -2.5749 35 1 6.3078 3.1975 -3.8373 36 1 6.8689 4.8480 -3.4759 37 1 8.1530 4.0086 -1.5433 38 1 11.9709 1.9987 -3.4148 39 1 8.2853 1.5850 -1.0976 40 1 7.1470 1.2637 -2.4282 41 1 6.5545 2.9108 0.0730 42 1 5.9710 1.2607 -0.2502 43 1 3.9899 0.6834 -0.6265 44 1 3.9750 1.4026 1.0143 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173289449.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:33:03 Heat of formation + Delta-G solvation = -23.995775 kcal Electronic energy + Delta-G solvation = -19454.746642 eV Core-core repulsion = 16791.517714 eV Total energy + Delta-G solvation = -2663.228928 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.47884 -37.32309 -34.15840 -32.43788 -31.04127 -30.41963 -28.45530 -27.13978 -24.90975 -23.18163 -22.12840 -21.58109 -19.85948 -19.39101 -18.78562 -16.67139 -16.18388 -15.77766 -14.70676 -14.48158 -14.30259 -13.71171 -13.66780 -13.26649 -13.07512 -12.85694 -12.78029 -12.30206 -12.13239 -11.99009 -11.71561 -11.27219 -11.09908 -10.94404 -10.81041 -10.71682 -10.55465 -10.50115 -10.46031 -10.43240 -9.99234 -9.81933 -9.56510 -8.99802 -8.86924 -8.47391 -7.85470 -6.02416 -4.00328 3.29615 3.39699 3.42090 4.22865 4.45110 4.49416 4.63235 4.81431 5.09848 5.14812 5.22405 5.28925 5.44102 5.52793 5.54780 5.55221 5.61876 5.73283 5.75663 5.80126 5.81960 5.87748 5.95829 6.00593 6.05917 6.08173 6.10392 6.18085 6.20678 6.25333 6.33806 6.43786 6.45385 6.51500 6.80598 6.90679 7.00166 7.27915 7.54212 7.61798 7.72005 7.84566 8.59078 9.02475 9.60947 11.11233 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.036452 B = 0.005031 C = 0.004705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.939955 B = 5563.829212 C = 5949.842716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C -0.092 4.092 4 H 0.070 0.930 5 C -0.112 4.112 6 C -0.119 4.119 7 C 0.079 3.921 8 H 0.034 0.966 9 N -0.526 5.526 10 C 0.054 3.946 11 C -0.096 4.096 12 C 0.013 3.987 13 C -0.509 4.509 14 H 0.073 0.927 15 C 0.068 3.932 16 N -0.904 5.904 17 Si 0.887 3.113 18 H -0.279 1.279 19 H -0.299 1.299 20 H -0.268 1.268 21 C -0.116 4.116 22 C 0.054 3.946 23 C -0.113 4.113 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.023 0.977 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.056 0.944 37 H 0.020 0.980 38 H 0.262 0.738 39 H 0.046 0.954 40 H 0.068 0.932 41 H 0.022 0.978 42 H 0.064 0.936 43 H 0.080 0.920 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.569 -1.444 8.534 21.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.153 4.153 3 C -0.110 4.110 4 H 0.089 0.911 5 C -0.150 4.150 6 C -0.157 4.157 7 C -0.030 4.030 8 H 0.052 0.948 9 N -0.251 5.251 10 C -0.073 4.073 11 C -0.133 4.133 12 C -0.006 4.006 13 C -0.547 4.547 14 H 0.091 0.909 15 C -0.133 4.133 16 N -0.543 5.543 17 Si 0.718 3.282 18 H -0.206 1.206 19 H -0.226 1.226 20 H -0.193 1.193 21 C -0.153 4.153 22 C -0.073 4.073 23 C -0.151 4.151 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.041 0.959 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.038 0.962 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.087 0.913 41 H 0.040 0.960 42 H 0.082 0.918 43 H 0.099 0.901 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -19.479 -1.813 8.124 21.183 hybrid contribution 0.559 0.281 1.697 1.808 sum -18.920 -1.532 9.821 21.372 Atomic orbital electron populations 1.21775 0.96112 1.01265 1.01713 1.21506 0.95571 0.96245 1.02013 1.22133 0.95328 0.95666 0.97919 0.91131 1.22353 0.97910 0.97373 0.97371 1.22230 0.94562 0.97624 1.01266 1.22244 0.91019 0.96179 0.93523 0.94788 1.62115 1.03887 1.25846 1.33283 1.22216 0.98731 0.89019 0.97376 1.21488 0.93941 1.00538 0.97377 1.19193 0.93712 0.92117 0.95545 1.21078 0.95661 1.42162 0.95758 0.90894 1.25026 0.95922 0.95184 0.97179 1.69904 1.04417 1.45641 1.34307 0.86847 0.75978 0.78901 0.86477 1.20579 1.22635 1.19296 1.22018 0.94201 1.01297 0.97817 1.22188 0.91496 0.98268 0.95361 1.22526 0.94883 0.97554 1.00146 0.93075 0.93045 0.92597 0.91740 0.92260 0.92250 0.91370 0.92431 0.90416 0.95899 0.91650 0.91860 0.92531 0.96176 0.92784 0.93550 0.91330 0.96013 0.91785 0.90122 0.92312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.76 37.16 0.36 -0.83 16 2 C -0.12 -1.05 5.45 -26.73 -0.15 -1.20 16 3 C -0.09 -0.92 2.92 -88.59 -0.26 -1.18 16 4 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 5 C -0.11 -1.16 5.47 -25.08 -0.14 -1.29 16 6 C -0.12 -1.41 5.87 -25.62 -0.15 -1.56 16 7 C 0.08 1.08 2.67 -66.59 -0.18 0.90 16 8 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 9 N -0.53 -8.82 4.42 -225.34 -1.00 -9.81 16 10 C 0.05 0.93 5.22 -3.83 -0.02 0.91 16 11 C -0.10 -1.95 5.31 -26.65 -0.14 -2.09 16 12 C 0.01 0.32 1.75 -91.61 -0.16 0.16 16 13 C -0.51 -14.50 9.15 -34.44 -0.32 -14.81 16 14 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 15 C 0.07 1.99 5.45 -17.82 -0.10 1.89 16 16 N -0.90 -28.09 13.96 55.43 0.77 -27.32 16 17 Si 0.89 22.39 24.37 -169.99 -4.14 18.25 16 18 H -0.28 -6.83 6.89 56.52 0.39 -6.44 16 19 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 20 H -0.27 -6.51 6.53 56.52 0.37 -6.15 16 21 C -0.12 -2.55 4.84 -26.61 -0.13 -2.68 16 22 C 0.05 1.00 5.22 -3.84 -0.02 0.98 16 23 C -0.11 -1.38 4.54 -25.03 -0.11 -1.49 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.43 7.40 -51.93 -0.38 0.05 16 27 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.54 8.01 -51.93 -0.42 0.12 16 30 H 0.07 0.74 8.02 -51.93 -0.42 0.32 16 31 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 32 H 0.08 1.00 6.56 -51.93 -0.34 0.66 16 33 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.99 6.31 -51.93 -0.33 0.66 16 35 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.02 0.50 7.19 -51.93 -0.37 0.13 16 38 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 39 H 0.05 1.08 3.39 -51.93 -0.18 0.90 16 40 H 0.07 1.55 8.14 -51.92 -0.42 1.13 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 1.06 6.51 -51.93 -0.34 0.73 16 43 H 0.08 1.08 7.45 -51.93 -0.39 0.70 16 44 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 319.86 15.07 4.82 4.82 Total: -1.00 -29.71 319.86 -9.30 -39.01 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -8.25 Total: -2.65 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: -1.50 Total: -22.30 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: -0.22 Total: -37.13 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -4.14 Total: 18.25 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.71 -9.30 -39.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173289449.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.014 kcal (2) G-P(sol) polarization free energy of solvation -29.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds