Wall clock time and date at job start Sun Mar 29 2020 23:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47169 * 2 1 4 4 H 1.09000 * 110.67327 * 56.77978 * 3 2 1 5 5 C 1.54887 * 110.75664 * 293.54348 * 3 2 1 6 6 C 1.54262 * 104.19724 * 203.56239 * 5 3 2 7 7 C 1.53871 * 106.59965 * 23.60553 * 6 5 3 8 8 H 1.09004 * 110.03456 * 240.66866 * 7 6 5 9 9 N 1.46902 * 110.03198 * 119.28722 * 7 6 5 10 10 C 1.46856 * 110.99619 * 62.09449 * 9 7 6 11 11 C 1.53039 * 109.51787 * 185.84053 * 10 9 7 12 12 C 1.53123 * 109.31189 * 300.79882 * 11 10 9 13 13 C 1.50697 * 109.52128 * 177.58251 * 12 11 10 14 14 H 1.07999 * 120.00363 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99748 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00143 * 180.02562 * 15 13 12 17 17 Si 1.86796 * 120.00172 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.47263 * 89.99879 * 17 15 13 19 19 H 1.48501 * 109.47539 * 210.00057 * 17 15 13 20 20 H 1.48509 * 109.47118 * 330.00222 * 17 15 13 21 21 C 1.53203 * 109.11533 * 57.63615 * 12 11 10 22 22 C 1.46846 * 111.00121 * 186.30332 * 9 7 6 23 23 C 1.54268 * 106.64281 * 359.97438 * 7 6 5 24 24 H 1.08999 * 109.47158 * 180.02562 * 1 2 3 25 25 H 1.08991 * 109.47139 * 300.00539 * 1 2 3 26 26 H 1.09001 * 109.46805 * 60.00217 * 1 2 3 27 27 H 1.08997 * 109.47568 * 239.99341 * 2 1 3 28 28 H 1.09001 * 109.46805 * 119.99783 * 2 1 3 29 29 H 1.09001 * 110.48677 * 84.87460 * 5 3 2 30 30 H 1.09006 * 110.59469 * 322.29135 * 5 3 2 31 31 H 1.09007 * 110.02620 * 264.32539 * 6 5 3 32 32 H 1.08996 * 110.03313 * 142.89394 * 6 5 3 33 33 H 1.09000 * 109.46462 * 65.82793 * 10 9 7 34 34 H 1.09002 * 109.45930 * 305.85061 * 10 9 7 35 35 H 1.09002 * 109.50563 * 60.76214 * 11 10 9 36 36 H 1.09003 * 109.50107 * 180.84195 * 11 10 9 37 37 H 1.08997 * 109.52263 * 297.77214 * 12 11 10 38 38 H 0.96992 * 120.00120 * 180.02562 * 16 15 13 39 39 H 1.08997 * 109.49417 * 182.41991 * 21 12 11 40 40 H 1.09007 * 109.52297 * 62.34418 * 21 12 11 41 41 H 1.09004 * 109.46012 * 294.17710 * 22 9 7 42 42 H 1.08997 * 109.46257 * 54.15030 * 22 9 7 43 43 H 1.08996 * 110.48491 * 95.08657 * 23 7 6 44 44 H 1.08994 * 110.48769 * 217.73409 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6416 1.9916 0.8531 5 6 1.6776 2.1529 -1.3278 6 6 2.7160 3.2876 -1.4455 7 6 3.9309 2.8607 -0.6033 8 1 4.1047 3.5831 0.1943 9 7 5.1227 2.7566 -1.4558 10 6 5.4578 4.0559 -2.0527 11 6 6.6105 3.8811 -3.0441 12 6 7.8262 3.3073 -2.3110 13 6 8.9449 3.0777 -3.2943 14 1 8.8043 3.3170 -4.3380 15 6 10.1481 2.5619 -2.8614 16 7 11.1247 2.3619 -3.7193 17 14 10.3918 2.1485 -1.0561 18 1 9.9842 0.7417 -0.8110 19 1 11.8228 2.3188 -0.6979 20 1 9.5618 3.0564 -0.2240 21 6 7.4364 1.9778 -1.6571 22 6 6.2598 2.2077 -0.7061 23 6 3.5892 1.4818 -0.0020 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 0.6687 2.5625 -1.2782 30 1 1.7679 1.4644 -2.1681 31 1 2.2995 4.2166 -1.0561 32 1 3.0106 3.4175 -2.4868 33 1 5.7564 4.7503 -1.2674 34 1 4.5864 4.4511 -2.5749 35 1 6.3078 3.1975 -3.8373 36 1 6.8689 4.8480 -3.4759 37 1 8.1530 4.0086 -1.5433 38 1 11.9709 1.9987 -3.4148 39 1 8.2853 1.5850 -1.0976 40 1 7.1470 1.2637 -2.4282 41 1 6.5545 2.9108 0.0730 42 1 5.9710 1.2607 -0.2502 43 1 3.9899 0.6834 -0.6265 44 1 3.9750 1.4026 1.0143 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173289449.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:33:02 Heat of formation + Delta-G solvation = -41.386913 kcal Electronic energy + Delta-G solvation = -19455.500778 eV Core-core repulsion = 16791.517714 eV Total energy + Delta-G solvation = -2663.983064 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.66885 -38.57867 -35.64820 -34.04102 -32.50371 -31.92258 -29.44202 -28.48847 -26.45494 -24.35228 -23.52277 -22.99229 -20.76902 -20.66156 -20.24570 -18.82687 -17.50141 -16.81739 -16.26545 -15.75706 -15.41668 -15.21161 -14.87765 -14.70765 -14.48937 -14.23595 -14.04455 -13.68893 -13.48783 -13.21799 -12.86319 -12.77700 -12.26578 -12.23354 -12.11257 -11.97599 -11.86850 -11.72004 -11.61801 -11.36268 -11.35855 -11.23281 -11.21956 -10.96052 -10.73956 -10.60039 -9.16705 -8.30475 -6.33389 1.28047 1.32940 1.43769 2.31341 2.97066 3.04765 3.61124 3.76602 3.98101 4.12562 4.14493 4.23545 4.32451 4.33674 4.45159 4.51756 4.59035 4.64399 4.67289 4.71097 4.75053 4.79305 4.84621 4.89889 4.92423 4.94813 5.01938 5.11283 5.15747 5.19401 5.25995 5.29938 5.32148 5.34021 5.39766 5.49842 5.51626 5.66418 5.68100 5.77580 6.21889 6.32635 6.38770 6.73564 7.31783 8.86825 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.036452 B = 0.005031 C = 0.004705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.939955 B = 5563.829212 C = 5949.842716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C -0.084 4.084 4 H 0.081 0.919 5 C -0.108 4.108 6 C -0.117 4.117 7 C 0.076 3.924 8 H 0.037 0.963 9 N -0.535 5.535 10 C 0.063 3.937 11 C -0.092 4.092 12 C 0.012 3.988 13 C -0.517 4.517 14 H 0.031 0.969 15 C 0.010 3.990 16 N -0.952 5.952 17 Si 0.951 3.049 18 H -0.265 1.265 19 H -0.298 1.298 20 H -0.251 1.251 21 C -0.113 4.113 22 C 0.063 3.937 23 C -0.113 4.113 24 H 0.055 0.945 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.026 0.974 34 H 0.090 0.910 35 H 0.050 0.950 36 H 0.054 0.946 37 H 0.015 0.985 38 H 0.265 0.735 39 H 0.037 0.963 40 H 0.054 0.946 41 H 0.023 0.977 42 H 0.084 0.916 43 H 0.066 0.934 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.070 -1.507 11.003 24.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.152 4.152 3 C -0.103 4.103 4 H 0.100 0.900 5 C -0.146 4.146 6 C -0.155 4.155 7 C -0.032 4.032 8 H 0.055 0.945 9 N -0.261 5.261 10 C -0.064 4.064 11 C -0.130 4.130 12 C -0.007 4.007 13 C -0.555 4.555 14 H 0.050 0.950 15 C -0.187 4.187 16 N -0.593 5.593 17 Si 0.778 3.222 18 H -0.191 1.191 19 H -0.226 1.226 20 H -0.175 1.175 21 C -0.151 4.151 22 C -0.065 4.065 23 C -0.151 4.151 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.044 0.956 34 H 0.108 0.892 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.033 0.967 38 H 0.074 0.926 39 H 0.055 0.945 40 H 0.073 0.927 41 H 0.042 0.958 42 H 0.102 0.898 43 H 0.084 0.916 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -22.013 -1.872 10.595 24.502 hybrid contribution 1.334 0.328 0.802 1.590 sum -20.679 -1.544 11.397 23.662 Atomic orbital electron populations 1.21755 0.95026 1.01778 1.02087 1.21487 0.96497 0.95547 1.01711 1.22100 0.93675 0.96358 0.98148 0.90048 1.22331 0.98385 0.96713 0.97183 1.22228 0.94181 0.98893 1.00201 1.22390 0.90073 0.97254 0.93451 0.94548 1.62094 1.04294 1.25546 1.34120 1.22095 0.98107 0.89507 0.96725 1.21391 0.94069 0.99813 0.97709 1.19159 0.93521 0.93373 0.94624 1.21415 0.97571 1.41507 0.95009 0.95034 1.25900 0.95520 0.95142 1.02103 1.70055 1.05179 1.47237 1.36805 0.85800 0.76021 0.79625 0.80713 1.19070 1.22576 1.17491 1.21870 0.95678 0.99420 0.98083 1.22042 0.90615 0.99565 0.94281 1.22521 0.96544 0.96073 0.99958 0.92591 0.92365 0.92491 0.92673 0.92009 0.90504 0.92217 0.90910 0.91601 0.95592 0.89161 0.93166 0.92703 0.96680 0.92606 0.94500 0.92711 0.95831 0.89769 0.91580 0.91720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.76 71.98 0.70 -1.22 16 2 C -0.11 -1.79 5.45 30.60 0.17 -1.63 16 3 C -0.08 -1.43 2.92 -9.48 -0.03 -1.46 16 4 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 5 C -0.11 -1.90 5.47 31.67 0.17 -1.73 16 6 C -0.12 -2.42 5.87 31.32 0.18 -2.23 16 7 C 0.08 1.86 2.67 45.64 0.12 1.98 16 8 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 9 N -0.54 -16.78 4.42 -866.86 -3.83 -20.61 16 10 C 0.06 2.04 5.22 86.32 0.45 2.49 16 11 C -0.09 -3.74 5.31 30.65 0.16 -3.58 16 12 C 0.01 0.58 1.75 -11.43 -0.02 0.56 16 13 C -0.52 -30.48 9.15 25.60 0.23 -30.24 16 14 H 0.03 2.05 7.99 -2.91 -0.02 2.03 16 15 C 0.01 0.59 5.45 84.66 0.46 1.05 16 16 N -0.95 -61.08 13.96 21.45 0.30 -60.78 16 17 Si 0.95 46.30 24.37 68.60 1.67 47.98 16 18 H -0.26 -12.22 6.89 99.48 0.69 -11.53 16 19 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 20 H -0.25 -11.41 6.53 99.48 0.65 -10.76 16 21 C -0.11 -4.88 4.84 30.67 0.15 -4.73 16 22 C 0.06 2.16 5.22 86.32 0.45 2.61 16 23 C -0.11 -2.44 4.54 31.70 0.14 -2.30 16 24 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.06 0.72 7.40 -2.39 -0.02 0.70 16 27 H 0.05 0.96 8.10 -2.39 -0.02 0.94 16 28 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.08 1.10 8.01 -2.39 -0.02 1.08 16 30 H 0.06 1.16 8.02 -2.38 -0.02 1.14 16 31 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 32 H 0.07 1.53 6.56 -2.39 -0.02 1.51 16 33 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.09 2.49 6.31 -2.39 -0.02 2.48 16 35 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.02 0.74 7.19 -2.39 -0.02 0.72 16 38 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 39 H 0.04 1.65 3.39 -2.39 -0.01 1.64 16 40 H 0.05 2.48 8.14 -2.38 -0.02 2.46 16 41 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 42 H 0.08 2.57 6.51 -2.39 -0.02 2.55 16 43 H 0.07 1.63 7.45 -2.39 -0.02 1.62 16 44 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -65.32 319.86 2.34 -62.98 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: 0.85 Total: 10.85 kcal Atomic # 6 Polarization: -43.76 SS G_CDS: 3.35 Total: -40.41 kcal Atomic # 7 Polarization: -77.85 SS G_CDS: -3.53 Total: -81.39 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 1.67 Total: 47.98 kcal Total: -65.32 2.34 -62.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173289449.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.588 kcal (2) G-P(sol) polarization free energy of solvation -65.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds