Wall clock time and date at job start Sun Mar 29 2020 22:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.29317 * 126.06725 * 2 1 4 4 N 1.26096 * 117.97295 * 179.97438 * 3 2 1 5 5 C 1.30243 * 117.62046 * 0.02562 * 4 3 2 6 6 N 1.38702 * 126.16771 * 179.97438 * 5 4 3 7 7 C 1.46501 * 120.00005 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.47165 * 270.00667 * 7 6 5 9 9 H 1.07996 * 120.00008 * 359.97438 * 8 7 6 10 10 C 1.37874 * 119.99888 * 180.02562 * 8 7 6 11 11 N 1.31515 * 120.00127 * 359.97438 * 10 8 7 12 12 Si 1.86807 * 120.00055 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.46876 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47055 * 119.99710 * 12 10 8 15 15 H 1.48497 * 109.46973 * 239.99924 * 12 10 8 16 16 C 1.46496 * 120.00286 * 0.03062 * 6 5 4 17 17 C 1.53002 * 109.47037 * 269.99897 * 16 6 5 18 18 C 1.47206 * 109.47021 * 179.97438 * 17 16 6 19 19 N 7.63453 * 158.55991 * 328.90420 * 2 1 3 20 20 S 1.76490 * 126.06542 * 180.26762 * 2 1 3 21 21 H 1.08994 * 109.47435 * 90.02094 * 1 2 3 22 22 H 1.09005 * 109.47026 * 210.02209 * 1 2 3 23 23 H 1.08999 * 109.46972 * 330.01821 * 1 2 3 24 24 H 1.08997 * 109.47130 * 30.00380 * 7 6 5 25 25 H 1.08998 * 109.47021 * 150.00434 * 7 6 5 26 26 H 0.96997 * 120.00272 * 179.97438 * 11 10 8 27 27 H 1.08996 * 109.47565 * 149.99328 * 16 6 5 28 28 H 1.09004 * 109.47374 * 29.99523 * 16 6 5 29 29 H 1.08996 * 109.47407 * 59.99335 * 17 16 6 30 30 H 1.09000 * 109.46986 * 299.99564 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2683 1.0453 0.0000 4 7 3.5167 0.8678 0.0005 5 6 3.9520 -0.3598 0.0005 6 7 5.2809 -0.7570 0.0005 7 6 5.6194 -2.1824 -0.0002 8 6 5.7351 -2.6718 1.4205 9 1 5.5732 -1.9893 2.2416 10 6 6.0488 -3.9907 1.6718 11 7 6.2465 -4.8217 0.6718 12 14 6.1929 -4.5973 3.4328 13 1 5.9263 -3.4739 4.3666 14 1 5.2042 -5.6805 3.6657 15 1 7.5634 -5.1194 3.6658 16 6 6.3461 0.2487 0.0012 17 6 6.7172 0.5996 -1.4411 18 6 7.7871 1.6107 -1.4404 19 7 8.6132 2.3896 -1.4413 20 16 2.5459 -1.4266 -0.0067 21 1 -0.3634 -0.0004 -1.0276 22 1 -0.3633 -0.8898 0.5142 23 1 -0.3633 0.8901 0.5135 24 1 4.8376 -2.7412 -0.5144 25 1 6.5693 -2.3300 -0.5139 26 1 6.4675 -5.7494 0.8486 27 1 7.2212 -0.1491 0.5150 28 1 5.9992 1.1451 0.5154 29 1 5.8421 0.9974 -1.9549 30 1 7.0641 -0.2967 -1.9553 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003077021.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:56:48 Heat of formation + Delta-G solvation = 84.703631 kcal Electronic energy + Delta-G solvation = -15677.389772 eV Core-core repulsion = 13020.994832 eV Total energy + Delta-G solvation = -2656.394940 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 252.074 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.22627 -37.53158 -36.19778 -33.11011 -32.27900 -31.12084 -28.52378 -26.58999 -24.79381 -23.72761 -21.86529 -18.86903 -18.38570 -17.55550 -16.67713 -16.24723 -15.14718 -15.06468 -14.76257 -13.95927 -13.84092 -13.53068 -12.97502 -12.69688 -12.62049 -12.44267 -12.33477 -12.19899 -11.87762 -11.66111 -11.17384 -10.96095 -10.77702 -10.40047 -10.30772 -9.73901 -9.52616 -9.41987 -8.91920 -8.72181 -7.26373 -6.32726 -4.43167 1.27841 1.38019 2.02275 2.81162 2.90349 3.14252 3.23265 3.25479 3.31969 3.42154 4.20339 4.23812 4.79971 4.99900 5.13847 5.18683 5.31565 5.53685 5.58933 5.61411 5.83732 5.90644 6.11323 6.23417 6.57828 6.85030 7.36520 7.60483 7.65243 7.67473 7.80206 8.62977 9.25350 9.37364 10.72387 Molecular weight = 252.07amu Principal moments of inertia in cm(-1) A = 0.012423 B = 0.009322 C = 0.005770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.328717 B = 3003.022624 C = 4851.759751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C -0.049 4.049 3 N -0.229 5.229 4 N -0.375 5.375 5 C 0.321 3.679 6 N -0.543 5.543 7 C 0.245 3.755 8 C -0.545 4.545 9 H 0.065 0.935 10 C 0.069 3.931 11 N -0.888 5.888 12 Si 0.899 3.101 13 H -0.271 1.271 14 H -0.280 1.280 15 H -0.281 1.281 16 C 0.137 3.863 17 C -0.047 4.047 18 C 0.221 3.779 19 N -0.446 5.446 20 S 0.054 5.946 21 H 0.076 0.924 22 H 0.075 0.925 23 H 0.082 0.918 24 H 0.041 0.959 25 H 0.051 0.949 26 H 0.267 0.733 27 H 0.096 0.904 28 H 0.087 0.913 29 H 0.110 0.890 30 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.937 3.848 -3.087 8.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.335 4.335 3 N -0.065 5.065 4 N -0.225 5.225 5 C -0.050 4.050 6 N -0.257 5.257 7 C 0.127 3.873 8 C -0.584 4.584 9 H 0.083 0.917 10 C -0.135 4.135 11 N -0.526 5.526 12 Si 0.726 3.274 13 H -0.196 1.196 14 H -0.206 1.206 15 H -0.207 1.207 16 C 0.009 3.991 17 C -0.088 4.088 18 C -0.097 4.097 19 N -0.124 5.124 20 S 0.292 5.708 21 H 0.095 0.905 22 H 0.094 0.906 23 H 0.101 0.899 24 H 0.059 0.941 25 H 0.069 0.931 26 H 0.077 0.923 27 H 0.114 0.886 28 H 0.105 0.895 29 H 0.128 0.872 30 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -5.380 5.005 -3.140 7.991 hybrid contribution -0.102 -0.952 0.943 1.343 sum -5.483 4.054 -2.197 7.164 Atomic orbital electron populations 1.20090 0.85112 1.03463 1.03009 1.29031 1.01844 0.90025 1.12552 1.70565 0.96930 1.27366 1.11595 1.71391 1.05353 1.15228 1.30495 1.26731 0.91977 0.90890 0.95440 1.46744 0.97824 1.08798 1.72324 1.19737 0.97870 0.71289 0.98432 1.21464 1.49760 0.95308 0.91830 0.91684 1.24913 0.94415 0.96353 0.97805 1.69908 1.46540 1.05200 1.30928 0.86413 0.77940 0.78986 0.84062 1.19554 1.20605 1.20696 1.21300 0.91311 0.92870 0.93594 1.19799 0.93143 0.94572 1.01334 1.28973 0.93846 0.93779 0.93093 1.81163 1.11409 1.11162 1.08623 1.86141 0.99035 1.10410 1.75257 0.90490 0.90627 0.89919 0.94145 0.93084 0.92279 0.88551 0.89499 0.87228 0.86892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.61 10.51 36.00 0.38 -0.23 16 2 C -0.05 -0.78 7.79 -13.34 -0.10 -0.88 16 3 N -0.23 -4.22 11.55 33.57 0.39 -3.83 16 4 N -0.37 -7.18 10.94 31.00 0.34 -6.84 16 5 C 0.32 6.04 8.04 -87.14 -0.70 5.34 16 6 N -0.54 -9.93 2.56 -175.45 -0.45 -10.38 16 7 C 0.25 5.21 5.19 -5.19 -0.03 5.19 16 8 C -0.54 -13.22 9.39 -34.44 -0.32 -13.54 16 9 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 10 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 11 N -0.89 -23.10 13.29 55.43 0.74 -22.37 16 12 Si 0.90 19.77 29.54 -169.99 -5.02 14.75 16 13 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 14 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 15 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 16 C 0.14 2.07 5.51 -4.04 -0.02 2.04 16 17 C -0.05 -0.57 6.03 -29.51 -0.18 -0.75 16 18 C 0.22 3.07 15.43 -20.78 -0.32 2.75 16 19 N -0.45 -7.26 18.53 42.13 0.78 -6.48 16 20 S 0.05 0.95 22.24 -107.50 -2.39 -1.45 16 21 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 23 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 24 H 0.04 0.92 7.16 -51.93 -0.37 0.54 16 25 H 0.05 1.09 8.07 -51.93 -0.42 0.67 16 26 H 0.27 6.63 8.31 -40.82 -0.34 6.30 16 27 H 0.10 1.44 8.07 -51.93 -0.42 1.02 16 28 H 0.09 1.34 7.67 -51.93 -0.40 0.94 16 29 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 291.13 15.07 4.39 4.39 Total: -1.00 -28.45 291.13 -5.89 -34.35 By element: Atomic # 1 Polarization: -0.42 SS G_CDS: -3.27 Total: -3.69 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -1.39 Total: 1.55 kcal Atomic # 7 Polarization: -51.69 SS G_CDS: 1.79 Total: -49.90 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Atomic # 16 Polarization: 0.95 SS G_CDS: -2.39 Total: -1.45 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -28.45 -5.89 -34.35 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003077021.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.049 kcal (2) G-P(sol) polarization free energy of solvation -28.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds