Wall clock time and date at job start Sun Mar 29 2020 22:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.29317 * 126.06725 * 2 1 4 4 N 1.26096 * 117.97295 * 179.97438 * 3 2 1 5 5 C 1.30243 * 117.62046 * 0.02562 * 4 3 2 6 6 N 1.38702 * 126.16771 * 179.97438 * 5 4 3 7 7 C 1.46501 * 120.00005 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.47165 * 270.00667 * 7 6 5 9 9 H 1.07996 * 120.00008 * 359.97438 * 8 7 6 10 10 C 1.37874 * 119.99888 * 180.02562 * 8 7 6 11 11 N 1.31515 * 120.00127 * 359.97438 * 10 8 7 12 12 Si 1.86807 * 120.00055 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.46876 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47055 * 119.99710 * 12 10 8 15 15 H 1.48497 * 109.46973 * 239.99924 * 12 10 8 16 16 C 1.46496 * 120.00286 * 0.03062 * 6 5 4 17 17 C 1.53002 * 109.47037 * 269.99897 * 16 6 5 18 18 C 1.47206 * 109.47021 * 179.97438 * 17 16 6 19 19 N 7.63453 * 158.55991 * 328.90420 * 2 1 3 20 20 S 1.76490 * 126.06542 * 180.26762 * 2 1 3 21 21 H 1.08994 * 109.47435 * 90.02094 * 1 2 3 22 22 H 1.09005 * 109.47026 * 210.02209 * 1 2 3 23 23 H 1.08999 * 109.46972 * 330.01821 * 1 2 3 24 24 H 1.08997 * 109.47130 * 30.00380 * 7 6 5 25 25 H 1.08998 * 109.47021 * 150.00434 * 7 6 5 26 26 H 0.96997 * 120.00272 * 179.97438 * 11 10 8 27 27 H 1.08996 * 109.47565 * 149.99328 * 16 6 5 28 28 H 1.09004 * 109.47374 * 29.99523 * 16 6 5 29 29 H 1.08996 * 109.47407 * 59.99335 * 17 16 6 30 30 H 1.09000 * 109.46986 * 299.99564 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2683 1.0453 0.0000 4 7 3.5167 0.8678 0.0005 5 6 3.9520 -0.3598 0.0005 6 7 5.2809 -0.7570 0.0005 7 6 5.6194 -2.1824 -0.0002 8 6 5.7351 -2.6718 1.4205 9 1 5.5732 -1.9893 2.2416 10 6 6.0488 -3.9907 1.6718 11 7 6.2465 -4.8217 0.6718 12 14 6.1929 -4.5973 3.4328 13 1 5.9263 -3.4739 4.3666 14 1 5.2042 -5.6805 3.6657 15 1 7.5634 -5.1194 3.6658 16 6 6.3461 0.2487 0.0012 17 6 6.7172 0.5996 -1.4411 18 6 7.7871 1.6107 -1.4404 19 7 8.6132 2.3896 -1.4413 20 16 2.5459 -1.4266 -0.0067 21 1 -0.3634 -0.0004 -1.0276 22 1 -0.3633 -0.8898 0.5142 23 1 -0.3633 0.8901 0.5135 24 1 4.8376 -2.7412 -0.5144 25 1 6.5693 -2.3300 -0.5139 26 1 6.4675 -5.7494 0.8486 27 1 7.2212 -0.1491 0.5150 28 1 5.9992 1.1451 0.5154 29 1 5.8421 0.9974 -1.9549 30 1 7.0641 -0.2967 -1.9553 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003077021.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:56:48 Heat of formation + Delta-G solvation = 68.967270 kcal Electronic energy + Delta-G solvation = -15678.072152 eV Core-core repulsion = 13020.994832 eV Total energy + Delta-G solvation = -2657.077320 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 252.074 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.61077 -38.86361 -37.48316 -34.91751 -33.45938 -32.42667 -30.00111 -28.06859 -26.05538 -25.30274 -23.32951 -20.19985 -19.78996 -18.88677 -18.33448 -17.64239 -16.65854 -16.50888 -16.03894 -15.41168 -15.11003 -14.77604 -14.40783 -14.00584 -13.83077 -13.77044 -13.53645 -13.40383 -13.20840 -13.10007 -12.79188 -12.66121 -12.22438 -11.91915 -11.87739 -11.15987 -11.10628 -10.81008 -10.61557 -10.27959 -8.74302 -8.18028 -6.37161 -0.07545 0.03027 0.66478 1.39835 1.44680 1.52857 1.62847 1.77285 1.90694 2.04499 2.40768 3.05822 3.10067 3.63212 3.98531 4.04093 4.07511 4.49248 4.50164 4.71789 4.81739 4.92964 4.96928 4.98795 5.13505 5.26115 5.62300 5.93912 5.99351 6.17637 6.53392 6.73456 7.34042 7.98351 8.82007 Molecular weight = 252.07amu Principal moments of inertia in cm(-1) A = 0.012423 B = 0.009322 C = 0.005770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.328717 B = 3003.022624 C = 4851.759751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C -0.020 4.020 3 N -0.261 5.261 4 N -0.385 5.385 5 C 0.307 3.693 6 N -0.547 5.547 7 C 0.261 3.739 8 C -0.549 4.549 9 H 0.052 0.948 10 C 0.029 3.971 11 N -0.915 5.915 12 Si 0.950 3.050 13 H -0.274 1.274 14 H -0.278 1.278 15 H -0.278 1.278 16 C 0.136 3.864 17 C -0.031 4.031 18 C 0.246 3.754 19 N -0.486 5.486 20 S 0.033 5.967 21 H 0.101 0.899 22 H 0.094 0.906 23 H 0.097 0.903 24 H 0.027 0.973 25 H 0.051 0.949 26 H 0.269 0.731 27 H 0.096 0.904 28 H 0.083 0.917 29 H 0.119 0.881 30 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.117 3.902 -3.052 9.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.306 4.306 3 N -0.095 5.095 4 N -0.234 5.234 5 C -0.065 4.065 6 N -0.262 5.262 7 C 0.141 3.859 8 C -0.588 4.588 9 H 0.070 0.930 10 C -0.173 4.173 11 N -0.553 5.553 12 Si 0.776 3.224 13 H -0.198 1.198 14 H -0.204 1.204 15 H -0.203 1.203 16 C 0.010 3.990 17 C -0.072 4.072 18 C -0.071 4.071 19 N -0.164 5.164 20 S 0.271 5.729 21 H 0.119 0.881 22 H 0.113 0.887 23 H 0.116 0.884 24 H 0.045 0.955 25 H 0.069 0.931 26 H 0.078 0.922 27 H 0.114 0.886 28 H 0.101 0.899 29 H 0.137 0.863 30 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.565 5.097 -3.105 8.872 hybrid contribution 0.120 -0.941 0.940 1.335 sum -6.445 4.156 -2.165 7.969 Atomic orbital electron populations 1.20408 0.81444 1.05094 1.05064 1.29877 1.03573 0.88379 1.08802 1.70550 0.96900 1.28126 1.13884 1.71328 1.06053 1.15430 1.30574 1.26821 0.92242 0.91113 0.96317 1.46531 0.98344 1.08133 1.73157 1.19346 0.97224 0.72796 0.96561 1.21668 1.48972 0.95176 0.92973 0.92960 1.25519 0.94455 0.96687 1.00605 1.69973 1.47621 1.05457 1.32288 0.85623 0.77924 0.78290 0.80574 1.19835 1.20375 1.20336 1.21364 0.90446 0.91926 0.95296 1.19713 0.92945 0.94850 0.99740 1.29074 0.93182 0.93037 0.91837 1.81191 1.12800 1.12529 1.09899 1.86195 0.99518 1.11751 1.75434 0.88064 0.88716 0.88439 0.95513 0.93114 0.92172 0.88608 0.89904 0.86313 0.85051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.10 10.51 71.23 0.75 -0.35 16 2 C -0.02 -0.59 7.79 88.48 0.69 0.09 16 3 N -0.26 -9.23 11.55 -47.71 -0.55 -9.78 16 4 N -0.38 -14.43 10.94 -55.84 -0.61 -15.05 16 5 C 0.31 11.37 8.04 179.13 1.44 12.81 16 6 N -0.55 -19.75 2.56 -709.01 -1.82 -21.57 16 7 C 0.26 11.04 5.19 85.63 0.44 11.48 16 8 C -0.55 -26.56 9.39 25.60 0.24 -26.32 16 9 H 0.05 2.62 7.81 -2.91 -0.02 2.60 16 10 C 0.03 1.42 5.46 84.65 0.46 1.88 16 11 N -0.91 -47.37 13.29 21.45 0.28 -47.08 16 12 Si 0.95 40.20 29.54 68.60 2.03 42.22 16 13 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 14 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 15 H -0.28 -11.53 7.11 99.48 0.71 -10.83 16 16 C 0.14 4.02 5.51 86.38 0.48 4.50 16 17 C -0.03 -0.72 6.03 28.79 0.17 -0.54 16 18 C 0.25 6.57 15.43 89.45 1.38 7.95 16 19 N -0.49 -15.53 18.53 20.00 0.37 -15.16 16 20 S 0.03 1.14 22.24 -56.49 -1.26 -0.12 16 21 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 22 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 23 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 24 H 0.03 1.22 7.16 -2.39 -0.02 1.20 16 25 H 0.05 2.15 8.07 -2.39 -0.02 2.13 16 26 H 0.27 13.27 8.31 -92.71 -0.77 12.50 16 27 H 0.10 2.81 8.07 -2.39 -0.02 2.80 16 28 H 0.08 2.51 7.67 -2.39 -0.02 2.50 16 29 H 0.12 2.65 8.14 -2.39 -0.02 2.63 16 30 H 0.13 2.65 8.14 -2.39 -0.02 2.64 16 Total: -1.00 -59.82 291.13 5.66 -54.17 By element: Atomic # 1 Polarization: -0.29 SS G_CDS: 1.16 Total: 0.87 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: 6.05 Total: 11.50 kcal Atomic # 7 Polarization: -106.32 SS G_CDS: -2.32 Total: -108.64 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 2.03 Total: 42.22 kcal Atomic # 16 Polarization: 1.14 SS G_CDS: -1.26 Total: -0.12 kcal Total: -59.82 5.66 -54.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003077021.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.133 kcal (2) G-P(sol) polarization free energy of solvation -59.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds