Wall clock time and date at job start Sun Mar 29 2020 23:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31178 * 1 3 3 Si 1.86796 * 120.00195 * 2 1 4 4 H 1.48491 * 109.47150 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47159 * 299.99656 * 3 2 1 6 6 H 1.48501 * 109.47245 * 59.99503 * 3 2 1 7 7 C 1.39238 * 119.99277 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99679 * 199.58063 * 7 2 1 9 9 N 1.37014 * 120.00397 * 19.59009 * 7 2 1 10 10 C 1.35044 * 125.57510 * 31.38839 * 9 7 2 11 11 O 1.21403 * 127.25173 * 359.97438 * 10 9 7 12 12 C 1.49577 * 105.49767 * 179.97438 * 10 9 7 13 13 O 1.21343 * 127.24497 * 180.02562 * 12 10 9 14 14 N 1.35048 * 105.49858 * 0.02562 * 12 10 9 15 15 C 1.46503 * 125.57677 * 179.97438 * 14 12 10 16 16 C 1.53877 * 110.02987 * 60.01944 * 15 14 12 17 17 C 1.54259 * 106.59863 * 240.71464 * 16 15 14 18 18 C 1.54889 * 104.31520 * 336.33016 * 17 16 15 19 19 C 1.54269 * 110.02932 * 302.85788 * 15 14 12 20 20 C 1.34286 * 125.57198 * 211.60870 * 9 7 2 21 21 O 1.21435 * 124.35533 * 0.06451 * 20 9 7 22 22 H 0.96997 * 119.99738 * 0.02562 * 1 2 3 23 23 H 1.08992 * 110.05638 * 181.43570 * 15 14 12 24 24 H 1.09007 * 110.02887 * 121.43359 * 16 15 14 25 25 H 1.08996 * 110.03752 * 0.02562 * 16 15 14 26 26 H 1.09001 * 110.48668 * 95.07178 * 17 16 15 27 27 H 1.09002 * 110.48825 * 217.58136 * 17 16 15 28 28 H 1.08997 * 110.75798 * 156.32647 * 18 17 16 29 29 H 1.09009 * 110.75305 * 279.69037 * 18 17 16 30 30 H 1.08999 * 110.48014 * 261.57136 * 19 15 14 31 31 H 1.08998 * 110.48816 * 24.08175 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3118 0.0000 0.0000 3 14 2.2458 1.6177 0.0000 4 1 3.7057 1.3463 0.0006 5 1 1.8872 2.3964 -1.2126 6 1 1.8870 2.3965 1.2124 7 6 2.0078 -1.2059 0.0005 8 1 3.0410 -1.2329 0.3140 9 7 1.3822 -2.3583 -0.3968 10 6 0.4011 -2.4411 -1.3210 11 8 -0.0928 -1.5292 -1.9522 12 6 0.0509 -3.8930 -1.4033 13 8 -0.7862 -4.4073 -2.1153 14 7 0.8627 -4.5107 -0.5183 15 6 0.8867 -5.9496 -0.2439 16 6 1.2289 -6.7254 -1.5280 17 6 0.0264 -7.6465 -1.8200 18 6 -0.6572 -7.8321 -0.4426 19 6 -0.5119 -6.4263 0.1994 20 6 1.6415 -3.5896 0.0723 21 8 2.4743 -3.8386 0.9203 22 1 -0.4849 0.8400 -0.0004 23 1 1.6197 -6.1700 0.5320 24 1 2.1280 -7.3223 -1.3751 25 1 1.3776 -6.0314 -2.3552 26 1 -0.6566 -7.1706 -2.5238 27 1 0.3666 -8.6060 -2.2095 28 1 -1.7074 -8.0970 -0.5651 29 1 -0.1348 -8.5834 0.1498 30 1 -0.5644 -6.4961 1.2859 31 1 -1.2816 -5.7520 -0.1762 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003543789.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:08 Heat of formation + Delta-G solvation = -81.971201 kcal Electronic energy + Delta-G solvation = -19212.699594 eV Core-core repulsion = 16074.031468 eV Total energy + Delta-G solvation = -3138.668126 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.094 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -44.10905 -40.15028 -39.80522 -38.32253 -37.09411 -35.88851 -33.94726 -29.92858 -29.71939 -27.40055 -26.43466 -23.28456 -23.18773 -21.65044 -21.04216 -19.81818 -18.38358 -18.27525 -17.88020 -17.16083 -16.79759 -16.45777 -16.05564 -15.76833 -15.46751 -15.26777 -14.96232 -14.25097 -13.80788 -13.52250 -13.19842 -13.09539 -12.90990 -12.83318 -12.14845 -12.08595 -11.98696 -11.86842 -11.84310 -11.52234 -11.46366 -10.85141 -10.75832 -10.23628 -8.63764 -6.49575 -0.50319 1.10885 1.36359 1.44504 1.58015 1.65633 1.75346 2.09502 2.35222 2.93286 3.34513 3.48811 3.57421 3.80476 4.18926 4.20876 4.44498 4.48003 4.51549 4.74786 4.77719 4.89896 5.01889 5.16826 5.20132 5.21749 5.30392 5.47340 5.66632 5.76724 5.90684 6.42669 6.65038 6.88050 7.36962 8.46482 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.042250 B = 0.007009 C = 0.006469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.569263 B = 3994.037772 C = 4327.268675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.010 3.990 3 Si 1.008 2.992 4 H -0.249 1.249 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.378 4.378 8 H 0.116 0.884 9 N -0.411 5.411 10 C 0.444 3.556 11 O -0.451 6.451 12 C 0.521 3.479 13 O -0.446 6.446 14 N -0.567 5.567 15 C 0.132 3.868 16 C -0.131 4.131 17 C -0.118 4.118 18 C -0.107 4.107 19 C -0.138 4.138 20 C 0.684 3.316 21 O -0.533 6.533 22 H 0.282 0.718 23 H 0.121 0.879 24 H 0.103 0.897 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.094 0.906 28 H 0.079 0.921 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.293 -12.419 -0.355 12.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.200 4.200 3 Si 0.828 3.172 4 H -0.172 1.172 5 H -0.201 1.201 6 H -0.191 1.191 7 C -0.503 4.503 8 H 0.133 0.867 9 N -0.144 5.144 10 C 0.228 3.772 11 O -0.321 6.321 12 C 0.303 3.697 13 O -0.314 6.314 14 N -0.316 5.316 15 C 0.032 3.968 16 C -0.170 4.170 17 C -0.156 4.156 18 C -0.145 4.145 19 C -0.176 4.176 20 C 0.390 3.610 21 O -0.407 6.407 22 H 0.092 0.908 23 H 0.138 0.862 24 H 0.121 0.879 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.113 0.887 28 H 0.098 0.902 29 H 0.115 0.885 30 H 0.105 0.895 31 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.864 -12.262 -0.607 12.307 hybrid contribution 0.017 1.136 0.070 1.138 sum 0.881 -11.126 -0.537 11.174 Atomic orbital electron populations 1.69919 1.08496 1.30354 1.40027 1.26586 0.96044 1.03935 0.93411 0.84685 0.79073 0.75130 0.78267 1.17187 1.20121 1.19075 1.19872 0.97161 0.82500 1.50776 0.86688 1.42243 1.33401 1.07075 1.31718 1.20819 0.84339 0.89674 0.82408 1.90615 1.53595 1.44268 1.43625 1.21010 0.80452 0.88848 0.79347 1.90677 1.29621 1.73125 1.37983 1.47027 1.35609 1.10342 1.38658 1.22488 1.00790 0.73256 1.00226 1.22548 1.01016 0.98498 0.94898 1.22323 0.95897 0.99587 0.97799 1.22483 1.01872 0.94589 0.95529 1.22844 0.94148 0.98761 1.01885 1.16668 0.81878 0.81524 0.80933 1.90784 1.35290 1.82347 1.32327 0.90836 0.86152 0.87851 0.93252 0.92905 0.88719 0.90189 0.88549 0.89542 0.93031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -48.51 11.13 21.70 0.24 -48.27 16 2 C 0.01 0.50 4.91 85.03 0.42 0.92 16 3 Si 1.01 40.99 29.60 68.60 2.03 43.02 16 4 H -0.25 -9.44 7.11 99.48 0.71 -8.74 16 5 H -0.28 -11.20 7.11 99.48 0.71 -10.49 16 6 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 7 C -0.38 -20.48 9.65 84.12 0.81 -19.67 16 8 H 0.12 5.99 7.91 -2.91 -0.02 5.97 16 9 N -0.41 -21.54 2.73 -600.08 -1.64 -23.17 16 10 C 0.44 23.27 7.57 87.27 0.66 23.94 16 11 O -0.45 -26.25 15.47 -3.41 -0.05 -26.31 16 12 C 0.52 22.93 7.05 87.26 0.62 23.54 16 13 O -0.45 -19.38 16.69 -3.22 -0.05 -19.43 16 14 N -0.57 -22.33 2.53 -748.32 -1.89 -24.23 16 15 C 0.13 3.86 3.52 45.72 0.16 4.02 16 16 C -0.13 -3.19 6.20 31.32 0.19 -3.00 16 17 C -0.12 -2.42 6.82 31.67 0.22 -2.20 16 18 C -0.11 -1.97 6.93 32.00 0.22 -1.75 16 19 C -0.14 -3.55 6.37 31.79 0.20 -3.35 16 20 C 0.68 31.82 8.27 179.36 1.48 33.31 16 21 O -0.53 -25.72 17.12 -3.51 -0.06 -25.78 16 22 H 0.28 14.91 8.30 -92.71 -0.77 14.14 16 23 H 0.12 3.29 7.64 -2.39 -0.02 3.27 16 24 H 0.10 1.95 8.14 -2.38 -0.02 1.93 16 25 H 0.05 1.43 7.50 -2.39 -0.02 1.41 16 26 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 30 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.05 1.62 6.60 -2.39 -0.02 1.61 16 Total: -1.00 -66.31 270.70 4.72 -61.59 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: 1.16 Total: 6.81 kcal Atomic # 6 Polarization: 50.77 SS G_CDS: 4.98 Total: 55.75 kcal Atomic # 7 Polarization: -92.38 SS G_CDS: -3.29 Total: -95.66 kcal Atomic # 8 Polarization: -71.35 SS G_CDS: -0.17 Total: -71.51 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 2.03 Total: 43.02 kcal Total: -66.31 4.72 -61.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003543789.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.377 kcal (2) G-P(sol) polarization free energy of solvation -66.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds