Wall clock time and date at job start Sun Mar 29 2020 23:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00266 * 2 1 4 4 H 1.48501 * 109.47040 * 269.99881 * 3 2 1 5 5 H 1.48499 * 109.46995 * 29.99920 * 3 2 1 6 6 H 1.48503 * 109.46979 * 150.00101 * 3 2 1 7 7 C 1.37881 * 119.99855 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99778 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99761 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.46748 * 179.97438 * 9 7 2 11 11 C 1.38058 * 126.34607 * 89.99869 * 10 9 7 12 12 C 1.38832 * 134.14420 * 359.94256 * 11 10 9 13 13 C 1.37851 * 119.68776 * 180.02562 * 12 11 10 14 14 C 1.38776 * 120.45485 * 359.97438 * 13 12 11 15 15 C 1.36605 * 120.66622 * 0.03810 * 14 13 12 16 16 C 1.39734 * 119.88806 * 359.97438 * 15 14 13 17 17 N 1.35787 * 133.60143 * 180.02562 * 16 15 14 18 18 C 1.30106 * 109.64359 * 179.97438 * 17 16 15 19 19 C 1.50700 * 124.94917 * 180.02562 * 18 17 16 20 20 F 1.39899 * 109.47245 * 119.97296 * 19 18 17 21 21 F 1.39905 * 109.47054 * 239.97695 * 19 18 17 22 22 H 0.96997 * 119.99635 * 0.02562 * 1 2 3 23 23 H 1.08993 * 109.47232 * 60.00468 * 9 7 2 24 24 H 1.08996 * 109.47183 * 299.99700 * 9 7 2 25 25 H 1.08000 * 120.15436 * 0.04931 * 12 11 10 26 26 H 1.08002 * 119.77142 * 179.97438 * 13 12 11 27 27 H 1.08001 * 119.67035 * 180.02562 * 14 13 12 28 28 H 1.08009 * 120.05490 * 179.70923 * 15 14 13 29 29 H 1.08994 * 109.47215 * 359.97060 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 7 2.2029 -3.6127 -0.0027 11 6 2.7346 -4.2356 1.1087 12 6 2.5864 -4.0618 2.4781 13 6 3.2807 -4.8745 3.3486 14 6 4.1252 -5.8639 2.8652 15 6 4.2837 -6.0492 1.5211 16 6 3.5902 -5.2372 0.6198 17 7 3.5371 -5.1756 -0.7357 18 6 2.7255 -4.2258 -1.0989 19 6 2.4103 -3.8583 -2.5260 20 9 1.0388 -4.0121 -2.7552 21 9 2.7753 -2.5275 -2.7563 22 1 -0.4849 0.8401 -0.0004 23 1 0.6247 -2.5563 -0.8919 24 1 0.6239 -2.5575 0.8880 25 1 1.9298 -3.2938 2.8596 26 1 3.1667 -4.7402 4.4142 27 1 4.6628 -6.4937 3.5586 28 1 4.9471 -6.8192 1.1556 29 1 2.9666 -4.5094 -3.2002 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000016904043.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:07 Heat of formation + Delta-G solvation = -34.424530 kcal Electronic energy + Delta-G solvation = -18325.288092 eV Core-core repulsion = 15077.594229 eV Total energy + Delta-G solvation = -3247.693863 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 252.077 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.63424 -46.62224 -41.61338 -36.98098 -34.26938 -32.43451 -30.11584 -29.85535 -27.34761 -26.36308 -23.47198 -21.77130 -21.71198 -19.79255 -17.52462 -17.07204 -16.83967 -16.60155 -16.27942 -15.94104 -14.66503 -14.52692 -14.30709 -13.58207 -13.46090 -13.40079 -12.97225 -12.57439 -12.40102 -12.01840 -11.66532 -11.56188 -11.26669 -11.08293 -10.99625 -10.80408 -10.37272 -10.25791 -9.62527 -9.41486 -8.70792 -7.97630 -7.62600 -6.33159 -4.41673 1.26208 1.96886 3.02716 3.18724 3.21597 3.24933 3.30926 3.75844 4.22817 4.26492 4.33779 4.85555 5.01558 5.09271 5.28803 5.31100 5.38556 5.72450 5.80530 5.85768 6.05009 6.32277 6.67832 6.82261 6.84844 6.90882 7.16672 7.26568 7.54325 7.72662 7.75171 8.20700 8.62730 9.25825 10.74926 Molecular weight = 252.08amu Principal moments of inertia in cm(-1) A = 0.018819 B = 0.009200 C = 0.006985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.526698 B = 3042.716806 C = 4007.396973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.070 3.930 3 Si 0.907 3.093 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.538 4.538 8 H 0.065 0.935 9 C 0.230 3.770 10 N -0.431 5.431 11 C 0.063 3.937 12 C -0.091 4.091 13 C -0.114 4.114 14 C -0.135 4.135 15 C -0.068 4.068 16 C 0.036 3.964 17 N -0.485 5.485 18 C 0.200 3.800 19 C 0.362 3.638 20 F -0.191 7.191 21 F -0.175 7.175 22 H 0.269 0.731 23 H 0.057 0.943 24 H 0.051 0.949 25 H 0.127 0.873 26 H 0.125 0.875 27 H 0.123 0.877 28 H 0.123 0.877 29 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.700 -8.502 1.134 9.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.134 4.134 3 Si 0.733 3.267 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.576 4.576 8 H 0.083 0.917 9 C 0.113 3.887 10 N -0.114 5.114 11 C -0.051 4.051 12 C -0.112 4.112 13 C -0.135 4.135 14 C -0.156 4.156 15 C -0.088 4.088 16 C -0.085 4.085 17 N -0.207 5.207 18 C -0.067 4.067 19 C 0.306 3.694 20 F -0.172 7.172 21 F -0.156 7.156 22 H 0.079 0.921 23 H 0.075 0.925 24 H 0.069 0.931 25 H 0.144 0.856 26 H 0.143 0.857 27 H 0.141 0.859 28 H 0.141 0.859 29 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.801 -8.702 0.548 9.954 hybrid contribution -0.215 1.682 0.515 1.772 sum 4.586 -7.020 1.064 8.453 Atomic orbital electron populations 1.69918 1.06082 1.27834 1.48736 1.24904 0.94947 0.99506 0.94089 0.86342 0.79706 0.82040 0.78584 1.20092 1.20824 1.19628 1.21186 0.93603 0.89292 1.53557 0.91673 1.19974 0.86825 0.81506 1.00442 1.45977 1.34852 1.27268 1.03297 1.19004 0.99374 0.96697 0.90000 1.20121 1.01364 1.00550 0.89119 1.20803 0.97650 0.96053 0.98954 1.20520 1.00761 0.99691 0.94619 1.19857 0.98947 0.98451 0.91520 1.19005 1.01017 0.98790 0.89705 1.70128 1.19568 1.19300 1.11673 1.23631 0.97413 0.94381 0.91288 1.19467 0.78446 0.81853 0.89597 1.93031 1.33556 1.95589 1.95069 1.93131 1.91061 1.36544 1.94880 0.92136 0.92508 0.93088 0.85554 0.85717 0.85910 0.85920 0.84307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.81 13.29 55.43 0.74 -24.07 15 2 C 0.07 1.88 5.46 -17.82 -0.10 1.78 15 3 Si 0.91 21.05 29.54 -169.99 -5.02 16.02 15 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 15 5 H -0.28 -6.42 7.11 56.52 0.40 -6.01 15 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 15 7 C -0.54 -14.55 9.32 -34.44 -0.32 -14.87 15 8 H 0.07 1.82 7.81 -52.49 -0.41 1.41 15 9 C 0.23 5.78 5.62 -5.19 -0.03 5.75 15 10 N -0.43 -9.81 2.79 -112.44 -0.31 -10.12 15 11 C 0.06 1.33 6.88 -83.98 -0.58 0.75 15 12 C -0.09 -1.67 10.05 -39.50 -0.40 -2.07 15 13 C -0.11 -1.69 10.03 -39.52 -0.40 -2.09 15 14 C -0.14 -1.89 9.96 -39.97 -0.40 -2.29 15 15 C -0.07 -1.09 10.05 -39.61 -0.40 -1.49 15 16 C 0.04 0.72 7.23 -84.70 -0.61 0.11 15 17 N -0.48 -9.89 11.27 -8.24 -0.09 -9.99 15 18 C 0.20 4.18 7.29 -154.83 -1.13 3.05 15 19 C 0.36 6.50 5.33 36.01 0.19 6.69 15 20 F -0.19 -3.59 16.32 2.25 0.04 -3.56 15 21 F -0.18 -3.58 17.18 2.25 0.04 -3.54 15 22 H 0.27 7.09 8.31 -40.82 -0.34 6.75 15 23 H 0.06 1.49 6.89 -51.93 -0.36 1.13 15 24 H 0.05 1.32 8.14 -51.93 -0.42 0.89 15 25 H 0.13 2.29 8.06 -52.49 -0.42 1.87 15 26 H 0.12 1.45 8.06 -52.49 -0.42 1.02 15 27 H 0.12 1.28 8.06 -52.49 -0.42 0.86 15 28 H 0.12 1.67 8.06 -52.48 -0.42 1.25 15 29 H 0.14 1.83 8.14 -51.93 -0.42 1.40 15 LS Contribution 270.45 15.07 4.08 4.08 Total: -1.00 -29.97 270.45 -7.14 -37.12 By element: Atomic # 1 Polarization: 1.19 SS G_CDS: -2.44 Total: -1.25 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: -4.16 Total: -4.68 kcal Atomic # 7 Polarization: -44.51 SS G_CDS: 0.33 Total: -44.18 kcal Atomic # 9 Polarization: -7.18 SS G_CDS: 0.08 Total: -7.10 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -29.97 -7.14 -37.12 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016904043.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.692 kcal (2) G-P(sol) polarization free energy of solvation -29.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds