Wall clock time and date at job start Sun Mar 29 2020 23:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00266 * 2 1 4 4 H 1.48501 * 109.47040 * 269.99881 * 3 2 1 5 5 H 1.48499 * 109.46995 * 29.99920 * 3 2 1 6 6 H 1.48503 * 109.46979 * 150.00101 * 3 2 1 7 7 C 1.37881 * 119.99855 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99778 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99761 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.46748 * 179.97438 * 9 7 2 11 11 C 1.38058 * 126.34607 * 89.99869 * 10 9 7 12 12 C 1.38832 * 134.14420 * 359.94256 * 11 10 9 13 13 C 1.37851 * 119.68776 * 180.02562 * 12 11 10 14 14 C 1.38776 * 120.45485 * 359.97438 * 13 12 11 15 15 C 1.36605 * 120.66622 * 0.03810 * 14 13 12 16 16 C 1.39734 * 119.88806 * 359.97438 * 15 14 13 17 17 N 1.35787 * 133.60143 * 180.02562 * 16 15 14 18 18 C 1.30106 * 109.64359 * 179.97438 * 17 16 15 19 19 C 1.50700 * 124.94917 * 180.02562 * 18 17 16 20 20 F 1.39899 * 109.47245 * 119.97296 * 19 18 17 21 21 F 1.39905 * 109.47054 * 239.97695 * 19 18 17 22 22 H 0.96997 * 119.99635 * 0.02562 * 1 2 3 23 23 H 1.08993 * 109.47232 * 60.00468 * 9 7 2 24 24 H 1.08996 * 109.47183 * 299.99700 * 9 7 2 25 25 H 1.08000 * 120.15436 * 0.04931 * 12 11 10 26 26 H 1.08002 * 119.77142 * 179.97438 * 13 12 11 27 27 H 1.08001 * 119.67035 * 180.02562 * 14 13 12 28 28 H 1.08009 * 120.05490 * 179.70923 * 15 14 13 29 29 H 1.08994 * 109.47215 * 359.97060 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 7 2.2029 -3.6127 -0.0027 11 6 2.7346 -4.2356 1.1087 12 6 2.5864 -4.0618 2.4781 13 6 3.2807 -4.8745 3.3486 14 6 4.1252 -5.8639 2.8652 15 6 4.2837 -6.0492 1.5211 16 6 3.5902 -5.2372 0.6198 17 7 3.5371 -5.1756 -0.7357 18 6 2.7255 -4.2258 -1.0989 19 6 2.4103 -3.8583 -2.5260 20 9 1.0388 -4.0121 -2.7552 21 9 2.7753 -2.5275 -2.7563 22 1 -0.4849 0.8401 -0.0004 23 1 0.6247 -2.5563 -0.8919 24 1 0.6239 -2.5575 0.8880 25 1 1.9298 -3.2938 2.8596 26 1 3.1667 -4.7402 4.4142 27 1 4.6628 -6.4937 3.5586 28 1 4.9471 -6.8192 1.1556 29 1 2.9666 -4.5094 -3.2002 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000016904043.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:07 Heat of formation + Delta-G solvation = -51.278259 kcal Electronic energy + Delta-G solvation = -18326.018924 eV Core-core repulsion = 15077.594229 eV Total energy + Delta-G solvation = -3248.424695 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 252.077 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.12404 -48.13419 -43.11204 -38.31975 -36.09524 -34.30161 -31.55124 -31.25590 -29.22466 -27.75737 -25.40863 -23.17747 -23.11786 -21.34399 -18.98914 -18.92188 -18.40364 -18.26571 -17.75772 -17.36361 -16.51479 -16.16790 -15.62018 -14.99705 -14.95811 -14.91484 -14.50160 -14.47353 -13.92607 -13.87388 -13.27716 -12.90253 -12.80652 -12.72043 -12.59367 -12.37793 -12.19370 -12.07313 -11.17937 -11.15749 -10.78223 -9.39594 -9.07717 -8.39502 -6.57032 -0.12025 0.62554 1.33643 1.34991 1.44762 1.54421 1.70156 2.24955 2.32299 2.90945 2.91814 2.99669 3.37110 3.77309 3.85550 4.03273 4.15882 4.23127 4.43493 4.49832 4.74951 4.80586 4.90442 5.28835 5.45685 5.51191 5.57395 5.65370 5.69663 5.95797 6.02947 6.51062 6.67486 7.14344 8.67758 Molecular weight = 252.08amu Principal moments of inertia in cm(-1) A = 0.018819 B = 0.009200 C = 0.006985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.526698 B = 3042.716806 C = 4007.396973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.025 3.975 3 Si 0.969 3.031 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.548 4.548 8 H 0.049 0.951 9 C 0.252 3.748 10 N -0.453 5.453 11 C 0.029 3.971 12 C -0.127 4.127 13 C -0.090 4.090 14 C -0.118 4.118 15 C -0.071 4.071 16 C 0.010 3.990 17 N -0.482 5.482 18 C 0.177 3.823 19 C 0.359 3.641 20 F -0.199 7.199 21 F -0.193 7.193 22 H 0.274 0.726 23 H 0.037 0.963 24 H 0.032 0.968 25 H 0.114 0.886 26 H 0.165 0.835 27 H 0.174 0.826 28 H 0.151 0.849 29 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.509 -9.502 2.465 11.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.176 4.176 3 Si 0.793 3.207 4 H -0.196 1.196 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.586 4.586 8 H 0.068 0.932 9 C 0.132 3.868 10 N -0.138 5.138 11 C -0.082 4.082 12 C -0.148 4.148 13 C -0.109 4.109 14 C -0.138 4.138 15 C -0.090 4.090 16 C -0.110 4.110 17 N -0.204 5.204 18 C -0.089 4.089 19 C 0.304 3.696 20 F -0.181 7.181 21 F -0.175 7.175 22 H 0.083 0.917 23 H 0.055 0.945 24 H 0.050 0.950 25 H 0.132 0.868 26 H 0.182 0.818 27 H 0.191 0.809 28 H 0.168 0.832 29 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 6.624 -9.734 1.887 11.925 hybrid contribution -0.726 1.852 0.248 2.005 sum 5.898 -7.882 2.135 10.073 Atomic orbital electron populations 1.70003 1.07348 1.28934 1.49185 1.25716 0.95764 1.02705 0.93442 0.85384 0.78456 0.78095 0.78790 1.19550 1.19526 1.19535 1.21270 0.92888 0.90600 1.53871 0.93228 1.19412 0.86885 0.82125 0.98366 1.45835 1.35623 1.27554 1.04789 1.19561 1.00387 0.97543 0.90737 1.20335 1.03347 1.02271 0.88799 1.21342 0.95138 0.94072 1.00363 1.21102 0.99333 0.98909 0.94502 1.20346 0.98510 0.98201 0.91942 1.19576 1.01943 0.99653 0.89861 1.70105 1.19114 1.18852 1.12288 1.24199 0.97911 0.94770 0.92017 1.20098 0.78466 0.81638 0.89422 1.93004 1.34529 1.95543 1.95003 1.93081 1.91189 1.38304 1.94887 0.91685 0.94541 0.95017 0.86793 0.81776 0.80887 0.83163 0.79068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.36 13.29 21.45 0.28 -52.07 15 2 C 0.03 1.38 5.46 84.66 0.46 1.85 15 3 Si 0.97 43.49 29.54 68.60 2.03 45.52 15 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 15 5 H -0.27 -11.53 7.11 99.48 0.71 -10.82 15 6 H -0.27 -12.01 7.11 99.48 0.71 -11.30 15 7 C -0.55 -30.76 9.32 25.60 0.24 -30.52 15 8 H 0.05 2.88 7.81 -2.91 -0.02 2.86 15 9 C 0.25 13.34 5.62 85.63 0.48 13.82 15 10 N -0.45 -21.50 2.79 -509.63 -1.42 -22.92 15 11 C 0.03 1.26 6.88 38.86 0.27 1.53 15 12 C -0.13 -4.65 10.05 22.32 0.22 -4.43 15 13 C -0.09 -2.36 10.03 22.31 0.22 -2.13 15 14 C -0.12 -2.75 9.96 22.02 0.22 -2.53 15 15 C -0.07 -2.04 10.05 22.25 0.22 -1.82 15 16 C 0.01 0.39 7.23 39.45 0.29 0.68 15 17 N -0.48 -19.57 11.27 -179.97 -2.03 -21.60 15 18 C 0.18 7.58 7.29 137.92 1.01 8.58 15 19 C 0.36 13.03 5.33 71.24 0.38 13.41 15 20 F -0.20 -7.72 16.32 44.97 0.73 -6.98 15 21 F -0.19 -8.12 17.18 44.97 0.77 -7.35 15 22 H 0.27 14.61 8.31 -92.71 -0.77 13.83 15 23 H 0.04 2.04 6.89 -2.39 -0.02 2.03 15 24 H 0.03 1.76 8.14 -2.39 -0.02 1.74 15 25 H 0.11 4.32 8.06 -2.91 -0.02 4.30 15 26 H 0.16 3.00 8.06 -2.91 -0.02 2.98 15 27 H 0.17 2.38 8.06 -2.91 -0.02 2.35 15 28 H 0.15 3.48 8.06 -2.91 -0.02 3.46 15 29 H 0.19 4.79 8.14 -2.39 -0.02 4.77 15 Total: -1.00 -67.47 270.45 5.56 -61.92 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: 1.18 Total: 5.04 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: 4.01 Total: -1.56 kcal Atomic # 7 Polarization: -93.42 SS G_CDS: -3.16 Total: -96.59 kcal Atomic # 9 Polarization: -15.84 SS G_CDS: 1.51 Total: -14.33 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -67.47 5.56 -61.92 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016904043.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.639 kcal (2) G-P(sol) polarization free energy of solvation -67.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds