Wall clock time and date at job start Sun Mar 29 2020 22:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.36003 * 117.00362 * 2 1 4 4 C 1.37662 * 119.80808 * 0.02562 * 3 2 1 5 5 C 1.40845 * 119.89522 * 180.02562 * 4 3 2 6 6 C 1.41003 * 120.20563 * 179.97438 * 5 4 3 7 7 H 1.07998 * 120.00112 * 204.90452 * 6 5 4 8 8 C 1.39835 * 119.99856 * 24.90268 * 6 5 4 9 9 N 1.30950 * 119.99831 * 17.75500 * 8 6 5 10 10 Si 1.86794 * 120.00053 * 197.75927 * 8 6 5 11 11 H 1.48500 * 109.47142 * 90.00111 * 10 8 6 12 12 H 1.48498 * 109.46889 * 209.99875 * 10 8 6 13 13 H 1.48495 * 109.47316 * 329.99938 * 10 8 6 14 14 C 1.41315 * 119.59544 * 0.02562 * 5 4 3 15 15 O 1.35816 * 120.09954 * 179.71522 * 14 5 4 16 16 C 1.42901 * 116.99835 * 89.99871 * 15 14 5 17 17 C 1.38493 * 119.80530 * 359.97438 * 14 5 4 18 18 C 1.39363 * 120.09355 * 0.02562 * 17 14 5 19 19 O 1.36440 * 108.59397 * 180.02562 * 18 17 14 20 20 C 1.43970 * 105.53986 * 342.60694 * 19 18 17 21 21 O 1.36668 * 131.28966 * 179.97438 * 17 14 5 22 22 H 1.09001 * 109.47266 * 59.99646 * 1 2 3 23 23 H 1.09002 * 109.46974 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.47160 * 299.99178 * 1 2 3 25 25 H 1.07996 * 120.05040 * 0.02562 * 4 3 2 26 26 H 0.97003 * 120.00263 * 180.02562 * 9 8 6 27 27 H 1.09005 * 109.47147 * 299.99751 * 16 15 14 28 28 H 1.08991 * 109.47523 * 60.00045 * 16 15 14 29 29 H 1.09005 * 109.47125 * 180.02562 * 16 15 14 30 30 H 1.09000 * 110.58525 * 268.71159 * 20 19 18 31 31 H 1.08996 * 110.68825 * 145.89776 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2929 2.3638 0.0005 5 6 1.9305 3.6197 0.0000 6 6 1.1651 4.8039 0.0000 7 1 1.5842 5.7178 -0.3942 8 6 -0.1368 4.7949 0.5104 9 7 -0.5274 3.8184 1.2906 10 14 -1.3186 6.1756 0.0792 11 1 -2.0656 5.8208 -1.1542 12 1 -2.2754 6.3754 1.1972 13 1 -0.5544 7.4284 -0.1481 14 6 3.3421 3.6857 -0.0017 15 8 3.9675 4.8913 -0.0080 16 6 4.2675 5.4732 1.2622 17 6 4.0859 2.5175 -0.0022 18 6 3.4441 1.2805 -0.0016 19 8 4.3916 0.2987 -0.0017 20 6 5.6117 0.9403 -0.4170 21 8 5.4365 2.3083 -0.0041 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8901 25 1 0.2146 2.3047 0.0014 26 1 -1.4306 3.8119 1.6444 27 1 3.3431 5.6258 1.8193 28 1 4.9230 4.8062 1.8218 29 1 4.7646 6.4320 1.1143 30 1 5.7278 0.8791 -1.4990 31 1 6.4708 0.4955 0.0851 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034929171.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:59:19 Heat of formation + Delta-G solvation = -114.458158 kcal Electronic energy + Delta-G solvation = -19067.209524 eV Core-core repulsion = 15894.839907 eV Total energy + Delta-G solvation = -3172.369617 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.92817 -38.45030 -37.57159 -35.14393 -34.92059 -33.20434 -29.42464 -28.22883 -26.81414 -26.27951 -25.08915 -24.13999 -21.63148 -20.80380 -18.30811 -17.30934 -16.68046 -16.28775 -16.05666 -15.70477 -14.94554 -14.86023 -14.57721 -14.23665 -13.65090 -13.32018 -13.14312 -12.53809 -12.00981 -11.89181 -11.77628 -11.61679 -11.47752 -11.35742 -10.94769 -10.64581 -10.54614 -10.39402 -10.00859 -9.68559 -8.93154 -8.87190 -7.14173 -7.06013 -6.84693 -4.57529 2.44633 2.50500 2.95867 3.00488 3.01441 3.74093 3.85215 4.12919 4.31676 4.46960 4.87094 5.39642 5.44562 5.58078 5.76615 5.87271 6.06842 6.13075 6.18398 6.27862 6.37886 6.44367 6.62638 6.65621 6.89113 6.91369 7.17585 7.58550 7.75893 7.92597 8.12608 8.41489 8.46912 8.58476 8.94920 9.90325 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.020623 B = 0.009807 C = 0.006920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.396973 B = 2854.542218 C = 4045.469654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.327 6.327 3 C 0.166 3.834 4 C -0.243 4.243 5 C 0.138 3.862 6 C -0.431 4.431 7 H 0.092 0.908 8 C 0.074 3.926 9 N -0.782 5.782 10 Si 0.916 3.084 11 H -0.265 1.265 12 H -0.276 1.276 13 H -0.258 1.258 14 C -0.036 4.036 15 O -0.317 6.317 16 C 0.034 3.966 17 C 0.081 3.919 18 C -0.126 4.126 19 O -0.314 6.314 20 C 0.214 3.786 21 O -0.317 6.317 22 H 0.048 0.952 23 H 0.084 0.916 24 H 0.058 0.942 25 H 0.146 0.854 26 H 0.285 0.715 27 H 0.044 0.956 28 H 0.028 0.972 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.814 -1.441 -0.946 1.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.241 6.241 3 C 0.121 3.879 4 C -0.263 4.263 5 C 0.134 3.866 6 C -0.459 4.459 7 H 0.110 0.890 8 C -0.146 4.146 9 N -0.406 5.406 10 Si 0.739 3.261 11 H -0.189 1.189 12 H -0.201 1.201 13 H -0.182 1.182 14 C -0.081 4.081 15 O -0.233 6.233 16 C -0.061 4.061 17 C 0.037 3.963 18 C -0.170 4.170 19 O -0.232 6.232 20 C 0.101 3.899 21 O -0.234 6.234 22 H 0.067 0.933 23 H 0.102 0.898 24 H 0.077 0.923 25 H 0.164 0.836 26 H 0.096 0.904 27 H 0.063 0.937 28 H 0.047 0.953 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 0.920 -1.686 -0.838 2.096 hybrid contribution -0.597 0.469 0.158 0.776 sum 0.323 -1.217 -0.680 1.431 Atomic orbital electron populations 1.22867 0.79467 1.01962 1.01775 1.85985 1.20515 1.27970 1.89608 1.17799 0.86712 0.84654 0.98723 1.21073 1.00077 0.89495 1.15682 1.17252 0.88290 0.93466 0.87567 1.19491 0.96415 0.96643 1.33342 0.88976 1.26042 0.98853 0.97330 0.92332 1.69871 1.19220 1.30656 1.20859 0.86168 0.79491 0.81247 0.79162 1.18940 1.20104 1.18190 1.17586 0.89285 0.80802 1.20475 1.86013 1.77280 1.32724 1.27327 1.22814 0.99283 0.96814 0.87166 1.19628 0.80734 0.93984 1.01995 1.18115 0.87965 0.84962 1.25942 1.87171 1.17263 1.32264 1.86508 1.25197 0.89305 0.76827 0.98548 1.87286 1.21271 1.29808 1.85015 0.93304 0.89788 0.92307 0.83625 0.90386 0.93697 0.95327 0.90911 0.91889 0.87138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 9.80 101.05 0.99 1.60 16 2 O -0.33 -7.37 10.50 -19.75 -0.21 -7.58 16 3 C 0.17 4.13 6.70 -39.16 -0.26 3.87 16 4 C -0.24 -6.11 7.65 -38.81 -0.30 -6.41 16 5 C 0.14 3.61 5.58 -106.69 -0.60 3.01 16 6 C -0.43 -10.84 8.70 -37.94 -0.33 -11.17 16 7 H 0.09 2.30 7.64 -52.49 -0.40 1.90 16 8 C 0.07 1.72 5.13 -17.33 -0.09 1.63 16 9 N -0.78 -18.42 10.97 55.54 0.61 -17.81 16 10 Si 0.92 17.37 29.59 -169.99 -5.03 12.34 16 11 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 12 H -0.28 -5.10 7.11 56.52 0.40 -4.70 16 13 H -0.26 -4.91 7.11 56.52 0.40 -4.50 16 14 C -0.04 -0.93 5.76 -38.32 -0.22 -1.15 16 15 O -0.32 -7.75 9.69 -19.16 -0.19 -7.94 16 16 C 0.03 0.70 11.13 101.05 1.12 1.83 16 17 C 0.08 2.04 7.06 -39.07 -0.28 1.77 16 18 C -0.13 -3.18 7.11 -38.53 -0.27 -3.46 16 19 O -0.31 -7.23 11.40 -45.82 -0.52 -7.76 16 20 C 0.21 4.00 8.89 101.05 0.90 4.90 16 21 O -0.32 -7.20 11.41 -46.69 -0.53 -7.73 16 22 H 0.05 0.83 7.65 -51.93 -0.40 0.43 16 23 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 24 H 0.06 1.06 7.65 -51.93 -0.40 0.67 16 25 H 0.15 3.55 4.36 -52.49 -0.23 3.32 16 26 H 0.29 6.03 8.30 -40.82 -0.34 5.70 16 27 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.11 1.60 8.14 -51.93 -0.42 1.17 16 LS Contribution 272.83 15.07 4.11 4.11 Total: -1.00 -29.50 272.83 -4.18 -33.69 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -3.09 Total: 2.25 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: 0.67 Total: -3.57 kcal Atomic # 7 Polarization: -18.42 SS G_CDS: 0.61 Total: -17.81 kcal Atomic # 8 Polarization: -29.55 SS G_CDS: -1.45 Total: -31.00 kcal Atomic # 14 Polarization: 17.37 SS G_CDS: -5.03 Total: 12.34 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -29.50 -4.18 -33.69 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034929171.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.772 kcal (2) G-P(sol) polarization free energy of solvation -29.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds