Wall clock time and date at job start Sun Mar 29 2020 22:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.36003 * 117.00362 * 2 1 4 4 C 1.37662 * 119.80808 * 0.02562 * 3 2 1 5 5 C 1.40845 * 119.89522 * 180.02562 * 4 3 2 6 6 C 1.41003 * 120.20563 * 179.97438 * 5 4 3 7 7 H 1.07998 * 120.00112 * 204.90452 * 6 5 4 8 8 C 1.39835 * 119.99856 * 24.90268 * 6 5 4 9 9 N 1.30950 * 119.99831 * 17.75500 * 8 6 5 10 10 Si 1.86794 * 120.00053 * 197.75927 * 8 6 5 11 11 H 1.48500 * 109.47142 * 90.00111 * 10 8 6 12 12 H 1.48498 * 109.46889 * 209.99875 * 10 8 6 13 13 H 1.48495 * 109.47316 * 329.99938 * 10 8 6 14 14 C 1.41315 * 119.59544 * 0.02562 * 5 4 3 15 15 O 1.35816 * 120.09954 * 179.71522 * 14 5 4 16 16 C 1.42901 * 116.99835 * 89.99871 * 15 14 5 17 17 C 1.38493 * 119.80530 * 359.97438 * 14 5 4 18 18 C 1.39363 * 120.09355 * 0.02562 * 17 14 5 19 19 O 1.36440 * 108.59397 * 180.02562 * 18 17 14 20 20 C 1.43970 * 105.53986 * 342.60694 * 19 18 17 21 21 O 1.36668 * 131.28966 * 179.97438 * 17 14 5 22 22 H 1.09001 * 109.47266 * 59.99646 * 1 2 3 23 23 H 1.09002 * 109.46974 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.47160 * 299.99178 * 1 2 3 25 25 H 1.07996 * 120.05040 * 0.02562 * 4 3 2 26 26 H 0.97003 * 120.00263 * 180.02562 * 9 8 6 27 27 H 1.09005 * 109.47147 * 299.99751 * 16 15 14 28 28 H 1.08991 * 109.47523 * 60.00045 * 16 15 14 29 29 H 1.09005 * 109.47125 * 180.02562 * 16 15 14 30 30 H 1.09000 * 110.58525 * 268.71159 * 20 19 18 31 31 H 1.08996 * 110.68825 * 145.89776 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2929 2.3638 0.0005 5 6 1.9305 3.6197 0.0000 6 6 1.1651 4.8039 0.0000 7 1 1.5842 5.7178 -0.3942 8 6 -0.1368 4.7949 0.5104 9 7 -0.5274 3.8184 1.2906 10 14 -1.3186 6.1756 0.0792 11 1 -2.0656 5.8208 -1.1542 12 1 -2.2754 6.3754 1.1972 13 1 -0.5544 7.4284 -0.1481 14 6 3.3421 3.6857 -0.0017 15 8 3.9675 4.8913 -0.0080 16 6 4.2675 5.4732 1.2622 17 6 4.0859 2.5175 -0.0022 18 6 3.4441 1.2805 -0.0016 19 8 4.3916 0.2987 -0.0017 20 6 5.6117 0.9403 -0.4170 21 8 5.4365 2.3083 -0.0041 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8901 25 1 0.2146 2.3047 0.0014 26 1 -1.4306 3.8119 1.6444 27 1 3.3431 5.6258 1.8193 28 1 4.9230 4.8062 1.8218 29 1 4.7646 6.4320 1.1143 30 1 5.7278 0.8791 -1.4990 31 1 6.4708 0.4955 0.0851 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034929171.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:59:18 Heat of formation + Delta-G solvation = -134.527337 kcal Electronic energy + Delta-G solvation = -19068.079789 eV Core-core repulsion = 15894.839907 eV Total energy + Delta-G solvation = -3173.239882 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.088 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.67114 -40.19715 -39.36597 -36.93632 -36.67861 -35.00686 -31.23911 -30.01431 -28.41930 -27.97089 -26.74327 -25.85579 -23.46084 -22.62229 -20.10134 -19.09910 -18.40199 -18.07133 -17.76880 -17.47958 -16.59535 -16.53385 -16.22766 -15.91656 -15.36932 -15.01106 -14.85849 -14.19470 -13.77458 -13.63300 -13.45840 -13.29046 -13.08140 -12.95739 -12.63242 -12.20952 -12.14529 -12.02477 -11.76837 -11.42365 -10.70800 -10.67764 -8.94795 -8.90029 -8.67155 -6.46348 0.60627 0.63675 1.41057 1.48333 1.54592 2.10407 2.19786 2.42032 2.57677 2.89224 3.08418 3.55275 4.02223 4.18292 4.32290 4.41315 4.46076 4.53412 4.65980 4.67170 4.68672 4.78900 4.83249 4.88440 5.07743 5.11161 5.32978 5.69752 5.87420 6.15316 6.27630 6.55238 6.65663 6.72542 7.10207 8.16844 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.020623 B = 0.009807 C = 0.006920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.396973 B = 2854.542218 C = 4045.469654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.338 6.338 3 C 0.158 3.842 4 C -0.254 4.254 5 C 0.113 3.887 6 C -0.453 4.453 7 H 0.085 0.915 8 C 0.041 3.959 9 N -0.801 5.801 10 Si 0.987 3.013 11 H -0.258 1.258 12 H -0.263 1.263 13 H -0.259 1.259 14 C -0.058 4.058 15 O -0.333 6.333 16 C 0.034 3.966 17 C 0.073 3.927 18 C -0.145 4.145 19 O -0.328 6.328 20 C 0.205 3.795 21 O -0.328 6.328 22 H 0.052 0.948 23 H 0.126 0.874 24 H 0.051 0.949 25 H 0.149 0.851 26 H 0.298 0.702 27 H 0.033 0.967 28 H 0.028 0.972 29 H 0.110 0.890 30 H 0.087 0.913 31 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.290 -1.238 -1.044 1.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.252 6.252 3 C 0.113 3.887 4 C -0.274 4.274 5 C 0.109 3.891 6 C -0.480 4.480 7 H 0.103 0.897 8 C -0.177 4.177 9 N -0.425 5.425 10 Si 0.807 3.193 11 H -0.182 1.182 12 H -0.188 1.188 13 H -0.183 1.183 14 C -0.104 4.104 15 O -0.250 6.250 16 C -0.060 4.060 17 C 0.028 3.972 18 C -0.189 4.189 19 O -0.247 6.247 20 C 0.094 3.906 21 O -0.244 6.244 22 H 0.071 0.929 23 H 0.144 0.856 24 H 0.069 0.931 25 H 0.166 0.834 26 H 0.109 0.891 27 H 0.052 0.948 28 H 0.047 0.953 29 H 0.129 0.871 30 H 0.104 0.896 31 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 0.412 -1.511 -0.930 1.821 hybrid contribution -0.394 0.352 0.221 0.573 sum 0.018 -1.158 -0.709 1.358 Atomic orbital electron populations 1.23160 0.77035 1.04680 1.01554 1.85964 1.22993 1.26946 1.89331 1.17948 0.87118 0.85323 0.98313 1.21093 1.00197 0.89512 1.16623 1.17606 0.88894 0.94329 0.88241 1.19635 0.97818 0.96184 1.34378 0.89663 1.26841 0.99556 0.99832 0.91493 1.69877 1.20239 1.31882 1.20528 0.85107 0.77115 0.77777 0.79301 1.18198 1.18765 1.18300 1.17786 0.89628 0.81557 1.21429 1.85940 1.77185 1.32455 1.29380 1.22972 0.99033 0.98256 0.85761 1.19741 0.81782 0.93938 1.01748 1.18349 0.88612 0.85560 1.26400 1.87117 1.18135 1.32459 1.86948 1.25829 0.89065 0.75004 1.00706 1.87241 1.19967 1.32027 1.85210 0.92915 0.85590 0.93079 0.83413 0.89133 0.94818 0.95297 0.87133 0.89591 0.82458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.03 9.80 113.37 1.11 2.15 16 2 O -0.34 -15.20 10.50 -93.58 -0.98 -16.18 16 3 C 0.16 8.00 6.70 22.54 0.15 8.15 16 4 C -0.25 -13.06 7.65 22.77 0.17 -12.88 16 5 C 0.11 6.07 5.58 -21.21 -0.12 5.95 16 6 C -0.45 -23.13 8.70 23.33 0.20 -22.93 16 7 H 0.09 4.34 7.64 -2.91 -0.02 4.32 16 8 C 0.04 1.89 5.13 85.21 0.44 2.33 16 9 N -0.80 -37.50 10.97 21.81 0.24 -37.26 16 10 Si 0.99 34.68 29.59 68.60 2.03 36.71 16 11 H -0.26 -8.74 7.11 99.48 0.71 -8.04 16 12 H -0.26 -8.67 7.11 99.48 0.71 -7.97 16 13 H -0.26 -9.10 7.11 99.48 0.71 -8.39 16 14 C -0.06 -3.10 5.76 23.09 0.13 -2.96 16 15 O -0.33 -16.49 9.69 -91.48 -0.89 -17.38 16 16 C 0.03 1.39 11.13 113.37 1.26 2.66 16 17 C 0.07 3.72 7.06 22.60 0.16 3.88 16 18 C -0.15 -7.41 7.11 22.95 0.16 -7.25 16 19 O -0.33 -14.93 11.40 -75.03 -0.86 -15.78 16 20 C 0.21 7.33 8.89 113.37 1.01 8.33 16 21 O -0.33 -14.72 11.41 -77.60 -0.89 -15.60 16 22 H 0.05 1.76 7.65 -2.39 -0.02 1.74 16 23 H 0.13 3.21 8.14 -2.39 -0.02 3.19 16 24 H 0.05 1.82 7.65 -2.38 -0.02 1.81 16 25 H 0.15 7.33 4.36 -2.91 -0.01 7.32 16 26 H 0.30 12.28 8.30 -92.71 -0.77 11.52 16 27 H 0.03 1.41 8.14 -2.38 -0.02 1.39 16 28 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.11 3.55 8.14 -2.38 -0.02 3.53 16 30 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 31 H 0.16 4.05 8.14 -2.39 -0.02 4.03 16 Total: -1.00 -64.37 272.83 4.51 -59.86 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: 1.16 Total: 18.21 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: 4.68 Total: -12.58 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: 0.24 Total: -37.26 kcal Atomic # 8 Polarization: -61.34 SS G_CDS: -3.61 Total: -64.95 kcal Atomic # 14 Polarization: 34.68 SS G_CDS: 2.03 Total: 36.71 kcal Total: -64.37 4.51 -59.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034929171.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.665 kcal (2) G-P(sol) polarization free energy of solvation -64.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds