Wall clock time and date at job start Sun Mar 29 2020 23:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30632 * 119.25415 * 2 1 4 4 C 1.33523 * 121.50639 * 179.97438 * 3 2 1 5 5 C 1.50697 * 120.04745 * 179.97438 * 4 3 2 6 6 C 1.36204 * 119.90802 * 0.02562 * 4 3 2 7 7 C 1.50695 * 120.70089 * 180.02562 * 6 4 3 8 8 C 1.50702 * 109.47663 * 94.99604 * 7 6 4 9 9 O 1.21212 * 119.99506 * 359.97438 * 8 7 6 10 10 O 1.34308 * 120.00133 * 179.97438 * 8 7 6 11 11 C 1.34922 * 116.99719 * 179.97438 * 10 8 7 12 12 H 1.08000 * 120.00394 * 0.02562 * 11 10 8 13 13 C 1.38750 * 120.00117 * 179.97438 * 11 10 8 14 14 N 1.31442 * 119.99715 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 120.00366 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47156 * 0.02562 * 15 13 11 17 17 H 1.48495 * 109.47219 * 120.00447 * 15 13 11 18 18 H 1.48507 * 109.47405 * 240.00746 * 15 13 11 19 19 C 1.41017 * 118.59131 * 359.97438 * 6 4 3 20 20 O 1.21991 * 120.70480 * 180.02562 * 19 6 4 21 21 N 1.34752 * 119.25272 * 179.72609 * 2 1 3 22 22 H 0.97002 * 120.04017 * 0.02598 * 21 2 1 23 23 H 1.09002 * 109.47152 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46980 * 240.00137 * 1 2 3 25 25 H 1.09004 * 109.47113 * 120.00118 * 1 2 3 26 26 H 1.09004 * 109.47231 * 0.02562 * 5 4 3 27 27 H 1.08994 * 109.47360 * 120.00488 * 5 4 3 28 28 H 1.09006 * 109.47355 * 240.00641 * 5 4 3 29 29 H 1.09003 * 109.46983 * 214.99542 * 7 6 4 30 30 H 1.09002 * 109.47444 * 334.99306 * 7 6 4 31 31 H 0.97007 * 120.00268 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1454 1.1397 0.0000 4 6 3.4796 1.1922 0.0005 5 6 4.1823 2.5253 -0.0001 6 6 4.2046 0.0391 0.0005 7 6 5.7111 0.0775 0.0017 8 6 6.2155 -0.0340 1.4174 9 8 5.4294 -0.1343 2.3346 10 8 7.5359 -0.0224 1.6627 11 6 7.9202 -0.1253 2.9519 12 1 7.1779 -0.2124 3.7315 13 6 9.2693 -0.1204 3.2762 14 7 10.1728 -0.0149 2.3274 15 14 9.8015 -0.2636 5.0610 16 1 8.6009 -0.3699 5.9285 17 1 10.6432 -1.4751 5.2309 18 1 10.5834 0.9399 5.4426 19 6 3.5156 -1.1913 0.0005 20 8 4.1264 -2.2472 0.0010 21 7 2.1655 -1.1757 0.0056 22 1 1.6702 -2.0097 0.0092 23 1 -0.3633 1.0277 -0.0005 24 1 -0.3633 -0.5138 0.8900 25 1 -0.3633 -0.5139 -0.8900 26 1 3.4426 3.3259 -0.0005 27 1 4.8060 2.6077 0.8900 28 1 4.8066 2.6066 -0.8900 29 1 6.0961 -0.7546 -0.5878 30 1 6.0509 1.0180 -0.4321 31 1 11.1161 -0.0111 2.5541 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000046412365.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:11:37 Heat of formation + Delta-G solvation = -84.245394 kcal Electronic energy + Delta-G solvation = -18313.495730 eV Core-core repulsion = 15174.728988 eV Total energy + Delta-G solvation = -3138.766742 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.094 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.70812 -38.84040 -37.63263 -35.93265 -34.77531 -32.47671 -32.04555 -30.57102 -29.18417 -26.68344 -24.87067 -22.53361 -22.46677 -20.14659 -18.42658 -17.95126 -17.62062 -16.62093 -15.82127 -15.80832 -14.66516 -14.41468 -14.34561 -14.08163 -13.79476 -13.56108 -13.33352 -13.07843 -12.57096 -12.31998 -12.14336 -11.90596 -11.62046 -11.52156 -11.05321 -10.45035 -10.35041 -10.27161 -10.06135 -9.96156 -9.70455 -8.95462 -8.49498 -8.13083 -6.32305 -3.99701 0.67423 1.97538 2.71337 3.16181 3.23963 3.31791 3.61606 3.65679 3.77904 4.07860 4.45055 4.73620 4.82135 4.99048 5.01796 5.14240 5.18868 5.33085 5.50798 5.64705 5.75674 5.79285 6.05314 6.16135 6.34427 6.49654 6.63329 6.92140 7.48669 7.83763 8.01978 8.05062 8.82528 9.16768 9.96782 10.86134 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.037000 B = 0.005272 C = 0.005139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.574226 B = 5309.562228 C = 5447.585549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.384 3.616 3 N -0.531 5.531 4 C 0.180 3.820 5 C -0.110 4.110 6 C -0.225 4.225 7 C -0.043 4.043 8 C 0.407 3.593 9 O -0.554 6.554 10 O -0.216 6.216 11 C -0.379 4.379 12 H 0.094 0.906 13 C 0.041 3.959 14 N -0.867 5.867 15 Si 0.941 3.059 16 H -0.267 1.267 17 H -0.277 1.277 18 H -0.276 1.276 19 C 0.532 3.468 20 O -0.528 6.528 21 N -0.631 5.631 22 H 0.414 0.586 23 H 0.104 0.896 24 H 0.092 0.908 25 H 0.091 0.909 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.559 2.814 -7.295 19.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.119 3.881 3 N -0.256 5.256 4 C 0.062 3.938 5 C -0.167 4.167 6 C -0.231 4.231 7 C -0.082 4.082 8 C 0.254 3.746 9 O -0.451 6.451 10 O -0.123 6.123 11 C -0.455 4.455 12 H 0.112 0.888 13 C -0.163 4.163 14 N -0.505 5.505 15 Si 0.766 3.234 16 H -0.191 1.191 17 H -0.202 1.202 18 H -0.202 1.202 19 C 0.330 3.670 20 O -0.405 6.405 21 N -0.271 5.271 22 H 0.252 0.748 23 H 0.123 0.877 24 H 0.111 0.889 25 H 0.110 0.890 26 H 0.099 0.901 27 H 0.107 0.893 28 H 0.104 0.896 29 H 0.123 0.877 30 H 0.123 0.877 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.235 3.063 -7.068 18.878 hybrid contribution 0.518 -1.258 0.931 1.648 sum -16.717 1.805 -6.137 17.899 Atomic orbital electron populations 1.20968 0.85224 1.06500 1.04114 1.23081 0.96275 0.81108 0.87656 1.68125 1.09773 1.23752 1.23914 1.20968 0.88270 0.96030 0.88506 1.20833 1.00267 0.91807 1.03825 1.20815 0.97361 0.91847 1.13109 1.19637 0.88878 1.05320 0.94325 1.22949 0.82775 0.78323 0.90601 1.90532 1.57295 1.50456 1.46813 1.83876 1.21725 1.75596 1.31152 1.21246 0.92065 1.51502 0.80716 0.88839 1.25306 0.94498 0.96432 1.00022 1.70007 1.01148 1.46967 1.32354 0.85639 0.78895 0.78078 0.80779 1.19068 1.20218 1.20197 1.17005 0.80502 0.91268 0.78221 1.90991 1.65506 1.32902 1.51091 1.44612 1.09740 1.10533 1.62189 0.74751 0.87732 0.88932 0.89007 0.90145 0.89301 0.89566 0.87668 0.87732 0.92249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.59 10.27 36.01 0.37 -0.22 16 2 C 0.38 4.28 7.71 -155.57 -1.20 3.08 16 3 N -0.53 -7.33 10.18 -6.89 -0.07 -7.40 16 4 C 0.18 2.86 6.77 -82.59 -0.56 2.31 16 5 C -0.11 -1.47 8.89 36.00 0.32 -1.15 16 6 C -0.22 -4.18 4.41 -104.30 -0.46 -4.64 16 7 C -0.04 -0.87 5.39 -29.04 -0.16 -1.02 16 8 C 0.41 10.81 7.90 36.01 0.28 11.09 16 9 O -0.55 -15.96 15.27 -19.05 -0.29 -16.25 16 10 O -0.22 -6.53 9.75 -20.70 -0.20 -6.73 16 11 C -0.38 -11.76 9.64 30.92 0.30 -11.46 16 12 H 0.09 2.94 6.86 -52.49 -0.36 2.58 16 13 C 0.04 1.20 5.49 -17.53 -0.10 1.10 16 14 N -0.87 -26.28 13.67 55.48 0.76 -25.52 16 15 Si 0.94 22.16 29.55 -169.99 -5.02 17.14 16 16 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 17 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 18 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 19 C 0.53 9.87 7.74 -15.10 -0.12 9.75 16 20 O -0.53 -11.74 17.27 4.93 0.09 -11.66 16 21 N -0.63 -8.09 5.25 -12.27 -0.06 -8.16 16 22 H 0.41 3.87 8.78 -40.82 -0.36 3.51 16 23 H 0.10 0.52 8.10 -51.93 -0.42 0.10 16 24 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 26 H 0.08 0.91 8.12 -51.93 -0.42 0.49 16 27 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 28 H 0.09 0.97 7.52 -51.93 -0.39 0.57 16 29 H 0.11 2.12 7.82 -51.93 -0.41 1.71 16 30 H 0.10 1.76 6.51 -51.93 -0.34 1.43 16 31 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 282.90 15.07 4.26 4.26 Total: -1.00 -39.88 282.90 -4.96 -44.84 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -3.10 Total: 0.63 kcal Atomic # 6 Polarization: 10.16 SS G_CDS: -1.32 Total: 8.84 kcal Atomic # 7 Polarization: -41.70 SS G_CDS: 0.62 Total: -41.08 kcal Atomic # 8 Polarization: -34.23 SS G_CDS: -0.41 Total: -34.64 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -39.88 -4.96 -44.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046412365.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.406 kcal (2) G-P(sol) polarization free energy of solvation -39.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds