Wall clock time and date at job start Sun Mar 29 2020 23:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30632 * 119.25415 * 2 1 4 4 C 1.33523 * 121.50639 * 179.97438 * 3 2 1 5 5 C 1.50697 * 120.04745 * 179.97438 * 4 3 2 6 6 C 1.36204 * 119.90802 * 0.02562 * 4 3 2 7 7 C 1.50695 * 120.70089 * 180.02562 * 6 4 3 8 8 C 1.50702 * 109.47663 * 94.99604 * 7 6 4 9 9 O 1.21212 * 119.99506 * 359.97438 * 8 7 6 10 10 O 1.34308 * 120.00133 * 179.97438 * 8 7 6 11 11 C 1.34922 * 116.99719 * 179.97438 * 10 8 7 12 12 H 1.08000 * 120.00394 * 0.02562 * 11 10 8 13 13 C 1.38750 * 120.00117 * 179.97438 * 11 10 8 14 14 N 1.31442 * 119.99715 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 120.00366 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47156 * 0.02562 * 15 13 11 17 17 H 1.48495 * 109.47219 * 120.00447 * 15 13 11 18 18 H 1.48507 * 109.47405 * 240.00746 * 15 13 11 19 19 C 1.41017 * 118.59131 * 359.97438 * 6 4 3 20 20 O 1.21991 * 120.70480 * 180.02562 * 19 6 4 21 21 N 1.34752 * 119.25272 * 179.72609 * 2 1 3 22 22 H 0.97002 * 120.04017 * 0.02598 * 21 2 1 23 23 H 1.09002 * 109.47152 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46980 * 240.00137 * 1 2 3 25 25 H 1.09004 * 109.47113 * 120.00118 * 1 2 3 26 26 H 1.09004 * 109.47231 * 0.02562 * 5 4 3 27 27 H 1.08994 * 109.47360 * 120.00488 * 5 4 3 28 28 H 1.09006 * 109.47355 * 240.00641 * 5 4 3 29 29 H 1.09003 * 109.46983 * 214.99542 * 7 6 4 30 30 H 1.09002 * 109.47444 * 334.99306 * 7 6 4 31 31 H 0.97007 * 120.00268 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1454 1.1397 0.0000 4 6 3.4796 1.1922 0.0005 5 6 4.1823 2.5253 -0.0001 6 6 4.2046 0.0391 0.0005 7 6 5.7111 0.0775 0.0017 8 6 6.2155 -0.0340 1.4174 9 8 5.4294 -0.1343 2.3346 10 8 7.5359 -0.0224 1.6627 11 6 7.9202 -0.1253 2.9519 12 1 7.1779 -0.2124 3.7315 13 6 9.2693 -0.1204 3.2762 14 7 10.1728 -0.0149 2.3274 15 14 9.8015 -0.2636 5.0610 16 1 8.6009 -0.3699 5.9285 17 1 10.6432 -1.4751 5.2309 18 1 10.5834 0.9399 5.4426 19 6 3.5156 -1.1913 0.0005 20 8 4.1264 -2.2472 0.0010 21 7 2.1655 -1.1757 0.0056 22 1 1.6702 -2.0097 0.0092 23 1 -0.3633 1.0277 -0.0005 24 1 -0.3633 -0.5138 0.8900 25 1 -0.3633 -0.5139 -0.8900 26 1 3.4426 3.3259 -0.0005 27 1 4.8060 2.6077 0.8900 28 1 4.8066 2.6066 -0.8900 29 1 6.0961 -0.7546 -0.5878 30 1 6.0509 1.0180 -0.4321 31 1 11.1161 -0.0111 2.5541 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000046412365.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:11:37 Heat of formation + Delta-G solvation = -114.545923 kcal Electronic energy + Delta-G solvation = -18314.809660 eV Core-core repulsion = 15174.728988 eV Total energy + Delta-G solvation = -3140.080672 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.094 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.92967 -40.95171 -38.97833 -37.59631 -36.53122 -34.32589 -33.73368 -31.67953 -30.24018 -28.27977 -26.83021 -23.80698 -23.57284 -22.05329 -19.90508 -19.65577 -19.18144 -18.59586 -17.21104 -17.09859 -16.63582 -16.41958 -16.24294 -15.26730 -14.86115 -14.84788 -14.49875 -14.17627 -13.98691 -13.73947 -13.61933 -13.30433 -13.05230 -12.79142 -12.74016 -12.34410 -12.20100 -12.01557 -11.62415 -11.41165 -11.19231 -11.08851 -10.71140 -9.47973 -8.55187 -6.35687 -0.47491 0.72332 1.28297 1.31423 1.50386 1.61260 1.64692 2.09121 2.37850 2.85671 2.94698 2.97642 3.39145 3.64366 3.77992 4.00414 4.43403 4.49546 4.57168 4.66136 4.66693 4.70514 4.84071 4.89100 5.13689 5.14111 5.20286 5.31162 5.62169 5.82116 6.64507 6.71578 6.73323 6.89310 7.75725 8.65988 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.037000 B = 0.005272 C = 0.005139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.574226 B = 5309.562228 C = 5447.585549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.403 3.597 3 N -0.548 5.548 4 C 0.208 3.792 5 C -0.113 4.113 6 C -0.285 4.285 7 C -0.028 4.028 8 C 0.404 3.596 9 O -0.582 6.582 10 O -0.245 6.245 11 C -0.423 4.423 12 H 0.077 0.923 13 C -0.004 4.004 14 N -0.903 5.903 15 Si 1.019 2.981 16 H -0.268 1.268 17 H -0.260 1.260 18 H -0.254 1.254 19 C 0.521 3.479 20 O -0.584 6.584 21 N -0.617 5.617 22 H 0.433 0.567 23 H 0.115 0.885 24 H 0.117 0.883 25 H 0.127 0.873 26 H 0.104 0.896 27 H 0.068 0.932 28 H 0.110 0.890 29 H 0.099 0.901 30 H 0.136 0.864 31 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.561 3.746 -7.178 21.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.140 3.860 3 N -0.272 5.272 4 C 0.087 3.913 5 C -0.170 4.170 6 C -0.291 4.291 7 C -0.066 4.066 8 C 0.252 3.748 9 O -0.480 6.480 10 O -0.154 6.154 11 C -0.498 4.498 12 H 0.094 0.906 13 C -0.204 4.204 14 N -0.540 5.540 15 Si 0.837 3.163 16 H -0.192 1.192 17 H -0.184 1.184 18 H -0.178 1.178 19 C 0.321 3.679 20 O -0.466 6.466 21 N -0.256 5.256 22 H 0.274 0.726 23 H 0.134 0.866 24 H 0.135 0.865 25 H 0.145 0.855 26 H 0.123 0.877 27 H 0.086 0.914 28 H 0.128 0.872 29 H 0.117 0.883 30 H 0.154 0.846 31 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -19.314 3.989 -6.982 20.921 hybrid contribution 0.894 -1.485 0.820 1.917 sum -18.420 2.504 -6.162 19.584 Atomic orbital electron populations 1.21313 0.80151 1.08169 1.06780 1.24410 0.98648 0.79707 0.83245 1.68319 1.08390 1.24835 1.25706 1.21368 0.89288 0.96037 0.84563 1.20954 1.00877 0.91302 1.03852 1.20664 0.96331 0.93127 1.19014 1.19617 0.90668 1.06532 0.89809 1.24271 0.81472 0.76051 0.93049 1.90474 1.57607 1.51328 1.48542 1.83900 1.23830 1.76697 1.30965 1.21426 0.92876 1.54535 0.80992 0.90572 1.26556 0.93596 0.94701 1.05554 1.70085 1.02017 1.46810 1.35091 0.84571 0.78515 0.79434 0.73770 1.19190 1.18449 1.17766 1.17150 0.82214 0.90604 0.77889 1.90943 1.67166 1.34389 1.54090 1.44441 1.08148 1.12315 1.60673 0.72610 0.86613 0.86509 0.85525 0.87737 0.91379 0.87187 0.88299 0.84638 0.91111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.62 10.27 71.24 0.73 0.11 16 2 C 0.40 7.80 7.71 138.18 1.07 8.86 16 3 N -0.55 -13.78 10.18 -175.73 -1.79 -15.57 16 4 C 0.21 6.39 6.77 41.83 0.28 6.67 16 5 C -0.11 -2.85 8.89 71.23 0.63 -2.22 16 6 C -0.28 -10.74 4.41 -19.66 -0.09 -10.83 16 7 C -0.03 -1.17 5.39 29.10 0.16 -1.01 16 8 C 0.40 22.49 7.90 71.24 0.56 23.05 16 9 O -0.58 -35.12 15.27 20.77 0.32 -34.80 16 10 O -0.25 -15.59 9.75 14.88 0.15 -15.44 16 11 C -0.42 -27.35 9.64 67.94 0.66 -26.70 16 12 H 0.08 5.04 6.86 -2.91 -0.02 5.02 16 13 C 0.00 -0.24 5.49 84.87 0.47 0.22 16 14 N -0.90 -55.52 13.67 21.62 0.30 -55.22 16 15 Si 1.02 45.57 29.55 68.60 2.03 47.60 16 16 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 17 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 18 H -0.25 -10.37 7.11 99.48 0.71 -9.67 16 19 C 0.52 19.71 7.74 84.88 0.66 20.37 16 20 O -0.58 -27.22 17.27 -5.29 -0.09 -27.32 16 21 N -0.62 -14.94 5.25 -310.69 -1.63 -16.57 16 22 H 0.43 7.26 8.78 -92.71 -0.81 6.44 16 23 H 0.12 0.58 8.10 -2.39 -0.02 0.56 16 24 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 25 H 0.13 0.03 8.14 -2.38 -0.02 0.01 16 26 H 0.10 2.11 8.12 -2.38 -0.02 2.09 16 27 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.11 2.25 7.52 -2.38 -0.02 2.23 16 29 H 0.10 4.23 7.82 -2.39 -0.02 4.21 16 30 H 0.14 4.65 6.51 -2.39 -0.02 4.63 16 31 H 0.28 15.45 8.31 -92.70 -0.77 14.68 16 Total: -1.00 -92.40 282.90 4.77 -87.63 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: 0.37 Total: 11.14 kcal Atomic # 6 Polarization: 13.41 SS G_CDS: 5.12 Total: 18.54 kcal Atomic # 7 Polarization: -84.23 SS G_CDS: -3.12 Total: -87.36 kcal Atomic # 8 Polarization: -77.93 SS G_CDS: 0.37 Total: -77.56 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -92.40 4.77 -87.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046412365.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.912 kcal (2) G-P(sol) polarization free energy of solvation -92.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds