Wall clock time and date at job start Sun Mar 29 2020 22:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 120.00055 * 2 1 4 4 H 1.48498 * 109.47018 * 270.00641 * 3 2 1 5 5 H 1.48495 * 109.46726 * 30.00372 * 3 2 1 6 6 H 1.48498 * 109.47015 * 150.00240 * 3 2 1 7 7 C 1.37880 * 120.00000 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00179 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99837 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.46798 * 180.02562 * 9 7 2 11 11 O 1.45205 * 109.46913 * 180.02562 * 10 9 7 12 12 C 1.34790 * 116.99853 * 179.97438 * 11 10 9 13 13 O 1.21541 * 119.99867 * 359.97438 * 12 11 10 14 14 C 1.47147 * 119.99743 * 180.02562 * 12 11 10 15 15 C 1.39907 * 120.14167 * 359.72302 * 14 12 11 16 16 C 1.36530 * 120.08007 * 180.29706 * 15 14 12 17 17 C 1.39191 * 120.38107 * 359.95475 * 16 15 14 18 18 O 1.35698 * 119.85800 * 180.02562 * 17 16 15 19 19 C 1.38706 * 120.28437 * 0.04834 * 17 16 15 20 20 C 1.38473 * 119.91002 * 359.97199 * 19 17 16 21 21 O 1.35643 * 120.18683 * 179.97438 * 20 19 17 22 22 H 0.96997 * 120.00090 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46760 * 60.00394 * 9 7 2 24 24 H 1.08996 * 109.47391 * 300.00362 * 9 7 2 25 25 H 1.08993 * 109.47358 * 60.00307 * 10 9 7 26 26 H 1.09004 * 109.47225 * 300.00013 * 10 9 7 27 27 H 1.07996 * 119.96316 * 0.27595 * 15 14 12 28 28 H 1.08004 * 119.80897 * 179.97438 * 16 15 14 29 29 H 0.96695 * 114.00314 * 270.02731 * 18 17 16 30 30 H 1.07995 * 120.04560 * 180.02562 * 19 17 16 31 31 H 0.96697 * 114.00329 * 270.02125 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0023 11 8 5.4736 -2.6365 -0.0022 12 6 6.0855 -3.8375 -0.0027 13 8 5.4235 -4.8568 -0.0026 14 6 7.5549 -3.9145 -0.0021 15 6 8.3198 -2.7430 -0.0069 16 6 9.6831 -2.8159 -0.0125 17 6 10.3220 -4.0526 -0.0124 18 8 11.6776 -4.1126 -0.0175 19 6 9.5789 -5.2238 -0.0077 20 6 8.1955 -5.1637 -0.0025 21 8 7.4632 -6.3055 0.0016 22 1 -0.4850 0.8400 0.0004 23 1 3.8752 -0.6804 0.8889 24 1 3.8746 -0.6800 -0.8910 25 1 3.6579 -3.1497 -0.8924 26 1 3.6585 -3.1510 0.8875 27 1 7.8313 -1.7799 -0.0066 28 1 10.2693 -1.9088 -0.0166 29 1 12.0672 -4.1314 -0.9023 30 1 10.0785 -6.1812 -0.0073 31 1 7.2478 -6.6378 -0.8806 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057471809.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:35 Heat of formation + Delta-G solvation = -149.249886 kcal Electronic energy + Delta-G solvation = -17568.878848 eV Core-core repulsion = 14395.000549 eV Total energy + Delta-G solvation = -3173.878299 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.088 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.73626 -39.45506 -38.09314 -36.10553 -35.99041 -33.31626 -31.18628 -30.56430 -29.92245 -25.51123 -23.84932 -22.98189 -21.10746 -20.59441 -19.36209 -17.93229 -17.40855 -16.94288 -16.59697 -16.13971 -15.77913 -15.64787 -14.78692 -14.28027 -14.18592 -13.58874 -13.47628 -13.11252 -12.76576 -12.36798 -12.22405 -11.50638 -11.30542 -11.14331 -11.03905 -10.70769 -10.54978 -9.97525 -9.90647 -9.71349 -9.36148 -9.27942 -8.94494 -8.63532 -6.13931 -4.15230 0.35297 0.91715 2.52428 3.02108 3.26594 3.32343 3.34194 3.38182 3.67578 4.03708 4.37377 4.50828 4.70641 4.89444 5.10295 5.19568 5.24600 5.56231 5.79785 5.93599 5.95699 5.96768 5.98732 6.23571 6.44180 6.74973 7.15742 7.16947 7.20599 7.43026 7.61208 8.11322 8.38710 8.87916 9.45477 10.98689 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.035819 B = 0.004362 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.514814 B = 6417.791209 C = 7173.733242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.072 3.928 3 Si 0.882 3.118 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.528 4.528 8 H 0.076 0.924 9 C -0.009 4.009 10 C 0.084 3.916 11 O -0.359 6.359 12 C 0.500 3.500 13 O -0.497 6.497 14 C -0.160 4.160 15 C -0.029 4.029 16 C -0.170 4.170 17 C 0.153 3.847 18 O -0.496 6.496 19 C -0.190 4.190 20 C 0.190 3.810 21 O -0.475 6.475 22 H 0.266 0.734 23 H 0.028 0.972 24 H 0.024 0.976 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.150 0.850 28 H 0.139 0.861 29 H 0.396 0.604 30 H 0.143 0.857 31 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.809 -7.214 -3.405 24.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.708 3.292 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.566 4.566 8 H 0.094 0.906 9 C -0.047 4.047 10 C 0.012 3.988 11 O -0.276 6.276 12 C 0.344 3.656 13 O -0.386 6.386 14 C -0.162 4.162 15 C -0.047 4.047 16 C -0.188 4.188 17 C 0.108 3.892 18 O -0.307 6.307 19 C -0.209 4.209 20 C 0.143 3.857 21 O -0.287 6.287 22 H 0.076 0.924 23 H 0.047 0.953 24 H 0.042 0.958 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.168 0.832 28 H 0.157 0.843 29 H 0.254 0.746 30 H 0.161 0.839 31 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 22.359 -7.329 -2.198 23.632 hybrid contribution 0.231 0.711 -0.962 1.219 sum 22.590 -6.618 -3.160 23.750 Atomic orbital electron populations 1.69893 1.06294 1.27224 1.50079 1.24939 0.94764 0.99183 0.94123 0.86745 0.80436 0.83283 0.78709 1.20059 1.21158 1.18764 1.20843 0.88263 0.95068 1.52403 0.90624 1.19629 0.97030 0.90126 0.97870 1.23400 0.71930 1.01614 1.01888 1.86531 1.26446 1.31378 1.83235 1.20723 0.88329 0.82524 0.74019 1.90852 1.66652 1.36035 1.45043 1.19808 0.91106 0.94148 1.11152 1.21126 0.93082 0.98473 0.92025 1.21193 0.94848 0.97847 1.04933 1.18521 0.82962 0.91777 0.95907 1.84757 1.15887 1.96270 1.33813 1.21635 0.92797 0.99507 1.06958 1.18254 0.88739 0.84988 0.93679 1.84756 1.72436 1.37764 1.33722 0.92415 0.95349 0.95812 0.91642 0.91585 0.83187 0.84284 0.74612 0.83906 0.74232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.33 13.96 55.43 0.77 -26.56 16 2 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 3 Si 0.88 21.28 27.47 -169.99 -4.67 16.61 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.26 -6.10 6.54 56.52 0.37 -5.73 16 7 C -0.53 -14.99 9.66 -34.44 -0.33 -15.32 16 8 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 9 C -0.01 -0.22 4.42 -27.88 -0.12 -0.34 16 10 C 0.08 1.81 5.42 37.16 0.20 2.01 16 11 O -0.36 -6.84 9.46 -40.74 -0.39 -7.22 16 12 C 0.50 8.83 7.88 34.35 0.27 9.10 16 13 O -0.50 -9.85 14.95 -26.63 -0.40 -10.25 16 14 C -0.16 -2.23 5.89 -104.85 -0.62 -2.84 16 15 C -0.03 -0.33 9.55 -39.57 -0.38 -0.71 16 16 C -0.17 -1.58 9.91 -39.84 -0.39 -1.97 16 17 C 0.15 1.39 6.70 -39.05 -0.26 1.13 16 18 O -0.50 -3.62 13.48 -18.80 -0.25 -3.87 16 19 C -0.19 -1.85 9.92 -39.32 -0.39 -2.24 16 20 C 0.19 2.32 6.72 -38.69 -0.26 2.06 16 21 O -0.48 -5.94 11.57 -40.54 -0.47 -6.41 16 22 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 23 H 0.03 0.68 7.20 -51.93 -0.37 0.30 16 24 H 0.02 0.55 7.57 -51.93 -0.39 0.16 16 25 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 26 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 27 H 0.15 1.65 7.60 -52.49 -0.40 1.25 16 28 H 0.14 0.99 8.06 -52.48 -0.42 0.57 16 29 H 0.40 0.82 9.06 45.56 0.41 1.23 16 30 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 31 H 0.40 3.27 9.06 45.56 0.41 3.68 16 LS Contribution 282.36 15.07 4.26 4.26 Total: -1.00 -34.68 282.36 -5.15 -39.83 By element: Atomic # 1 Polarization: 2.38 SS G_CDS: -1.62 Total: 0.76 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: -2.38 Total: -7.15 kcal Atomic # 7 Polarization: -27.33 SS G_CDS: 0.77 Total: -26.56 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: -1.51 Total: -27.75 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.67 Total: 16.61 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -34.68 -5.15 -39.83 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057471809.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.419 kcal (2) G-P(sol) polarization free energy of solvation -34.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds