Wall clock time and date at job start Sun Mar 29 2020 22:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 120.00055 * 2 1 4 4 H 1.48498 * 109.47018 * 270.00641 * 3 2 1 5 5 H 1.48495 * 109.46726 * 30.00372 * 3 2 1 6 6 H 1.48498 * 109.47015 * 150.00240 * 3 2 1 7 7 C 1.37880 * 120.00000 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00179 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99837 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.46798 * 180.02562 * 9 7 2 11 11 O 1.45205 * 109.46913 * 180.02562 * 10 9 7 12 12 C 1.34790 * 116.99853 * 179.97438 * 11 10 9 13 13 O 1.21541 * 119.99867 * 359.97438 * 12 11 10 14 14 C 1.47147 * 119.99743 * 180.02562 * 12 11 10 15 15 C 1.39907 * 120.14167 * 359.72302 * 14 12 11 16 16 C 1.36530 * 120.08007 * 180.29706 * 15 14 12 17 17 C 1.39191 * 120.38107 * 359.95475 * 16 15 14 18 18 O 1.35698 * 119.85800 * 180.02562 * 17 16 15 19 19 C 1.38706 * 120.28437 * 0.04834 * 17 16 15 20 20 C 1.38473 * 119.91002 * 359.97199 * 19 17 16 21 21 O 1.35643 * 120.18683 * 179.97438 * 20 19 17 22 22 H 0.96997 * 120.00090 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46760 * 60.00394 * 9 7 2 24 24 H 1.08996 * 109.47391 * 300.00362 * 9 7 2 25 25 H 1.08993 * 109.47358 * 60.00307 * 10 9 7 26 26 H 1.09004 * 109.47225 * 300.00013 * 10 9 7 27 27 H 1.07996 * 119.96316 * 0.27595 * 15 14 12 28 28 H 1.08004 * 119.80897 * 179.97438 * 16 15 14 29 29 H 0.96695 * 114.00314 * 270.02731 * 18 17 16 30 30 H 1.07995 * 120.04560 * 180.02562 * 19 17 16 31 31 H 0.96697 * 114.00329 * 270.02125 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0023 11 8 5.4736 -2.6365 -0.0022 12 6 6.0855 -3.8375 -0.0027 13 8 5.4235 -4.8568 -0.0026 14 6 7.5549 -3.9145 -0.0021 15 6 8.3198 -2.7430 -0.0069 16 6 9.6831 -2.8159 -0.0125 17 6 10.3220 -4.0526 -0.0124 18 8 11.6776 -4.1126 -0.0175 19 6 9.5789 -5.2238 -0.0077 20 6 8.1955 -5.1637 -0.0025 21 8 7.4632 -6.3055 0.0016 22 1 -0.4850 0.8400 0.0004 23 1 3.8752 -0.6804 0.8889 24 1 3.8746 -0.6800 -0.8910 25 1 3.6579 -3.1497 -0.8924 26 1 3.6585 -3.1510 0.8875 27 1 7.8313 -1.7799 -0.0066 28 1 10.2693 -1.9088 -0.0166 29 1 12.0672 -4.1314 -0.9023 30 1 10.0785 -6.1812 -0.0073 31 1 7.2478 -6.6378 -0.8806 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057471809.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:34 Heat of formation + Delta-G solvation = -175.555179 kcal Electronic energy + Delta-G solvation = -17570.019531 eV Core-core repulsion = 14395.000549 eV Total energy + Delta-G solvation = -3175.018983 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.81952 -40.58056 -38.93152 -37.50985 -36.88797 -35.38514 -32.89569 -31.64211 -30.88023 -27.33728 -24.98760 -23.85224 -22.70232 -22.11043 -20.10936 -19.38815 -18.70041 -18.17869 -17.88784 -17.55085 -16.89719 -16.55180 -16.31171 -15.67226 -15.25739 -15.06282 -14.81584 -14.44908 -14.02436 -13.60711 -13.37551 -13.11813 -12.98075 -12.48490 -12.44540 -12.07094 -11.81638 -11.71895 -11.55396 -11.45255 -11.34990 -10.81480 -10.07175 -9.78781 -8.34658 -6.43314 -0.55634 0.13995 1.38362 1.39515 1.40672 1.53239 1.64092 2.34675 2.43351 2.90489 3.00204 3.29766 3.60750 3.78113 4.01765 4.15617 4.18215 4.26442 4.47313 4.60273 4.82273 4.88970 5.09357 5.13977 5.21769 5.27953 5.47499 5.51312 5.53425 6.15120 6.62773 6.65028 6.69211 6.78462 7.21836 8.81585 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.035819 B = 0.004362 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.514814 B = 6417.791209 C = 7173.733242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.011 3.989 3 Si 0.956 3.044 4 H -0.261 1.261 5 H -0.281 1.281 6 H -0.243 1.243 7 C -0.545 4.545 8 H 0.034 0.966 9 C -0.002 4.002 10 C 0.095 3.905 11 O -0.356 6.356 12 C 0.498 3.502 13 O -0.529 6.529 14 C -0.193 4.193 15 C -0.028 4.028 16 C -0.164 4.164 17 C 0.176 3.824 18 O -0.499 6.499 19 C -0.188 4.188 20 C 0.185 3.815 21 O -0.495 6.495 22 H 0.271 0.729 23 H 0.036 0.964 24 H 0.038 0.962 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.152 0.848 28 H 0.167 0.833 29 H 0.423 0.577 30 H 0.163 0.837 31 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.550 -5.997 -3.645 27.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.187 4.187 3 Si 0.778 3.222 4 H -0.186 1.186 5 H -0.207 1.207 6 H -0.166 1.166 7 C -0.582 4.582 8 H 0.052 0.948 9 C -0.039 4.039 10 C 0.022 3.978 11 O -0.273 6.273 12 C 0.344 3.656 13 O -0.420 6.420 14 C -0.194 4.194 15 C -0.046 4.046 16 C -0.182 4.182 17 C 0.130 3.870 18 O -0.314 6.314 19 C -0.207 4.207 20 C 0.139 3.861 21 O -0.308 6.308 22 H 0.080 0.920 23 H 0.054 0.946 24 H 0.056 0.944 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.170 0.830 28 H 0.184 0.816 29 H 0.285 0.715 30 H 0.180 0.820 31 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 26.139 -6.134 -2.470 26.963 hybrid contribution -0.815 0.201 -0.905 1.235 sum 25.324 -5.933 -3.375 26.228 Atomic orbital electron populations 1.70044 1.08403 1.28677 1.51342 1.25979 0.95682 1.03677 0.93341 0.85577 0.79531 0.77471 0.79631 1.18572 1.20665 1.16632 1.21121 0.90759 0.93805 1.52541 0.94800 1.19459 0.94106 0.91758 0.98613 1.22958 0.73823 0.99978 1.01061 1.86508 1.24534 1.32561 1.83707 1.21476 0.89916 0.81430 0.72759 1.90828 1.67645 1.36671 1.46862 1.19733 0.88515 0.96008 1.15175 1.21183 0.93997 0.97613 0.91818 1.21425 0.93939 0.99121 1.03759 1.18559 0.83790 0.91334 0.93312 1.84701 1.14507 1.96099 1.36116 1.21775 0.91556 1.00877 1.06480 1.18429 0.89667 0.84251 0.93746 1.84704 1.72865 1.38003 1.35278 0.92024 0.94590 0.94416 0.92298 0.92812 0.83014 0.81583 0.71478 0.81971 0.72574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.99 13.96 21.45 0.30 -58.69 16 2 C 0.01 0.65 5.47 84.66 0.46 1.11 16 3 Si 0.96 43.17 27.47 68.60 1.88 45.05 16 4 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.24 -10.12 6.54 99.48 0.65 -9.47 16 7 C -0.54 -31.76 9.66 25.60 0.25 -31.51 16 8 H 0.03 2.18 7.99 -2.91 -0.02 2.16 16 9 C 0.00 -0.09 4.42 29.85 0.13 0.04 16 10 C 0.10 4.18 5.42 71.98 0.39 4.57 16 11 O -0.36 -13.57 9.46 -57.02 -0.54 -14.11 16 12 C 0.50 17.79 7.88 70.16 0.55 18.35 16 13 O -0.53 -21.66 14.95 26.71 0.40 -21.26 16 14 C -0.19 -5.20 5.89 -20.01 -0.12 -5.31 16 15 C -0.03 -0.58 9.55 22.27 0.21 -0.37 16 16 C -0.16 -2.46 9.91 22.10 0.22 -2.24 16 17 C 0.18 2.51 6.70 22.61 0.15 2.67 16 18 O -0.50 -4.97 13.48 -90.18 -1.22 -6.18 16 19 C -0.19 -3.14 9.92 22.44 0.22 -2.91 16 20 C 0.19 4.32 6.72 22.85 0.15 4.47 16 21 O -0.49 -12.24 11.57 -68.63 -0.79 -13.03 16 22 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 23 H 0.04 1.66 7.20 -2.39 -0.02 1.65 16 24 H 0.04 1.70 7.57 -2.39 -0.02 1.68 16 25 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 26 H 0.05 2.45 8.14 -2.38 -0.02 2.43 16 27 H 0.15 3.04 7.60 -2.91 -0.02 3.02 16 28 H 0.17 1.60 8.06 -2.91 -0.02 1.57 16 29 H 0.42 -0.34 9.06 -74.06 -0.67 -1.02 16 30 H 0.16 2.04 8.06 -2.91 -0.02 2.02 16 31 H 0.41 6.79 9.06 -74.06 -0.67 6.12 16 Total: -1.00 -76.39 282.36 2.45 -73.94 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -0.21 Total: 5.43 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: 2.63 Total: -11.15 kcal Atomic # 7 Polarization: -58.99 SS G_CDS: 0.30 Total: -58.69 kcal Atomic # 8 Polarization: -52.43 SS G_CDS: -2.15 Total: -54.58 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 1.88 Total: 45.05 kcal Total: -76.39 2.45 -73.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057471809.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.612 kcal (2) G-P(sol) polarization free energy of solvation -76.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds