Wall clock time and date at job start Sun Mar 29 2020 22:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35703 * 117.00014 * 2 1 4 4 C 1.39195 * 119.85482 * 0.02562 * 3 2 1 5 5 C 1.36522 * 120.38099 * 180.02562 * 4 3 2 6 6 C 1.39929 * 120.08090 * 0.02562 * 5 4 3 7 7 C 1.47109 * 120.14695 * 179.97438 * 6 5 4 8 8 O 1.21575 * 119.99949 * 180.02562 * 7 6 5 9 9 O 1.34808 * 119.99831 * 0.02562 * 7 6 5 10 10 C 1.34871 * 116.99837 * 180.02562 * 9 7 6 11 11 H 1.07996 * 120.00150 * 359.97438 * 10 9 7 12 12 C 1.38784 * 119.99829 * 180.02562 * 10 9 7 13 13 N 1.31442 * 119.99660 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 120.00224 * 359.97438 * 12 10 9 15 15 H 1.48503 * 109.46977 * 89.99939 * 14 12 10 16 16 H 1.48499 * 109.47292 * 210.00226 * 14 12 10 17 17 H 1.48508 * 109.46935 * 330.00362 * 14 12 10 18 18 C 1.40412 * 119.70835 * 359.97349 * 6 5 4 19 19 O 1.35648 * 120.18811 * 179.97438 * 18 6 5 20 20 C 1.42903 * 117.00336 * 180.02562 * 19 18 6 21 21 C 1.38462 * 119.62801 * 0.25622 * 18 6 5 22 22 H 1.09004 * 109.47157 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47369 * 299.99482 * 1 2 3 24 24 H 1.08997 * 109.47421 * 59.99802 * 1 2 3 25 25 H 1.08000 * 119.81078 * 0.02562 * 4 3 2 26 26 H 1.08008 * 119.95949 * 179.97438 * 5 4 3 27 27 H 0.96995 * 119.99266 * 179.97438 * 13 12 10 28 28 H 1.09002 * 109.47382 * 179.97438 * 20 19 18 29 29 H 1.09001 * 109.46938 * 59.99686 * 20 19 18 30 30 H 1.09004 * 109.46926 * 299.99807 * 20 19 18 31 31 H 1.07997 * 120.04189 * 179.72776 * 21 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 1.2840 2.3746 0.0005 5 6 1.8926 3.5966 0.0000 6 6 3.2892 3.6847 -0.0016 7 6 3.9465 5.0007 -0.0027 8 8 5.1600 5.0741 -0.0046 9 8 3.2032 6.1254 -0.0017 10 6 3.8681 7.2988 -0.0034 11 1 4.9481 7.3075 -0.0050 12 6 3.1646 8.4951 -0.0019 13 7 3.8126 9.6386 -0.0040 14 14 1.2966 8.4801 0.0017 15 1 0.8044 8.4759 1.4028 16 1 0.7905 9.6886 -0.6972 17 1 0.8100 7.2636 -0.6975 18 6 4.0604 2.5113 -0.0021 19 8 5.4148 2.5853 -0.0042 20 6 6.1322 1.3494 -0.0052 21 6 3.4305 1.2782 -0.0064 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 0.2059 2.3118 0.0014 26 1 1.2955 4.4966 0.0000 27 1 3.3208 10.4746 -0.0033 28 1 7.2034 1.5509 -0.0073 29 1 5.8687 0.7771 -0.8947 30 1 5.8715 0.7773 0.8853 31 1 4.0172 0.3715 -0.0113 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060572042.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:59:46 Heat of formation + Delta-G solvation = -117.906137 kcal Electronic energy + Delta-G solvation = -18218.844368 eV Core-core repulsion = 15046.325235 eV Total energy + Delta-G solvation = -3172.519133 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.53935 -39.14715 -38.57308 -36.34143 -35.06805 -32.24313 -30.92459 -29.99284 -27.59589 -27.19944 -25.42545 -23.10881 -21.93650 -20.15005 -18.67326 -17.86550 -17.11973 -16.57618 -16.12607 -16.00668 -15.48750 -15.21917 -14.73981 -14.45196 -14.22717 -13.85888 -13.02879 -12.75357 -12.62721 -12.47771 -12.28276 -11.92945 -11.61190 -11.40363 -11.18226 -10.97240 -10.63159 -10.40854 -10.29596 -9.63107 -9.00531 -8.61606 -8.58284 -7.97010 -6.31254 -4.02232 1.14234 1.49935 3.03645 3.20139 3.26549 3.36811 3.40690 3.45776 4.21200 4.24503 4.29973 4.74661 4.95197 4.97398 5.01950 5.08052 5.20474 5.23628 5.26501 5.33538 5.50732 5.60442 5.63408 5.90069 6.26055 6.42914 6.60257 6.69039 7.20976 7.53864 7.83521 8.11673 8.75547 9.08032 9.80307 10.77567 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.023265 B = 0.006787 C = 0.005274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.210258 B = 4124.760717 C = 5307.523489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.316 6.316 3 C 0.179 3.821 4 C -0.255 4.255 5 C 0.002 3.998 6 C -0.163 4.163 7 C 0.456 3.544 8 O -0.519 6.519 9 O -0.253 6.253 10 C -0.370 4.370 11 H 0.110 0.890 12 C 0.063 3.937 13 N -0.876 5.876 14 Si 0.903 3.097 15 H -0.273 1.273 16 H -0.282 1.282 17 H -0.260 1.260 18 C 0.215 3.785 19 O -0.271 6.271 20 C 0.020 3.980 21 C -0.258 4.258 22 H 0.098 0.902 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.132 0.868 26 H 0.145 0.855 27 H 0.279 0.721 28 H 0.101 0.899 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.068 -19.138 -0.005 20.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.229 6.229 3 C 0.133 3.867 4 C -0.274 4.274 5 C -0.017 4.017 6 C -0.165 4.165 7 C 0.303 3.697 8 O -0.414 6.414 9 O -0.162 6.162 10 C -0.446 4.446 11 H 0.127 0.873 12 C -0.140 4.140 13 N -0.515 5.515 14 Si 0.729 3.271 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.184 1.184 18 C 0.166 3.834 19 O -0.182 6.182 20 C -0.075 4.075 21 C -0.277 4.277 22 H 0.117 0.883 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.150 0.850 26 H 0.163 0.837 27 H 0.089 0.911 28 H 0.120 0.880 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -6.542 -18.900 -0.011 20.000 hybrid contribution -1.023 0.035 0.018 1.024 sum -7.564 -18.865 0.007 20.325 Atomic orbital electron populations 1.23094 0.78105 1.03823 1.01851 1.85989 1.21675 1.27153 1.88095 1.18838 0.91458 0.84053 0.92336 1.20819 1.00239 0.91895 1.14460 1.20910 0.92655 0.98014 0.90091 1.18683 0.92675 0.90059 1.15115 1.20106 0.85813 0.84295 0.79490 1.90725 1.14569 1.87257 1.48818 1.83541 1.40426 1.14425 1.77825 1.20674 0.94222 0.79000 1.50716 0.87267 1.24537 1.00054 0.93501 0.95932 1.69609 1.36677 0.97273 1.47973 0.86245 0.83820 0.78186 0.78851 1.19873 1.20801 1.18383 1.18653 0.83145 0.91537 0.90020 1.86476 1.14127 1.31214 1.86332 1.23164 0.97425 0.85861 1.01079 1.20214 0.92526 0.97094 1.17905 0.88316 0.92307 0.92314 0.84975 0.83684 0.91115 0.88024 0.92663 0.92656 0.84201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.80 101.05 0.99 1.19 16 2 O -0.32 -3.75 10.48 -18.81 -0.20 -3.94 16 3 C 0.18 2.49 6.69 -39.05 -0.26 2.23 16 4 C -0.26 -3.55 8.96 -39.85 -0.36 -3.90 16 5 C 0.00 0.03 9.55 -39.57 -0.38 -0.35 16 6 C -0.16 -3.35 5.89 -104.85 -0.62 -3.97 16 7 C 0.46 11.80 7.82 34.33 0.27 12.06 16 8 O -0.52 -14.90 14.40 -26.66 -0.38 -15.29 16 9 O -0.25 -6.95 7.81 -21.90 -0.17 -7.12 16 10 C -0.37 -11.33 10.11 30.93 0.31 -11.02 16 11 H 0.11 3.68 7.09 -52.49 -0.37 3.31 16 12 C 0.06 1.83 5.49 -17.52 -0.10 1.74 16 13 N -0.88 -26.36 13.96 55.49 0.77 -25.59 16 14 Si 0.90 21.56 28.62 -169.99 -4.86 16.69 16 15 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.26 -5.96 7.11 56.52 0.40 -5.56 16 18 C 0.21 3.90 6.70 -38.68 -0.26 3.64 16 19 O -0.27 -5.04 8.57 -40.55 -0.35 -5.39 16 20 C 0.02 0.24 9.81 101.05 0.99 1.23 16 21 C -0.26 -3.80 8.97 -39.32 -0.35 -4.15 16 22 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.06 0.41 7.65 -51.93 -0.40 0.01 16 24 H 0.06 0.41 7.65 -51.93 -0.40 0.01 16 25 H 0.13 1.42 6.26 -52.49 -0.33 1.09 16 26 H 0.15 2.45 7.60 -52.48 -0.40 2.05 16 27 H 0.28 7.65 8.31 -40.82 -0.34 7.31 16 28 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.05 0.56 7.65 -51.93 -0.40 0.16 16 30 H 0.05 0.56 7.68 -51.93 -0.40 0.16 16 31 H 0.14 1.70 6.31 -52.49 -0.33 1.36 16 LS Contribution 277.43 15.07 4.18 4.18 Total: -1.00 -35.35 277.43 -3.77 -39.12 By element: Atomic # 1 Polarization: 1.61 SS G_CDS: -3.00 Total: -1.39 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: 0.24 Total: -1.28 kcal Atomic # 7 Polarization: -26.36 SS G_CDS: 0.77 Total: -25.59 kcal Atomic # 8 Polarization: -30.64 SS G_CDS: -1.10 Total: -31.74 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.86 Total: 16.69 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -35.35 -3.77 -39.12 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060572042.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.785 kcal (2) G-P(sol) polarization free energy of solvation -35.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds