Wall clock time and date at job start Sun Mar 29 2020 22:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35703 * 117.00014 * 2 1 4 4 C 1.39195 * 119.85482 * 0.02562 * 3 2 1 5 5 C 1.36522 * 120.38099 * 180.02562 * 4 3 2 6 6 C 1.39929 * 120.08090 * 0.02562 * 5 4 3 7 7 C 1.47109 * 120.14695 * 179.97438 * 6 5 4 8 8 O 1.21575 * 119.99949 * 180.02562 * 7 6 5 9 9 O 1.34808 * 119.99831 * 0.02562 * 7 6 5 10 10 C 1.34871 * 116.99837 * 180.02562 * 9 7 6 11 11 H 1.07996 * 120.00150 * 359.97438 * 10 9 7 12 12 C 1.38784 * 119.99829 * 180.02562 * 10 9 7 13 13 N 1.31442 * 119.99660 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 120.00224 * 359.97438 * 12 10 9 15 15 H 1.48503 * 109.46977 * 89.99939 * 14 12 10 16 16 H 1.48499 * 109.47292 * 210.00226 * 14 12 10 17 17 H 1.48508 * 109.46935 * 330.00362 * 14 12 10 18 18 C 1.40412 * 119.70835 * 359.97349 * 6 5 4 19 19 O 1.35648 * 120.18811 * 179.97438 * 18 6 5 20 20 C 1.42903 * 117.00336 * 180.02562 * 19 18 6 21 21 C 1.38462 * 119.62801 * 0.25622 * 18 6 5 22 22 H 1.09004 * 109.47157 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47369 * 299.99482 * 1 2 3 24 24 H 1.08997 * 109.47421 * 59.99802 * 1 2 3 25 25 H 1.08000 * 119.81078 * 0.02562 * 4 3 2 26 26 H 1.08008 * 119.95949 * 179.97438 * 5 4 3 27 27 H 0.96995 * 119.99266 * 179.97438 * 13 12 10 28 28 H 1.09002 * 109.47382 * 179.97438 * 20 19 18 29 29 H 1.09001 * 109.46938 * 59.99686 * 20 19 18 30 30 H 1.09004 * 109.46926 * 299.99807 * 20 19 18 31 31 H 1.07997 * 120.04189 * 179.72776 * 21 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 1.2840 2.3746 0.0005 5 6 1.8926 3.5966 0.0000 6 6 3.2892 3.6847 -0.0016 7 6 3.9465 5.0007 -0.0027 8 8 5.1600 5.0741 -0.0046 9 8 3.2032 6.1254 -0.0017 10 6 3.8681 7.2988 -0.0034 11 1 4.9481 7.3075 -0.0050 12 6 3.1646 8.4951 -0.0019 13 7 3.8126 9.6386 -0.0040 14 14 1.2966 8.4801 0.0017 15 1 0.8044 8.4759 1.4028 16 1 0.7905 9.6886 -0.6972 17 1 0.8100 7.2636 -0.6975 18 6 4.0604 2.5113 -0.0021 19 8 5.4148 2.5853 -0.0042 20 6 6.1322 1.3494 -0.0052 21 6 3.4305 1.2782 -0.0064 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 0.2059 2.3118 0.0014 26 1 1.2955 4.4966 0.0000 27 1 3.3208 10.4746 -0.0033 28 1 7.2034 1.5509 -0.0073 29 1 5.8687 0.7771 -0.8947 30 1 5.8715 0.7773 0.8853 31 1 4.0172 0.3715 -0.0113 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060572042.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:59:46 Heat of formation + Delta-G solvation = -142.929585 kcal Electronic energy + Delta-G solvation = -18219.929466 eV Core-core repulsion = 15046.325235 eV Total energy + Delta-G solvation = -3173.604231 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.83747 -40.75250 -39.98563 -37.60055 -37.14528 -34.47994 -32.15084 -31.25637 -28.63470 -28.13722 -27.38013 -24.58087 -23.16685 -21.84245 -20.16002 -19.73747 -18.83943 -17.77176 -17.35195 -17.09983 -17.01722 -16.56845 -16.32485 -16.01430 -15.73315 -15.36618 -14.54944 -14.30277 -14.04132 -13.72096 -13.64395 -13.18897 -13.17957 -12.54327 -12.46533 -12.34590 -12.25150 -11.99387 -11.79536 -11.67195 -11.05774 -10.81447 -9.74785 -9.25912 -8.53222 -6.37722 -0.21243 0.29643 1.33308 1.37754 1.55370 1.75285 2.07270 2.28065 2.33626 2.49247 2.66209 2.99447 3.65145 3.95069 4.04358 4.13135 4.21364 4.37166 4.42549 4.45083 4.47157 4.59838 4.70589 4.82238 4.95878 5.14709 5.22049 5.40182 5.50824 5.91073 6.22030 6.38473 6.56582 6.83459 7.63303 8.60266 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.023265 B = 0.006787 C = 0.005274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.210258 B = 4124.760717 C = 5307.523489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.317 6.317 3 C 0.201 3.799 4 C -0.242 4.242 5 C 0.005 3.995 6 C -0.214 4.214 7 C 0.456 3.544 8 O -0.563 6.563 9 O -0.254 6.254 10 C -0.406 4.406 11 H 0.052 0.948 12 C 0.013 3.987 13 N -0.919 5.919 14 Si 0.984 3.016 15 H -0.257 1.257 16 H -0.264 1.264 17 H -0.244 1.244 18 C 0.211 3.789 19 O -0.315 6.315 20 C 0.010 3.990 21 C -0.255 4.255 22 H 0.126 0.874 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.173 0.827 26 H 0.145 0.855 27 H 0.289 0.711 28 H 0.111 0.889 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.785 -22.248 -0.007 24.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.229 6.229 3 C 0.154 3.846 4 C -0.261 4.261 5 C -0.014 4.014 6 C -0.216 4.216 7 C 0.305 3.695 8 O -0.459 6.459 9 O -0.164 6.164 10 C -0.482 4.482 11 H 0.070 0.930 12 C -0.186 4.186 13 N -0.559 5.559 14 Si 0.802 3.198 15 H -0.182 1.182 16 H -0.188 1.188 17 H -0.168 1.168 18 C 0.162 3.838 19 O -0.226 6.226 20 C -0.084 4.084 21 C -0.274 4.274 22 H 0.144 0.856 23 H 0.090 0.910 24 H 0.089 0.911 25 H 0.190 0.810 26 H 0.163 0.837 27 H 0.099 0.901 28 H 0.129 0.871 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -10.247 -22.042 -0.012 24.308 hybrid contribution 0.185 0.704 0.021 0.729 sum -10.061 -21.338 0.009 23.591 Atomic orbital electron populations 1.23536 0.75465 1.06225 1.03059 1.86025 1.24274 1.25621 1.86997 1.18957 0.91316 0.84998 0.89361 1.21126 1.02174 0.90302 1.12469 1.20948 0.91014 0.99630 0.89780 1.18589 0.94495 0.87593 1.20891 1.21323 0.85763 0.85623 0.76788 1.90678 1.16670 1.88013 1.50535 1.83540 1.39850 1.13925 1.79078 1.20324 0.92240 0.81312 1.54279 0.92991 1.25627 1.06667 0.92149 0.94162 1.69713 1.39570 0.98325 1.48332 0.85085 0.75272 0.79399 0.79999 1.18175 1.18844 1.16753 1.18798 0.83182 0.91970 0.89803 1.86415 1.14884 1.34988 1.86362 1.23520 0.97449 0.84285 1.03141 1.20399 0.93429 0.96479 1.17141 0.85590 0.91036 0.91062 0.80970 0.83720 0.90067 0.87081 0.90484 0.90478 0.81412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.80 113.37 1.11 1.22 16 2 O -0.32 -5.85 10.48 -90.23 -0.95 -6.79 16 3 C 0.20 4.75 6.69 22.61 0.15 4.90 16 4 C -0.24 -5.75 8.96 22.10 0.20 -5.55 16 5 C 0.00 0.15 9.55 22.28 0.21 0.37 16 6 C -0.21 -8.92 5.89 -20.01 -0.12 -9.04 16 7 C 0.46 25.00 7.82 70.15 0.55 25.55 16 8 O -0.56 -34.93 14.40 26.60 0.38 -34.55 16 9 O -0.25 -14.64 7.81 10.39 0.08 -14.56 16 10 C -0.41 -26.49 10.11 67.95 0.69 -25.81 16 11 H 0.05 3.87 7.09 -2.91 -0.02 3.85 16 12 C 0.01 0.79 5.49 84.88 0.47 1.26 16 13 N -0.92 -57.49 13.96 21.63 0.30 -57.19 16 14 Si 0.98 44.37 28.62 68.60 1.96 46.34 16 15 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 16 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 17 H -0.24 -10.32 7.11 99.48 0.71 -9.62 16 18 C 0.21 7.61 6.70 22.85 0.15 7.77 16 19 O -0.31 -11.99 8.57 -68.68 -0.59 -12.58 16 20 C 0.01 0.23 9.81 113.37 1.11 1.34 16 21 C -0.26 -6.79 8.97 22.44 0.20 -6.59 16 22 H 0.13 0.60 8.14 -2.38 -0.02 0.58 16 23 H 0.07 0.57 7.65 -2.39 -0.02 0.56 16 24 H 0.07 0.57 7.65 -2.39 -0.02 0.56 16 25 H 0.17 2.68 6.26 -2.91 -0.02 2.66 16 26 H 0.15 4.66 7.60 -2.91 -0.02 4.64 16 27 H 0.29 16.21 8.31 -92.71 -0.77 15.44 16 28 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.08 1.41 7.65 -2.39 -0.02 1.39 16 30 H 0.08 1.41 7.68 -2.38 -0.02 1.39 16 31 H 0.17 3.42 6.31 -2.91 -0.02 3.40 16 Total: -1.00 -84.44 277.43 7.08 -77.36 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: 1.16 Total: 6.57 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: 4.72 Total: -4.59 kcal Atomic # 7 Polarization: -57.49 SS G_CDS: 0.30 Total: -57.19 kcal Atomic # 8 Polarization: -67.41 SS G_CDS: -1.07 Total: -68.48 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 1.96 Total: 46.34 kcal Total: -84.44 7.08 -77.36 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060572042.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.573 kcal (2) G-P(sol) polarization free energy of solvation -84.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds