Wall clock time and date at job start Sun Mar 29 2020 22:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35902 * 116.99692 * 2 1 4 4 C 1.38794 * 120.02552 * 0.02562 * 3 2 1 5 5 C 1.38159 * 120.04958 * 179.97438 * 4 3 2 6 6 C 1.38195 * 120.10742 * 359.73842 * 5 4 3 7 7 C 1.38752 * 120.05766 * 0.51411 * 6 5 4 8 8 O 1.35897 * 120.02843 * 179.76753 * 7 6 5 9 9 C 1.42906 * 117.00058 * 359.72163 * 8 7 6 10 10 C 1.50693 * 109.46955 * 179.97438 * 9 8 7 11 11 O 1.21213 * 120.00493 * 0.02562 * 10 9 8 12 12 O 1.34310 * 119.99805 * 179.72720 * 10 9 8 13 13 C 1.34922 * 117.00349 * 180.27868 * 12 10 9 14 14 H 1.08003 * 119.99659 * 359.97438 * 13 12 10 15 15 C 1.38755 * 120.00272 * 179.97438 * 13 12 10 16 16 N 1.31441 * 120.00098 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99825 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47079 * 60.00337 * 17 15 13 19 19 H 1.48508 * 109.46903 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47336 * 300.00039 * 17 15 13 21 21 C 1.38612 * 120.02557 * 180.02562 * 3 2 1 22 22 H 1.09008 * 109.46892 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47087 * 299.99990 * 1 2 3 24 24 H 1.08995 * 109.47451 * 60.00564 * 1 2 3 25 25 H 1.07994 * 119.97452 * 359.97438 * 4 3 2 26 26 H 1.07993 * 119.94260 * 180.02562 * 5 4 3 27 27 H 1.08005 * 119.96764 * 180.26092 * 6 5 4 28 28 H 1.09004 * 109.46646 * 59.99853 * 9 8 7 29 29 H 1.08994 * 109.46983 * 300.00310 * 9 8 7 30 30 H 0.97002 * 120.00099 * 179.97438 * 16 15 13 31 31 H 1.08002 * 120.04994 * 0.04189 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2905 2.3752 0.0005 5 6 1.9171 3.6066 0.0011 6 6 3.2970 3.6821 0.0065 7 6 4.0566 2.5210 0.0007 8 8 5.4135 2.5961 0.0013 9 6 5.9910 3.9032 0.0019 10 6 7.4936 3.7885 0.0032 11 8 8.0181 2.6957 0.0030 12 8 8.2517 4.8972 -0.0017 13 6 9.5898 4.7243 -0.0061 14 1 10.0055 3.7275 -0.0052 15 6 10.4318 5.8271 -0.0117 16 7 9.9260 7.0403 -0.0122 17 14 12.2844 5.5877 -0.0171 18 1 12.6817 4.8269 -1.2289 19 1 12.9548 6.9128 -0.0221 20 1 12.6896 4.8331 1.1961 21 6 3.4301 1.2842 -0.0005 22 1 -0.3633 -1.0278 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 0.2120 2.3187 0.0005 26 1 1.3276 4.5114 0.0019 27 1 3.7845 4.6459 0.0112 28 1 5.6674 4.4429 0.8919 29 1 5.6682 4.4434 -0.8880 30 1 10.5146 7.8113 -0.0158 31 1 4.0196 0.3792 -0.0016 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062448456.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:59:54 Heat of formation + Delta-G solvation = -121.690915 kcal Electronic energy + Delta-G solvation = -17399.928974 eV Core-core repulsion = 14227.245721 eV Total energy + Delta-G solvation = -3172.683253 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.088 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.47588 -39.38175 -38.56704 -36.42633 -35.06717 -32.21368 -31.14941 -29.64059 -28.46508 -27.28822 -25.14470 -22.82762 -21.97575 -20.24629 -18.75475 -17.77797 -16.95559 -16.57981 -16.14052 -16.10914 -15.80351 -15.65657 -14.90986 -14.37964 -14.19807 -13.99330 -13.63575 -12.99021 -12.65659 -12.42226 -12.14804 -11.70441 -11.59657 -11.58458 -11.16410 -10.85332 -10.74356 -10.48588 -10.39385 -9.88970 -9.07197 -8.62748 -8.53102 -8.15249 -6.46372 -4.14959 1.33320 1.38682 2.67446 3.09397 3.16829 3.20736 3.39417 3.42198 3.71629 4.04680 4.59373 4.68640 4.85077 4.91464 4.96330 5.05209 5.08890 5.13866 5.23609 5.38538 5.48529 5.50759 5.89139 6.12715 6.19726 6.37567 6.44358 6.57418 7.22881 7.33809 7.49148 7.88711 8.62756 9.01934 9.74273 10.71297 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.066454 B = 0.003618 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.244047 B = 7736.925719 C = 8137.706135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.316 6.316 3 C 0.162 3.838 4 C -0.251 4.251 5 C -0.040 4.040 6 C -0.246 4.246 7 C 0.177 3.823 8 O -0.287 6.287 9 C 0.079 3.921 10 C 0.398 3.602 11 O -0.534 6.534 12 O -0.209 6.209 13 C -0.383 4.383 14 H 0.098 0.902 15 C 0.043 3.957 16 N -0.865 5.865 17 Si 0.947 3.053 18 H -0.269 1.269 19 H -0.278 1.278 20 H -0.269 1.269 21 C -0.187 4.187 22 H 0.099 0.901 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.127 0.873 26 H 0.128 0.872 27 H 0.135 0.865 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.271 0.729 31 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.241 -6.034 0.017 19.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.229 6.229 3 C 0.117 3.883 4 C -0.270 4.270 5 C -0.059 4.059 6 C -0.265 4.265 7 C 0.130 3.870 8 O -0.199 6.199 9 C 0.003 3.997 10 C 0.242 3.758 11 O -0.429 6.429 12 O -0.117 6.117 13 C -0.459 4.459 14 H 0.115 0.885 15 C -0.161 4.161 16 N -0.502 5.502 17 Si 0.772 3.228 18 H -0.194 1.194 19 H -0.203 1.203 20 H -0.194 1.194 21 C -0.207 4.207 22 H 0.117 0.883 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.145 0.855 26 H 0.146 0.854 27 H 0.152 0.848 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.081 0.919 31 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -17.776 -6.423 0.016 18.901 hybrid contribution 0.492 0.350 -0.002 0.603 sum -17.284 -6.073 0.015 18.320 Atomic orbital electron populations 1.23054 0.78316 1.03837 1.01423 1.86065 1.21380 1.26881 1.88549 1.18524 0.91258 0.84136 0.94427 1.21079 0.99856 0.92242 1.13784 1.20684 0.93680 0.97049 0.94439 1.21300 0.94941 0.97946 1.12299 1.18633 0.82393 0.93297 0.92627 1.86118 1.16511 1.29760 1.87494 1.21818 0.90649 0.83048 1.04148 1.22403 0.88806 0.84468 0.80076 1.90608 1.74400 1.28594 1.49342 1.83829 1.20199 1.31784 1.75863 1.21220 0.76614 0.95240 1.52852 0.88472 1.25354 1.00625 0.94099 0.96005 1.69980 1.36237 0.97759 1.46187 0.85687 0.79965 0.77733 0.79465 1.19375 1.20314 1.19380 1.19419 0.91374 0.97024 1.12839 0.88293 0.92594 0.92588 0.85546 0.85440 0.84755 0.88730 0.88709 0.91889 0.84222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.72 10.50 -19.43 -0.20 -3.93 16 3 C 0.16 2.11 6.68 -39.24 -0.26 1.85 16 4 C -0.25 -2.77 9.04 -39.40 -0.36 -3.13 16 5 C -0.04 -0.45 10.04 -39.63 -0.40 -0.85 16 6 C -0.25 -3.28 9.04 -39.41 -0.36 -3.64 16 7 C 0.18 2.82 6.68 -39.24 -0.26 2.56 16 8 O -0.29 -5.48 9.67 -39.33 -0.38 -5.86 16 9 C 0.08 1.48 5.33 36.00 0.19 1.68 16 10 C 0.40 10.01 7.98 36.00 0.29 10.30 16 11 O -0.53 -15.05 15.74 -25.79 -0.41 -15.46 16 12 O -0.21 -5.95 9.75 -20.71 -0.20 -6.15 16 13 C -0.38 -11.34 9.65 30.92 0.30 -11.04 16 14 H 0.10 2.89 6.86 -52.48 -0.36 2.54 16 15 C 0.04 1.22 5.49 -17.53 -0.10 1.12 16 16 N -0.86 -25.04 13.67 55.48 0.76 -24.28 16 17 Si 0.95 21.21 29.55 -169.99 -5.02 16.18 16 18 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 19 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 20 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 21 C -0.19 -2.82 9.93 -39.29 -0.39 -3.21 16 22 H 0.10 0.49 8.14 -51.92 -0.42 0.07 16 23 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 24 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 25 H 0.13 1.04 6.29 -52.49 -0.33 0.71 16 26 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 27 H 0.13 1.61 6.29 -52.48 -0.33 1.28 16 28 H 0.09 1.52 7.65 -51.93 -0.40 1.12 16 29 H 0.10 1.53 7.67 -51.93 -0.40 1.13 16 30 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 31 H 0.14 2.10 8.06 -52.49 -0.42 1.67 16 LS Contribution 282.49 15.07 4.26 4.26 Total: -1.00 -34.47 282.49 -4.57 -39.03 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: -3.01 Total: -0.63 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: -0.35 Total: -3.17 kcal Atomic # 7 Polarization: -25.04 SS G_CDS: 0.76 Total: -24.28 kcal Atomic # 8 Polarization: -30.20 SS G_CDS: -1.19 Total: -31.39 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -34.47 -4.57 -39.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062448456.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.660 kcal (2) G-P(sol) polarization free energy of solvation -34.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds