Wall clock time and date at job start Sun Mar 29 2020 22:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35902 * 116.99692 * 2 1 4 4 C 1.38794 * 120.02552 * 0.02562 * 3 2 1 5 5 C 1.38159 * 120.04958 * 179.97438 * 4 3 2 6 6 C 1.38195 * 120.10742 * 359.73842 * 5 4 3 7 7 C 1.38752 * 120.05766 * 0.51411 * 6 5 4 8 8 O 1.35897 * 120.02843 * 179.76753 * 7 6 5 9 9 C 1.42906 * 117.00058 * 359.72163 * 8 7 6 10 10 C 1.50693 * 109.46955 * 179.97438 * 9 8 7 11 11 O 1.21213 * 120.00493 * 0.02562 * 10 9 8 12 12 O 1.34310 * 119.99805 * 179.72720 * 10 9 8 13 13 C 1.34922 * 117.00349 * 180.27868 * 12 10 9 14 14 H 1.08003 * 119.99659 * 359.97438 * 13 12 10 15 15 C 1.38755 * 120.00272 * 179.97438 * 13 12 10 16 16 N 1.31441 * 120.00098 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99825 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47079 * 60.00337 * 17 15 13 19 19 H 1.48508 * 109.46903 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47336 * 300.00039 * 17 15 13 21 21 C 1.38612 * 120.02557 * 180.02562 * 3 2 1 22 22 H 1.09008 * 109.46892 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47087 * 299.99990 * 1 2 3 24 24 H 1.08995 * 109.47451 * 60.00564 * 1 2 3 25 25 H 1.07994 * 119.97452 * 359.97438 * 4 3 2 26 26 H 1.07993 * 119.94260 * 180.02562 * 5 4 3 27 27 H 1.08005 * 119.96764 * 180.26092 * 6 5 4 28 28 H 1.09004 * 109.46646 * 59.99853 * 9 8 7 29 29 H 1.08994 * 109.46983 * 300.00310 * 9 8 7 30 30 H 0.97002 * 120.00099 * 179.97438 * 16 15 13 31 31 H 1.08002 * 120.04994 * 0.04189 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2905 2.3752 0.0005 5 6 1.9171 3.6066 0.0011 6 6 3.2970 3.6821 0.0065 7 6 4.0566 2.5210 0.0007 8 8 5.4135 2.5961 0.0013 9 6 5.9910 3.9032 0.0019 10 6 7.4936 3.7885 0.0032 11 8 8.0181 2.6957 0.0030 12 8 8.2517 4.8972 -0.0017 13 6 9.5898 4.7243 -0.0061 14 1 10.0055 3.7275 -0.0052 15 6 10.4318 5.8271 -0.0117 16 7 9.9260 7.0403 -0.0122 17 14 12.2844 5.5877 -0.0171 18 1 12.6817 4.8269 -1.2289 19 1 12.9548 6.9128 -0.0221 20 1 12.6896 4.8331 1.1961 21 6 3.4301 1.2842 -0.0005 22 1 -0.3633 -1.0278 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 0.2120 2.3187 0.0005 26 1 1.3276 4.5114 0.0019 27 1 3.7845 4.6459 0.0112 28 1 5.6674 4.4429 0.8919 29 1 5.6682 4.4434 -0.8880 30 1 10.5146 7.8113 -0.0158 31 1 4.0196 0.3792 -0.0016 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062448456.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:59:54 Heat of formation + Delta-G solvation = -144.624593 kcal Electronic energy + Delta-G solvation = -17400.923452 eV Core-core repulsion = 14227.245721 eV Total energy + Delta-G solvation = -3173.677732 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.64468 -41.00823 -39.97209 -37.63805 -37.02781 -34.37222 -32.19714 -30.74464 -29.83684 -28.08269 -27.16984 -23.87092 -23.20349 -21.91312 -20.05231 -19.72699 -18.69350 -17.66512 -17.63912 -17.12416 -17.10299 -16.66726 -16.35543 -16.21960 -15.99180 -15.36416 -14.58692 -14.36305 -13.79038 -13.73215 -13.63997 -13.16962 -13.06442 -12.62037 -12.53881 -12.34354 -12.17077 -12.09373 -11.80675 -11.70812 -11.12120 -10.74042 -9.57912 -9.15603 -8.58889 -6.39851 0.34427 0.38159 1.22985 1.25678 1.42415 1.55899 1.56359 2.16568 2.43868 2.72292 2.92214 3.00314 3.76382 3.89935 4.05813 4.11192 4.13830 4.17155 4.40628 4.44234 4.52952 4.54230 4.75255 4.85428 5.10809 5.21292 5.26167 5.43454 5.51459 5.76469 6.23275 6.42652 6.54740 6.85443 7.62493 8.61052 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.066454 B = 0.003618 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.244047 B = 7736.925719 C = 8137.706135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.336 6.336 3 C 0.159 3.841 4 C -0.239 4.239 5 C -0.033 4.033 6 C -0.251 4.251 7 C 0.149 3.851 8 O -0.320 6.320 9 C 0.094 3.906 10 C 0.394 3.606 11 O -0.572 6.572 12 O -0.231 6.231 13 C -0.427 4.427 14 H 0.082 0.918 15 C 0.001 3.999 16 N -0.897 5.897 17 Si 1.019 2.981 18 H -0.262 1.262 19 H -0.256 1.256 20 H -0.262 1.262 21 C -0.214 4.214 22 H 0.118 0.882 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.162 0.838 26 H 0.166 0.834 27 H 0.148 0.852 28 H 0.124 0.876 29 H 0.124 0.876 30 H 0.282 0.718 31 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.054 -5.092 0.014 20.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.250 6.250 3 C 0.113 3.887 4 C -0.258 4.258 5 C -0.051 4.051 6 C -0.269 4.269 7 C 0.103 3.897 8 O -0.234 6.234 9 C 0.019 3.981 10 C 0.241 3.759 11 O -0.470 6.470 12 O -0.139 6.139 13 C -0.502 4.502 14 H 0.100 0.900 15 C -0.200 4.200 16 N -0.534 5.534 17 Si 0.837 3.163 18 H -0.186 1.186 19 H -0.180 1.180 20 H -0.187 1.187 21 C -0.234 4.234 22 H 0.136 0.864 23 H 0.088 0.912 24 H 0.089 0.911 25 H 0.179 0.821 26 H 0.183 0.817 27 H 0.165 0.835 28 H 0.142 0.858 29 H 0.142 0.858 30 H 0.091 0.909 31 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -19.640 -5.481 0.014 20.390 hybrid contribution 0.824 -0.041 0.000 0.825 sum -18.816 -5.522 0.014 19.609 Atomic orbital electron populations 1.23423 0.75726 1.05753 1.02763 1.86049 1.24065 1.26588 1.88291 1.18615 0.90621 0.85465 0.94026 1.21499 1.01522 0.91283 1.11456 1.21144 0.92937 0.98589 0.92448 1.21523 0.96007 0.97345 1.12074 1.18848 0.81053 0.94666 0.95087 1.86042 1.18830 1.29797 1.88696 1.21791 0.85715 0.83787 1.06844 1.23699 0.91385 0.83227 0.77592 1.90568 1.75854 1.29841 1.50707 1.83841 1.20145 1.33253 1.76710 1.21423 0.77678 0.95380 1.55717 0.90046 1.26541 1.05797 0.93314 0.94331 1.70046 1.38601 0.98691 1.46045 0.84672 0.73016 0.78777 0.79805 1.18643 1.18002 1.18655 1.19510 0.92758 0.96440 1.14653 0.86365 0.91154 0.91147 0.82054 0.81672 0.83465 0.85796 0.85797 0.90869 0.85949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.31 16 2 O -0.34 -7.52 10.50 -92.44 -0.97 -8.49 16 3 C 0.16 3.94 6.68 22.49 0.15 4.09 16 4 C -0.24 -4.49 9.04 22.38 0.20 -4.28 16 5 C -0.03 -0.63 10.04 22.24 0.22 -0.40 16 6 C -0.25 -6.20 9.04 22.38 0.20 -5.99 16 7 C 0.15 4.76 6.68 22.49 0.15 4.91 16 8 O -0.32 -12.58 9.67 -73.34 -0.71 -13.29 16 9 C 0.09 3.52 5.33 71.23 0.38 3.90 16 10 C 0.39 20.51 7.98 71.23 0.57 21.08 16 11 O -0.57 -33.81 15.74 27.20 0.43 -33.38 16 12 O -0.23 -13.58 9.75 14.85 0.14 -13.43 16 13 C -0.43 -26.07 9.65 67.94 0.66 -25.41 16 14 H 0.08 5.09 6.86 -2.91 -0.02 5.07 16 15 C 0.00 0.07 5.49 84.87 0.47 0.54 16 16 N -0.90 -52.10 13.67 21.62 0.30 -51.81 16 17 Si 1.02 43.20 29.55 68.60 2.03 45.23 16 18 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 19 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 20 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 21 C -0.21 -6.63 9.93 22.46 0.22 -6.41 16 22 H 0.12 0.86 8.14 -2.38 -0.02 0.84 16 23 H 0.07 0.60 7.66 -2.39 -0.02 0.58 16 24 H 0.07 0.60 7.66 -2.39 -0.02 0.58 16 25 H 0.16 1.86 6.29 -2.91 -0.02 1.84 16 26 H 0.17 1.87 8.06 -2.91 -0.02 1.84 16 27 H 0.15 3.15 6.29 -2.91 -0.02 3.14 16 28 H 0.12 3.87 7.65 -2.38 -0.02 3.85 16 29 H 0.12 3.87 7.67 -2.39 -0.02 3.85 16 30 H 0.28 14.78 8.31 -92.71 -0.77 14.01 16 31 H 0.12 4.01 8.06 -2.91 -0.02 3.99 16 Total: -1.00 -78.26 282.49 6.70 -71.55 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: 1.15 Total: 10.32 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: 4.33 Total: -6.68 kcal Atomic # 7 Polarization: -52.10 SS G_CDS: 0.30 Total: -51.81 kcal Atomic # 8 Polarization: -67.50 SS G_CDS: -1.11 Total: -68.60 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -78.26 6.70 -71.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062448456.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.071 kcal (2) G-P(sol) polarization free energy of solvation -78.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds