Wall clock time and date at job start Sun Mar 29 2020 22:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47138 * 2 1 4 4 C 1.36658 * 120.00239 * 264.21255 * 3 2 1 5 5 H 1.07997 * 120.00053 * 142.46034 * 4 3 2 6 6 C 1.39147 * 119.99912 * 322.46389 * 4 3 2 7 7 N 1.31311 * 119.99622 * 337.83869 * 6 4 3 8 8 Si 1.86799 * 120.00226 * 157.84436 * 6 4 3 9 9 H 1.48504 * 109.47109 * 89.99551 * 8 6 4 10 10 H 1.48498 * 109.47017 * 209.99923 * 8 6 4 11 11 H 1.48500 * 109.46966 * 329.99938 * 8 6 4 12 12 C 1.34783 * 119.99875 * 84.21081 * 3 2 1 13 13 O 1.21800 * 119.99571 * 180.02562 * 12 3 2 14 14 C 1.41740 * 120.00203 * 0.02562 * 12 3 2 15 15 C 1.35432 * 120.00190 * 179.97438 * 14 12 3 16 16 C 1.46296 * 120.00239 * 179.97438 * 15 14 12 17 17 N 1.30886 * 125.55631 * 179.97438 * 16 15 14 18 18 C 1.30816 * 115.79810 * 180.02562 * 17 16 15 19 19 C 1.34161 * 115.80939 * 359.97438 * 18 17 16 20 20 S 1.71050 * 109.16845 * 359.73192 * 19 18 17 21 21 H 1.09000 * 109.47346 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47383 * 300.00346 * 1 2 3 23 23 H 1.09006 * 109.46840 * 60.00057 * 1 2 3 24 24 H 1.09001 * 109.47181 * 240.00015 * 2 1 3 25 25 H 1.09006 * 109.46840 * 119.99942 * 2 1 3 26 26 H 0.97006 * 119.99646 * 180.02562 * 7 6 4 27 27 H 1.08001 * 119.99591 * 359.97438 * 14 12 3 28 28 H 1.08004 * 119.99822 * 0.27150 * 15 14 12 29 29 H 1.08004 * 122.09432 * 180.02562 * 18 17 16 30 30 H 1.08012 * 125.41640 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3586 1.9857 -1.1774 5 1 2.1374 3.0315 -1.3312 6 6 2.9901 1.2536 -2.1782 7 7 3.6433 0.1554 -1.8755 8 14 2.9089 1.8333 -3.9521 9 1 4.0558 2.7343 -4.2315 10 1 2.9690 0.6594 -4.8596 11 1 1.6372 2.5669 -4.1754 12 6 2.1320 2.0558 1.1613 13 8 2.5375 3.2043 1.1612 14 6 1.7795 1.4287 2.3826 15 6 1.8942 2.1064 3.5496 16 6 1.5299 1.4594 4.8101 17 7 1.5980 2.0098 5.9957 18 6 1.2238 1.2547 6.9962 19 6 0.8194 0.0167 6.6744 20 16 0.9208 -0.1843 4.9788 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8901 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8901 26 1 4.0839 -0.3547 -2.5732 27 1 1.4195 0.4105 2.3826 28 1 2.2500 3.1261 3.5491 29 1 1.2387 1.6063 8.0173 30 1 0.4789 -0.7324 7.3742 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068232094.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:37 Heat of formation + Delta-G solvation = 15.981758 kcal Electronic energy + Delta-G solvation = -15771.093959 eV Core-core repulsion = 13079.426264 eV Total energy + Delta-G solvation = -2691.667696 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 252.067 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.78834 -40.41944 -37.07742 -34.95603 -33.97491 -31.22871 -30.81083 -27.96435 -26.27517 -24.24086 -23.34719 -20.98060 -20.36236 -18.79392 -18.66766 -18.03255 -17.02952 -16.43596 -16.12341 -15.72210 -15.41337 -15.01305 -14.59396 -14.48522 -14.19531 -13.60050 -13.57269 -13.18657 -12.85164 -12.66533 -12.42681 -12.29122 -12.08118 -11.83710 -11.46264 -10.93031 -10.82491 -10.50402 -10.49239 -9.54808 -9.27022 -8.41618 -6.06191 -0.92536 0.28048 0.63564 0.79476 1.41543 1.43398 1.56415 1.94959 2.27898 2.55441 2.89368 3.07395 3.38221 3.98609 4.04279 4.29279 4.36159 4.44374 4.52229 4.60634 4.80742 4.92501 5.02873 5.18065 5.27229 5.29513 5.43760 5.54009 6.18002 6.50866 6.69148 7.14059 7.38155 8.02677 8.61344 Molecular weight = 252.07amu Principal moments of inertia in cm(-1) A = 0.044784 B = 0.005108 C = 0.004803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.071938 B = 5480.688733 C = 5828.626493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.092 3.908 3 N -0.431 5.431 4 C -0.345 4.345 5 H 0.066 0.934 6 C 0.009 3.991 7 N -0.878 5.878 8 Si 0.984 3.016 9 H -0.278 1.278 10 H -0.263 1.263 11 H -0.265 1.265 12 C 0.459 3.541 13 O -0.640 6.640 14 C -0.152 4.152 15 C -0.023 4.023 16 C 0.038 3.962 17 N -0.479 5.479 18 C 0.014 3.986 19 C -0.270 4.270 20 S 0.201 5.799 21 H 0.091 0.909 22 H 0.053 0.947 23 H 0.044 0.956 24 H 0.087 0.913 25 H 0.070 0.930 26 H 0.278 0.722 27 H 0.146 0.854 28 H 0.129 0.871 29 H 0.200 0.800 30 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.945 -8.355 11.713 16.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.030 4.030 3 N -0.147 5.147 4 C -0.473 4.473 5 H 0.084 0.916 6 C -0.195 4.195 7 N -0.514 5.514 8 Si 0.806 3.194 9 H -0.204 1.204 10 H -0.188 1.188 11 H -0.189 1.189 12 C 0.253 3.747 13 O -0.531 6.531 14 C -0.179 4.179 15 C -0.047 4.047 16 C -0.231 4.231 17 N -0.195 5.195 18 C -0.141 4.141 19 C -0.410 4.410 20 S 0.457 5.543 21 H 0.110 0.890 22 H 0.072 0.928 23 H 0.063 0.937 24 H 0.105 0.895 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.164 0.836 28 H 0.146 0.854 29 H 0.217 0.783 30 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -7.699 -8.300 10.973 15.767 hybrid contribution 0.391 0.843 0.086 0.933 sum -7.308 -7.457 11.059 15.209 Atomic orbital electron populations 1.22155 0.94696 1.02989 1.01575 1.21760 0.94493 0.83127 1.03661 1.43751 1.53168 1.12990 1.04784 1.19424 1.39071 0.96805 0.92026 0.91579 1.26198 0.92777 0.96345 1.04198 1.69971 1.28314 1.17613 1.35492 0.85109 0.78951 0.78372 0.76951 1.20422 1.18755 1.18944 1.17605 0.83976 0.87817 0.85345 1.90625 1.53925 1.20636 1.87871 1.22204 1.02378 1.01138 0.92149 1.21207 0.96510 0.99325 0.87691 1.26018 1.06183 0.95943 0.94953 1.67048 1.17520 1.36308 0.98583 1.22172 1.01155 0.90626 1.00149 1.27065 1.09882 1.03312 1.00727 1.83756 1.56159 1.12533 1.01844 0.89004 0.92776 0.93702 0.89472 0.91196 0.91177 0.83613 0.85352 0.78337 0.76565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.14 10.05 71.98 0.72 -4.42 16 2 C 0.09 3.85 5.28 86.38 0.46 4.31 16 3 N -0.43 -22.28 2.52 -645.48 -1.63 -23.91 16 4 C -0.34 -19.55 8.88 84.16 0.75 -18.81 16 5 H 0.07 4.02 7.77 -2.91 -0.02 4.00 16 6 C 0.01 0.49 4.87 84.99 0.41 0.91 16 7 N -0.88 -46.28 11.60 21.70 0.25 -46.03 16 8 Si 0.98 41.26 29.61 68.60 2.03 43.29 16 9 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 10 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 11 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 12 C 0.46 23.75 7.36 85.11 0.63 24.37 16 13 O -0.64 -38.66 15.98 -4.67 -0.07 -38.74 16 14 C -0.15 -6.06 8.11 22.49 0.18 -5.87 16 15 C -0.02 -0.85 9.70 23.72 0.23 -0.62 16 16 C 0.04 1.19 7.41 86.93 0.64 1.84 16 17 N -0.48 -14.62 10.67 -190.97 -2.04 -16.66 16 18 C 0.01 0.31 11.24 83.91 0.94 1.25 16 19 C -0.27 -4.65 11.08 66.89 0.74 -3.91 16 20 S 0.20 4.39 22.05 -56.49 -1.25 3.14 16 21 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 22 H 0.05 1.68 7.48 -2.39 -0.02 1.66 16 23 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 24 H 0.09 3.99 5.63 -2.39 -0.01 3.98 16 25 H 0.07 2.59 6.42 -2.38 -0.02 2.57 16 26 H 0.28 13.53 8.31 -92.70 -0.77 12.76 16 27 H 0.15 4.78 5.06 -2.91 -0.01 4.77 16 28 H 0.13 5.40 7.46 -2.91 -0.02 5.38 16 29 H 0.20 2.98 8.06 -2.91 -0.02 2.96 16 30 H 0.22 1.90 8.06 -2.90 -0.02 1.88 16 Total: -1.00 -71.02 278.26 4.16 -66.86 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: 1.16 Total: 13.00 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: 5.71 Total: -0.96 kcal Atomic # 7 Polarization: -83.19 SS G_CDS: -3.41 Total: -86.60 kcal Atomic # 8 Polarization: -38.66 SS G_CDS: -0.07 Total: -38.74 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.29 kcal Atomic # 16 Polarization: 4.39 SS G_CDS: -1.25 Total: 3.14 kcal Total: -71.02 4.16 -66.86 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068232094.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.838 kcal (2) G-P(sol) polarization free energy of solvation -71.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds