Wall clock time and date at job start Sun Mar 29 2020 22:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99787 * 2 1 4 4 H 1.48502 * 109.47183 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.46942 * 120.00090 * 3 2 1 6 6 H 1.48498 * 109.47042 * 239.99869 * 3 2 1 7 7 C 1.38811 * 120.00333 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00091 * 201.78119 * 7 2 1 9 9 N 1.36939 * 119.99952 * 21.77817 * 7 2 1 10 10 C 1.46504 * 119.99963 * 35.08644 * 9 7 2 11 11 C 1.50695 * 109.47373 * 89.99787 * 10 9 7 12 12 C 1.38708 * 120.40325 * 269.72652 * 11 10 9 13 13 C 1.38569 * 118.43647 * 179.73350 * 12 11 10 14 14 C 1.38401 * 119.14590 * 0.53821 * 13 12 11 15 15 Cl 1.73598 * 119.63232 * 179.70365 * 14 13 12 16 16 N 1.31949 * 120.73173 * 359.72211 * 14 13 12 17 17 C 1.31906 * 121.70550 * 0.02562 * 16 14 13 18 18 C 1.46494 * 120.00018 * 215.08440 * 9 7 2 19 19 C 1.53004 * 117.50070 * 11.63757 * 18 9 7 20 20 C 1.52995 * 117.50069 * 302.97645 * 18 9 7 21 21 H 0.97000 * 120.00452 * 359.97182 * 1 2 3 22 22 H 1.09000 * 109.46824 * 209.99997 * 10 9 7 23 23 H 1.09004 * 109.46933 * 329.99831 * 10 9 7 24 24 H 1.07997 * 120.78551 * 359.97438 * 12 11 10 25 25 H 1.08001 * 120.42795 * 180.28306 * 13 12 11 26 26 H 1.08003 * 119.60791 * 179.97438 * 17 16 14 27 27 H 1.09003 * 115.55265 * 157.30710 * 18 9 7 28 28 H 1.08997 * 117.49630 * 359.97438 * 19 18 9 29 29 H 1.09000 * 117.49652 * 145.02158 * 19 18 9 30 30 H 1.09003 * 117.50087 * 214.97992 * 20 18 9 31 31 H 1.09002 * 117.49889 * 359.97438 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2851 2.7465 -0.0006 5 1 3.1039 1.6964 1.2125 6 1 3.1039 1.6964 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0325 -1.2353 0.3476 9 7 1.3990 -2.3459 -0.4389 10 6 0.4392 -2.2853 -1.5442 11 6 1.1657 -2.4720 -2.8512 12 6 1.6633 -1.3761 -3.5405 13 6 2.3295 -1.5952 -4.7357 14 6 2.4653 -2.8904 -5.2041 15 17 3.2908 -3.1787 -6.7037 16 7 1.9739 -3.9085 -4.5236 17 6 1.3388 -3.7363 -3.3804 18 6 1.7047 -3.6302 0.1960 19 6 2.4941 -3.6003 1.5063 20 6 3.1677 -4.0773 0.2172 21 1 -0.4851 0.8400 0.0004 22 1 -0.3027 -3.0748 -1.4248 23 1 -0.0584 -1.3155 -1.5404 24 1 1.5380 -0.3758 -3.1530 25 1 2.7340 -0.7655 -5.2965 26 1 0.9498 -4.5940 -2.8516 27 1 0.9439 -4.4028 0.0844 28 1 2.7864 -2.6251 1.8957 29 1 2.2530 -4.3535 2.2565 30 1 3.3695 -5.1441 0.1198 31 1 3.9028 -3.4161 -0.2418 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069221763.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:37 Heat of formation + Delta-G solvation = 73.232354 kcal Electronic energy + Delta-G solvation = -16272.031575 eV Core-core repulsion = 13580.802745 eV Total energy + Delta-G solvation = -2691.228830 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 252.072 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.73526 -37.15987 -36.30600 -33.99139 -32.18009 -31.47954 -29.72023 -25.92613 -23.96703 -23.18815 -21.46545 -21.36139 -19.95314 -17.05103 -16.50752 -16.20805 -15.50750 -14.67591 -14.53448 -14.00477 -13.92069 -13.38897 -13.00257 -12.67036 -12.09796 -11.67108 -11.38549 -11.24032 -11.08085 -10.93167 -10.70184 -10.64140 -10.54090 -10.18481 -9.77330 -9.50398 -9.32096 -9.15516 -8.60481 -8.31422 -6.74786 -6.00856 -3.56160 1.41817 1.68854 2.14693 3.23148 3.30525 3.32762 4.09503 4.30723 4.83530 4.89873 5.13428 5.21045 5.34492 5.45891 5.55446 5.80137 5.84315 5.96271 6.03469 6.13310 6.39283 6.41738 6.48629 6.53110 6.86921 6.94856 7.04447 7.07351 7.38534 7.63452 8.15199 8.27880 8.94210 9.56896 10.11816 10.97839 Molecular weight = 252.07amu Principal moments of inertia in cm(-1) A = 0.020049 B = 0.007705 C = 0.006328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.231896 B = 3632.961297 C = 4423.968378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.014 3.986 3 Si 0.895 3.105 4 H -0.287 1.287 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.258 4.258 8 H 0.065 0.935 9 N -0.541 5.541 10 C 0.174 3.826 11 C -0.114 4.114 12 C -0.048 4.048 13 C -0.156 4.156 14 C 0.151 3.849 15 Cl -0.058 7.058 16 N -0.485 5.485 17 C 0.112 3.888 18 C 0.124 3.876 19 C -0.192 4.192 20 C -0.226 4.226 21 H 0.259 0.741 22 H 0.044 0.956 23 H 0.115 0.885 24 H 0.141 0.859 25 H 0.134 0.866 26 H 0.155 0.845 27 H 0.090 0.910 28 H 0.099 0.901 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.882 -3.729 -6.306 7.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.187 4.187 3 Si 0.724 3.276 4 H -0.213 1.213 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.387 4.387 8 H 0.082 0.918 9 N -0.255 5.255 10 C 0.048 3.952 11 C -0.119 4.119 12 C -0.075 4.075 13 C -0.177 4.177 14 C -0.013 4.013 15 Cl -0.030 7.030 16 N -0.196 5.196 17 C -0.045 4.045 18 C 0.015 3.985 19 C -0.231 4.231 20 C -0.266 4.266 21 H 0.070 0.930 22 H 0.062 0.938 23 H 0.132 0.868 24 H 0.159 0.841 25 H 0.152 0.848 26 H 0.172 0.828 27 H 0.108 0.892 28 H 0.117 0.883 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.884 -4.415 -6.724 8.261 hybrid contribution 0.718 1.623 0.196 1.785 sum 2.601 -2.792 -6.528 7.561 Atomic orbital electron populations 1.69939 1.05503 1.26331 1.50485 1.25115 0.95020 0.98712 0.99826 0.86483 0.79359 0.83078 0.78710 1.21313 1.20462 1.20606 1.18950 0.94778 0.85311 1.39651 0.91774 1.43336 1.49139 1.01736 1.31316 1.20109 0.89981 1.04521 0.80593 1.22331 0.98353 0.92960 0.98233 1.21551 0.93551 1.00514 0.91901 1.21767 1.01986 0.95819 0.98178 1.21347 0.99319 0.90220 0.90440 1.98351 1.76713 1.97082 1.30881 1.66839 1.09988 1.34526 1.08245 1.22474 0.94990 0.96942 0.90130 1.21151 0.90972 0.90065 0.96267 1.23086 1.06649 1.02230 0.91110 1.23378 1.00714 0.99274 1.03282 0.93045 0.93779 0.86793 0.84140 0.84801 0.82796 0.89200 0.88286 0.90584 0.90772 0.89858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.89 11.31 55.49 0.63 -22.26 16 2 C 0.01 0.35 4.97 -17.43 -0.09 0.27 16 3 Si 0.90 19.93 29.61 -169.99 -5.03 14.90 16 4 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.26 -6.39 8.21 -15.06 -0.12 -6.51 16 8 H 0.06 1.64 7.14 -52.49 -0.37 1.27 16 9 N -0.54 -12.19 2.78 -167.03 -0.46 -12.65 16 10 C 0.17 3.64 5.49 -5.19 -0.03 3.61 16 11 C -0.11 -2.15 5.48 -104.48 -0.57 -2.72 16 12 C -0.05 -0.89 9.86 -39.29 -0.39 -1.28 16 13 C -0.16 -2.60 9.88 -39.40 -0.39 -2.98 16 14 C 0.15 2.60 7.27 -17.44 -0.13 2.48 16 15 Cl -0.06 -0.87 29.11 -51.86 -1.51 -2.38 16 16 N -0.49 -8.86 10.34 -10.36 -0.11 -8.96 16 17 C 0.11 1.99 10.86 -17.55 -0.19 1.80 16 18 C 0.12 2.48 6.60 -67.93 -0.45 2.03 16 19 C -0.19 -3.65 9.79 -26.69 -0.26 -3.91 16 20 C -0.23 -4.19 10.16 -26.70 -0.27 -4.46 16 21 H 0.26 6.55 8.31 -40.82 -0.34 6.21 16 22 H 0.04 0.85 8.00 -51.93 -0.42 0.43 16 23 H 0.11 2.67 5.30 -51.93 -0.27 2.39 16 24 H 0.14 2.63 8.06 -52.49 -0.42 2.21 16 25 H 0.13 1.87 8.06 -52.49 -0.42 1.45 16 26 H 0.15 2.41 8.06 -52.48 -0.42 1.99 16 27 H 0.09 1.62 8.11 -51.93 -0.42 1.20 16 28 H 0.10 2.09 6.80 -51.93 -0.35 1.73 16 29 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.08 1.70 8.14 -51.93 -0.42 1.27 16 LS Contribution 285.28 15.07 4.30 4.30 Total: -1.00 -26.04 285.28 -8.58 -34.62 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -3.51 Total: 4.11 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: -2.89 Total: -11.69 kcal Atomic # 7 Polarization: -43.93 SS G_CDS: 0.06 Total: -43.87 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.03 Total: 14.90 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -1.51 Total: -2.38 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -26.04 -8.58 -34.62 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069221763.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.855 kcal (2) G-P(sol) polarization free energy of solvation -26.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds