Wall clock time and date at job start Sun Mar 29 2020 22:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00138 * 2 1 4 4 H 1.48493 * 109.46966 * 359.97438 * 3 2 1 5 5 H 1.48508 * 109.47075 * 119.99525 * 3 2 1 6 6 H 1.48498 * 109.47161 * 239.99405 * 3 2 1 7 7 C 1.38818 * 119.99932 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00031 * 199.39854 * 7 2 1 9 9 N 1.36933 * 119.99892 * 19.39762 * 7 2 1 10 10 C 1.46494 * 120.00041 * 39.12806 * 9 7 2 11 11 C 1.50699 * 109.47246 * 90.00153 * 10 9 7 12 12 C 1.38647 * 120.79483 * 259.71979 * 11 10 9 13 13 C 1.38189 * 119.17897 * 179.72978 * 12 11 10 14 14 N 1.31879 * 120.79335 * 0.55367 * 13 12 11 15 15 C 1.31850 * 121.73753 * 359.72051 * 14 13 12 16 16 C 1.38347 * 120.74654 * 359.97438 * 15 14 13 17 17 Cl 1.73598 * 120.43596 * 179.97438 * 16 15 14 18 18 C 1.46505 * 119.99889 * 219.13074 * 9 7 2 19 19 C 1.52996 * 117.49852 * 12.97585 * 18 9 7 20 20 C 1.53004 * 60.00258 * 252.51329 * 19 18 9 21 21 H 0.96997 * 120.00240 * 354.91245 * 1 2 3 22 22 H 1.09005 * 109.47108 * 210.00037 * 10 9 7 23 23 H 1.09000 * 109.47291 * 330.00050 * 10 9 7 24 24 H 1.08003 * 120.41322 * 359.97438 * 12 11 10 25 25 H 1.08005 * 119.60560 * 180.27979 * 13 12 11 26 26 H 1.08001 * 119.62674 * 179.97438 * 15 14 13 27 27 H 1.08994 * 115.55136 * 158.68847 * 18 9 7 28 28 H 1.08996 * 117.49945 * 359.97438 * 19 18 9 29 29 H 1.08997 * 117.50164 * 145.02447 * 19 18 9 30 30 H 1.09001 * 117.49772 * 252.51405 * 20 19 18 31 31 H 1.08997 * 117.49970 * 107.48484 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7464 -0.0006 5 1 3.1039 1.6964 1.2126 6 1 3.1040 1.6963 -1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0442 -1.2286 0.3112 9 7 1.3838 -2.3546 -0.3928 10 6 0.4509 -2.3324 -1.5221 11 6 1.2024 -2.6033 -2.7999 12 6 1.5636 -1.5649 -3.6448 13 6 2.2571 -1.8508 -4.8053 14 7 2.5660 -3.0941 -5.1184 15 6 2.2346 -4.1074 -4.3426 16 6 1.5450 -3.8981 -3.1617 17 17 1.1121 -5.2384 -2.1468 18 6 1.6466 -3.6097 0.3158 19 6 2.3789 -3.5241 1.6563 20 6 3.1021 -4.0690 0.4230 21 1 -0.4850 0.8367 0.0745 22 1 -0.3109 -3.0989 -1.3792 23 1 -0.0251 -1.3536 -1.5810 24 1 1.3094 -0.5449 -3.3969 25 1 2.5458 -1.0467 -5.4661 26 1 2.5046 -5.1122 -4.6324 27 1 0.8826 -4.3795 0.2075 28 1 2.6656 -2.5341 2.0109 29 1 2.0968 -4.2377 2.4305 30 1 3.2956 -5.1411 0.3857 31 1 3.8641 -3.4374 -0.0336 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075681030.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:18 Heat of formation + Delta-G solvation = 75.953511 kcal Electronic energy + Delta-G solvation = -16641.684304 eV Core-core repulsion = 13950.573472 eV Total energy + Delta-G solvation = -2691.110832 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 252.072 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.70835 -37.08485 -36.07558 -34.03645 -32.28284 -30.57887 -30.04208 -26.19463 -23.96474 -22.97765 -21.45329 -21.35323 -19.91675 -16.85445 -16.25592 -15.87716 -15.49311 -15.29046 -14.52952 -13.91599 -13.82065 -13.50086 -12.91729 -12.40581 -12.01763 -11.83716 -11.42617 -11.21641 -10.93248 -10.79634 -10.62016 -10.58151 -10.42682 -10.08098 -9.70210 -9.37538 -9.12942 -8.86823 -8.58290 -8.43703 -6.60426 -5.98677 -3.55468 1.42322 1.70386 2.56857 3.25659 3.32072 3.34629 4.12518 4.33008 4.78453 4.94703 5.14759 5.20198 5.26292 5.44006 5.52296 5.85482 5.92935 6.06359 6.11394 6.22305 6.34247 6.49730 6.52775 6.62586 6.88289 6.98477 7.01586 7.16604 7.37154 7.69187 8.24589 8.36589 8.99218 9.60567 10.19037 11.02866 Molecular weight = 252.07amu Principal moments of inertia in cm(-1) A = 0.019015 B = 0.010718 C = 0.007898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.176337 B = 2611.787719 C = 3544.379313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.020 3.980 3 Si 0.898 3.102 4 H -0.288 1.288 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.262 4.262 8 H 0.062 0.938 9 N -0.536 5.536 10 C 0.174 3.826 11 C -0.024 4.024 12 C -0.145 4.145 13 C 0.087 3.913 14 N -0.489 5.489 15 C 0.097 3.903 16 C -0.081 4.081 17 Cl -0.064 7.064 18 C 0.134 3.866 19 C -0.198 4.198 20 C -0.220 4.220 21 H 0.260 0.740 22 H 0.049 0.951 23 H 0.111 0.889 24 H 0.138 0.862 25 H 0.152 0.848 26 H 0.152 0.848 27 H 0.090 0.910 28 H 0.098 0.902 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.174 -5.781 -5.151 7.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.181 4.181 3 Si 0.727 3.273 4 H -0.213 1.213 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.391 4.391 8 H 0.080 0.920 9 N -0.251 5.251 10 C 0.048 3.952 11 C -0.036 4.036 12 C -0.166 4.166 13 C -0.069 4.069 14 N -0.200 5.200 15 C -0.060 4.060 16 C -0.111 4.111 17 Cl -0.035 7.035 18 C 0.025 3.975 19 C -0.236 4.236 20 C -0.261 4.261 21 H 0.071 0.929 22 H 0.067 0.933 23 H 0.128 0.872 24 H 0.156 0.844 25 H 0.170 0.830 26 H 0.170 0.830 27 H 0.108 0.892 28 H 0.117 0.883 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.410 -5.865 -5.860 8.410 hybrid contribution 0.211 0.937 0.977 1.370 sum 1.621 -4.929 -4.883 7.125 Atomic orbital electron populations 1.69858 1.05565 1.26578 1.50583 1.25256 0.95116 0.98742 0.98983 0.86436 0.79267 0.82922 0.78662 1.21342 1.20496 1.20544 1.18909 0.93843 0.84530 1.41861 0.92050 1.43191 1.50462 1.03349 1.28113 1.20132 0.90261 1.03974 0.80839 1.21742 0.94936 0.90093 0.96848 1.22100 0.99461 1.00530 0.94473 1.22712 0.95015 0.93656 0.95472 1.67707 1.20234 0.99938 1.32081 1.22543 0.95076 0.98531 0.89886 1.21973 1.04366 0.89989 0.94783 1.98325 1.91799 1.45089 1.68284 1.21165 0.91505 0.90360 0.94477 1.23113 1.06921 1.02021 0.91574 1.23284 1.00080 0.98737 1.04021 0.92938 0.93317 0.87157 0.84387 0.83030 0.83037 0.89188 0.88335 0.90816 0.90983 0.90047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.55 11.45 55.49 0.64 -22.91 16 2 C 0.02 0.52 4.99 -17.43 -0.09 0.43 16 3 Si 0.90 20.35 29.60 -169.99 -5.03 15.32 16 4 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 7 C -0.26 -6.70 8.03 -15.06 -0.12 -6.82 16 8 H 0.06 1.62 7.31 -52.49 -0.38 1.23 16 9 N -0.54 -12.61 2.75 -167.02 -0.46 -13.07 16 10 C 0.17 3.83 5.06 -5.20 -0.03 3.81 16 11 C -0.02 -0.48 5.50 -104.28 -0.57 -1.05 16 12 C -0.14 -2.65 9.78 -39.45 -0.39 -3.04 16 13 C 0.09 1.44 11.18 -17.55 -0.20 1.24 16 14 N -0.49 -8.40 10.36 -13.22 -0.14 -8.54 16 15 C 0.10 1.61 10.99 -17.50 -0.19 1.42 16 16 C -0.08 -1.46 6.34 -39.35 -0.25 -1.71 16 17 Cl -0.06 -1.04 24.68 -51.86 -1.28 -2.32 16 18 C 0.13 2.81 4.92 -67.93 -0.33 2.48 16 19 C -0.20 -3.96 9.81 -26.73 -0.26 -4.22 16 20 C -0.22 -4.28 10.12 -26.73 -0.27 -4.55 16 21 H 0.26 6.72 8.32 -40.82 -0.34 6.38 16 22 H 0.05 1.04 7.36 -51.93 -0.38 0.65 16 23 H 0.11 2.69 5.45 -51.93 -0.28 2.40 16 24 H 0.14 2.52 8.06 -52.48 -0.42 2.09 16 25 H 0.15 2.01 8.06 -52.48 -0.42 1.59 16 26 H 0.15 2.10 8.06 -52.49 -0.42 1.68 16 27 H 0.09 1.81 6.81 -51.93 -0.35 1.45 16 28 H 0.10 2.17 6.94 -51.93 -0.36 1.81 16 29 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 30 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 31 H 0.08 1.72 8.07 -51.93 -0.42 1.30 16 LS Contribution 277.60 15.07 4.18 4.18 Total: -1.00 -26.81 277.60 -8.22 -35.03 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -3.43 Total: 4.32 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: -2.70 Total: -12.01 kcal Atomic # 7 Polarization: -44.56 SS G_CDS: 0.04 Total: -44.52 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.03 Total: 15.32 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -1.28 Total: -2.32 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -26.81 -8.22 -35.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075681030.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.979 kcal (2) G-P(sol) polarization free energy of solvation -26.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds