Wall clock time and date at job start Sun Mar 29 2020 22:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 119.99807 * 2 1 4 4 H 1.48496 * 109.46966 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47498 * 300.00193 * 3 2 1 6 6 H 1.48508 * 109.47017 * 60.00116 * 3 2 1 7 7 C 1.37877 * 119.99791 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99383 * 185.08366 * 7 2 1 9 9 C 1.50696 * 120.00099 * 5.08017 * 7 2 1 10 10 C 1.53004 * 115.54807 * 279.39827 * 9 7 2 11 11 S 1.81393 * 109.47339 * 320.11151 * 10 9 7 12 12 C 1.76197 * 103.00033 * 180.02562 * 11 10 9 13 13 C 1.38891 * 120.08457 * 359.72549 * 12 11 10 14 14 C 1.38137 * 119.94183 * 179.70327 * 13 12 11 15 15 C 1.38282 * 120.11872 * 0.59194 * 14 13 12 16 16 C 1.38307 * 120.16926 * 359.68232 * 15 14 13 17 17 C 1.38257 * 120.05610 * 0.02562 * 16 15 14 18 18 F 1.35097 * 120.05699 * 180.02562 * 17 16 15 19 19 C 1.52997 * 117.49910 * 65.07105 * 9 7 2 20 20 C 1.53000 * 60.03370 * 107.50168 * 19 9 7 21 21 H 0.97000 * 119.99700 * 354.99862 * 1 2 3 22 22 H 1.08998 * 109.46744 * 80.11299 * 10 9 7 23 23 H 1.09003 * 109.46595 * 200.10692 * 10 9 7 24 24 H 1.07995 * 120.03084 * 359.97437 * 13 12 11 25 25 H 1.08001 * 119.93830 * 180.27469 * 14 13 12 26 26 H 1.08001 * 119.92034 * 179.70026 * 15 14 13 27 27 H 1.08001 * 119.97157 * 179.97438 * 16 15 14 28 28 H 1.09005 * 117.49700 * 214.99785 * 19 9 7 29 29 H 1.08994 * 117.49876 * 359.97438 * 19 9 7 30 30 H 1.08995 * 117.50228 * 107.49610 * 20 19 9 31 31 H 1.08996 * 117.49747 * 252.52797 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0813 -1.1959 0.0823 9 6 1.2555 -2.4965 -0.1167 10 6 0.6282 -3.0148 1.1791 11 16 1.7675 -2.7252 2.5605 12 6 0.8890 -3.3763 3.9421 13 6 -0.3736 -3.9279 3.7671 14 6 -1.0572 -4.4431 4.8513 15 6 -0.4919 -4.3996 6.1125 16 6 0.7627 -3.8463 6.2931 17 6 1.4558 -3.3340 5.2120 18 9 2.6815 -2.7940 5.3883 19 6 0.5043 -2.7655 -1.4221 20 6 1.7897 -3.5335 -1.1079 21 1 -0.4850 0.8369 0.0732 22 1 -0.3087 -2.4895 1.3645 23 1 0.4336 -4.0833 1.0864 24 1 -0.8188 -3.9580 2.7836 25 1 -2.0372 -4.8760 4.7144 26 1 -1.0312 -4.7990 6.9587 27 1 1.2011 -3.8136 7.2796 28 1 -0.4368 -3.3117 -1.3579 29 1 0.5516 -2.0002 -2.1968 30 1 1.6942 -4.5849 -0.8368 31 1 2.6830 -3.2734 -1.6756 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088259649.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:48:52 Heat of formation + Delta-G solvation = -1.016096 kcal Electronic energy + Delta-G solvation = -15753.351829 eV Core-core repulsion = 13041.027089 eV Total energy + Delta-G solvation = -2712.324740 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 252.068 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.50841 -38.47137 -36.68218 -32.03092 -31.08277 -30.15028 -27.78187 -25.42872 -22.85962 -22.32544 -21.22089 -19.39173 -17.67912 -16.64709 -16.18800 -15.83007 -15.29002 -14.73370 -14.63562 -14.02207 -13.68083 -13.50602 -13.04957 -12.84300 -12.42641 -12.06338 -11.87301 -11.57543 -11.05705 -10.95936 -10.79194 -10.54357 -10.26300 -9.75071 -9.50785 -9.42769 -8.89183 -8.63120 -8.54877 -8.12685 -6.64775 -6.11399 -4.17066 1.34029 1.38730 2.22581 3.27180 3.34515 3.36371 3.40922 3.75644 4.37510 4.52328 4.93078 5.07005 5.17666 5.20348 5.38673 5.50063 5.83294 5.86054 6.03589 6.21007 6.22399 6.30268 6.37545 6.39030 6.55751 6.62685 6.70586 6.95355 7.04941 7.23326 7.37005 7.82052 8.27962 8.83587 9.49215 10.97102 Molecular weight = 252.07amu Principal moments of inertia in cm(-1) A = 0.023489 B = 0.007145 C = 0.006316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.759912 B = 3917.908915 C = 4432.303423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.079 3.921 3 Si 0.889 3.111 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.282 1.282 7 C -0.492 4.492 8 H 0.065 0.935 9 C 0.053 3.947 10 C -0.058 4.058 11 S -0.037 6.037 12 C -0.127 4.127 13 C -0.116 4.116 14 C -0.110 4.110 15 C -0.120 4.120 16 C -0.137 4.137 17 C 0.098 3.902 18 F -0.134 7.134 19 C -0.152 4.152 20 C -0.206 4.206 21 H 0.261 0.739 22 H 0.089 0.911 23 H 0.056 0.944 24 H 0.132 0.868 25 H 0.125 0.875 26 H 0.126 0.874 27 H 0.132 0.868 28 H 0.064 0.936 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.044 -7.931 8.190 11.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.125 4.125 3 Si 0.717 3.283 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.208 1.208 7 C -0.531 4.531 8 H 0.083 0.917 9 C 0.052 3.948 10 C -0.207 4.207 11 S 0.216 5.784 12 C -0.242 4.242 13 C -0.142 4.142 14 C -0.130 4.130 15 C -0.142 4.142 16 C -0.158 4.158 17 C 0.072 3.928 18 F -0.112 7.112 19 C -0.192 4.192 20 C -0.243 4.243 21 H 0.071 0.929 22 H 0.107 0.893 23 H 0.074 0.926 24 H 0.149 0.851 25 H 0.143 0.857 26 H 0.144 0.856 27 H 0.150 0.850 28 H 0.082 0.918 29 H 0.103 0.897 30 H 0.086 0.914 31 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.000 -7.212 7.943 10.775 hybrid contribution -0.845 0.441 0.121 0.961 sum -1.845 -6.771 8.063 10.690 Atomic orbital electron populations 1.69960 1.05968 1.26927 1.48284 1.24931 0.94781 0.98971 0.93820 0.86561 0.80490 0.83622 0.77645 1.19473 1.20965 1.20766 1.20381 0.92986 0.88237 1.51535 0.91683 1.18458 0.97864 0.93984 0.84537 1.23374 1.00458 1.00314 0.96511 1.86258 1.24848 1.71153 0.96185 1.22747 0.99522 1.03072 0.98822 1.21139 0.93367 0.99579 1.00065 1.21070 0.99802 0.99639 0.92519 1.20841 0.94959 1.01076 0.97363 1.20972 0.96059 1.01044 0.97688 1.17097 0.82128 1.00789 0.92818 1.91490 1.40183 1.83669 1.95874 1.22618 0.92851 1.01595 1.02128 1.23082 0.98231 0.95573 1.07455 0.92898 0.89277 0.92588 0.85056 0.85716 0.85559 0.85047 0.91751 0.89738 0.91444 0.90067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.92 13.08 55.43 0.73 -23.20 16 2 C 0.08 2.12 5.42 -17.82 -0.10 2.02 16 3 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 7 C -0.49 -12.97 7.53 -34.44 -0.26 -13.23 16 8 H 0.07 1.76 7.82 -52.49 -0.41 1.35 16 9 C 0.05 1.26 1.58 -155.62 -0.25 1.01 16 10 C -0.06 -1.25 4.45 37.16 0.17 -1.09 16 11 S -0.04 -0.79 20.38 -107.50 -2.19 -2.98 16 12 C -0.13 -2.37 6.11 -39.01 -0.24 -2.61 16 13 C -0.12 -1.89 9.36 -39.38 -0.37 -2.26 16 14 C -0.11 -1.46 10.04 -39.60 -0.40 -1.86 16 15 C -0.12 -1.48 10.04 -39.54 -0.40 -1.87 16 16 C -0.14 -1.90 10.02 -39.55 -0.40 -2.30 16 17 C 0.10 1.71 7.28 -39.24 -0.29 1.42 16 18 F -0.13 -2.47 16.76 2.25 0.04 -2.43 16 19 C -0.15 -3.39 9.68 -26.73 -0.26 -3.65 16 20 C -0.21 -4.32 9.89 -26.69 -0.26 -4.58 16 21 H 0.26 6.88 8.32 -40.82 -0.34 6.54 16 22 H 0.09 2.05 7.74 -51.92 -0.40 1.64 16 23 H 0.06 1.07 7.57 -51.92 -0.39 0.68 16 24 H 0.13 2.10 5.88 -52.49 -0.31 1.79 16 25 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 26 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 27 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 28 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.08 1.99 8.14 -51.93 -0.42 1.57 16 30 H 0.07 1.27 8.09 -51.93 -0.42 0.85 16 31 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 LS Contribution 286.49 15.07 4.32 4.32 Total: -1.00 -27.77 286.49 -8.78 -36.55 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -3.61 Total: 0.69 kcal Atomic # 6 Polarization: -25.94 SS G_CDS: -3.04 Total: -28.98 kcal Atomic # 7 Polarization: -23.92 SS G_CDS: 0.73 Total: -23.20 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.04 Total: -2.43 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: -0.79 SS G_CDS: -2.19 Total: -2.98 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -27.77 -8.78 -36.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259649.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.535 kcal (2) G-P(sol) polarization free energy of solvation -27.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds