Wall clock time and date at job start Sun Mar 29 2020 22:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 119.99807 * 2 1 4 4 H 1.48496 * 109.46966 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47498 * 300.00193 * 3 2 1 6 6 H 1.48508 * 109.47017 * 60.00116 * 3 2 1 7 7 C 1.37877 * 119.99791 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99383 * 185.08366 * 7 2 1 9 9 C 1.50696 * 120.00099 * 5.08017 * 7 2 1 10 10 C 1.53004 * 115.54807 * 279.39827 * 9 7 2 11 11 S 1.81393 * 109.47339 * 320.11151 * 10 9 7 12 12 C 1.76197 * 103.00033 * 180.02562 * 11 10 9 13 13 C 1.38891 * 120.08457 * 359.72549 * 12 11 10 14 14 C 1.38137 * 119.94183 * 179.70327 * 13 12 11 15 15 C 1.38282 * 120.11872 * 0.59194 * 14 13 12 16 16 C 1.38307 * 120.16926 * 359.68232 * 15 14 13 17 17 C 1.38257 * 120.05610 * 0.02562 * 16 15 14 18 18 F 1.35097 * 120.05699 * 180.02562 * 17 16 15 19 19 C 1.52997 * 117.49910 * 65.07105 * 9 7 2 20 20 C 1.53000 * 60.03370 * 107.50168 * 19 9 7 21 21 H 0.97000 * 119.99700 * 354.99862 * 1 2 3 22 22 H 1.08998 * 109.46744 * 80.11299 * 10 9 7 23 23 H 1.09003 * 109.46595 * 200.10692 * 10 9 7 24 24 H 1.07995 * 120.03084 * 359.97437 * 13 12 11 25 25 H 1.08001 * 119.93830 * 180.27469 * 14 13 12 26 26 H 1.08001 * 119.92034 * 179.70026 * 15 14 13 27 27 H 1.08001 * 119.97157 * 179.97438 * 16 15 14 28 28 H 1.09005 * 117.49700 * 214.99785 * 19 9 7 29 29 H 1.08994 * 117.49876 * 359.97438 * 19 9 7 30 30 H 1.08995 * 117.50228 * 107.49610 * 20 19 9 31 31 H 1.08996 * 117.49747 * 252.52797 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0813 -1.1959 0.0823 9 6 1.2555 -2.4965 -0.1167 10 6 0.6282 -3.0148 1.1791 11 16 1.7675 -2.7252 2.5605 12 6 0.8890 -3.3763 3.9421 13 6 -0.3736 -3.9279 3.7671 14 6 -1.0572 -4.4431 4.8513 15 6 -0.4919 -4.3996 6.1125 16 6 0.7627 -3.8463 6.2931 17 6 1.4558 -3.3340 5.2120 18 9 2.6815 -2.7940 5.3883 19 6 0.5043 -2.7655 -1.4221 20 6 1.7897 -3.5335 -1.1079 21 1 -0.4850 0.8369 0.0732 22 1 -0.3087 -2.4895 1.3645 23 1 0.4336 -4.0833 1.0864 24 1 -0.8188 -3.9580 2.7836 25 1 -2.0372 -4.8760 4.7144 26 1 -1.0312 -4.7990 6.9587 27 1 1.2011 -3.8136 7.2796 28 1 -0.4368 -3.3117 -1.3579 29 1 0.5516 -2.0002 -2.1968 30 1 1.6942 -4.5849 -0.8368 31 1 2.6830 -3.2734 -1.6756 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088259649.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:48:51 Heat of formation + Delta-G solvation = -13.865639 kcal Electronic energy + Delta-G solvation = -15753.909027 eV Core-core repulsion = 13041.027089 eV Total energy + Delta-G solvation = -2712.881937 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 252.068 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.85618 -39.63534 -38.47100 -34.03608 -32.27496 -31.32069 -29.46535 -27.42280 -24.03046 -23.54529 -22.95681 -21.19923 -19.06372 -18.15028 -17.68986 -17.22293 -16.66958 -16.60268 -16.03603 -15.67144 -15.19137 -14.88963 -14.64961 -14.15069 -14.06406 -13.43607 -13.37067 -12.98354 -12.88804 -12.87070 -12.41031 -12.11585 -11.99059 -11.56614 -11.07878 -10.80854 -10.67401 -10.48149 -9.92367 -9.80772 -8.23762 -8.13096 -6.22334 0.14921 0.22866 0.71280 1.36668 1.40807 1.50034 1.78729 2.41383 2.61641 3.16520 3.31085 3.42695 3.81555 4.07228 4.14302 4.30594 4.35981 4.39211 4.58304 4.61937 4.72311 4.89974 4.97713 5.06559 5.10345 5.19254 5.29024 5.43930 5.49250 5.59719 5.75446 5.93580 6.33081 6.79220 7.44854 8.94176 Molecular weight = 252.07amu Principal moments of inertia in cm(-1) A = 0.023489 B = 0.007145 C = 0.006316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.759912 B = 3917.908915 C = 4432.303423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.040 3.960 3 Si 0.936 3.064 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.283 1.283 7 C -0.498 4.498 8 H 0.047 0.953 9 C 0.021 3.979 10 C -0.033 4.033 11 S -0.105 6.105 12 C -0.148 4.148 13 C -0.128 4.128 14 C -0.103 4.103 15 C -0.099 4.099 16 C -0.132 4.132 17 C 0.072 3.928 18 F -0.149 7.149 19 C -0.151 4.151 20 C -0.185 4.185 21 H 0.260 0.740 22 H 0.067 0.933 23 H 0.077 0.923 24 H 0.127 0.873 25 H 0.162 0.838 26 H 0.175 0.825 27 H 0.162 0.838 28 H 0.081 0.919 29 H 0.064 0.936 30 H 0.094 0.906 31 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.338 -9.591 10.018 14.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.162 4.162 3 Si 0.763 3.237 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.209 1.209 7 C -0.537 4.537 8 H 0.065 0.935 9 C 0.019 3.981 10 C -0.181 4.181 11 S 0.144 5.856 12 C -0.262 4.262 13 C -0.153 4.153 14 C -0.123 4.123 15 C -0.120 4.120 16 C -0.152 4.152 17 C 0.046 3.954 18 F -0.128 7.128 19 C -0.191 4.191 20 C -0.222 4.222 21 H 0.069 0.931 22 H 0.085 0.915 23 H 0.096 0.904 24 H 0.145 0.855 25 H 0.179 0.821 26 H 0.192 0.808 27 H 0.179 0.821 28 H 0.100 0.900 29 H 0.082 0.918 30 H 0.113 0.887 31 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.302 -8.884 9.779 13.411 hybrid contribution -0.500 0.844 -0.288 1.022 sum -2.802 -8.040 9.491 12.751 Atomic orbital electron populations 1.70030 1.06708 1.27226 1.49653 1.25465 0.95454 1.01263 0.94016 0.85829 0.79410 0.80903 0.77568 1.19587 1.20324 1.20930 1.20493 0.92353 0.89921 1.50932 0.93466 1.18592 0.99297 0.94207 0.86005 1.23064 0.98834 1.00972 0.95261 1.86237 1.26841 1.73785 0.98727 1.22605 1.00599 1.05443 0.97569 1.21300 0.92770 0.99931 1.01270 1.21527 1.00861 0.98074 0.91834 1.21443 0.93901 0.98287 0.98379 1.21405 0.96404 0.99603 0.97800 1.17558 0.82228 1.02092 0.93556 1.91447 1.41220 1.84160 1.95935 1.22545 0.94284 1.01582 1.00673 1.23098 0.97357 0.96393 1.05316 0.93067 0.91485 0.90446 0.85483 0.82058 0.80811 0.82051 0.90037 0.91774 0.88721 0.90266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.23 13.08 21.45 0.28 -49.94 16 2 C 0.04 2.16 5.42 84.65 0.46 2.62 16 3 Si 0.94 44.18 29.54 68.60 2.03 46.21 16 4 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 6 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 7 C -0.50 -26.98 7.53 25.60 0.19 -26.78 16 8 H 0.05 2.65 7.82 -2.91 -0.02 2.63 16 9 C 0.02 0.98 1.58 -52.90 -0.08 0.90 16 10 C -0.03 -1.44 4.45 71.98 0.32 -1.12 16 11 S -0.11 -4.68 20.38 -56.49 -1.15 -5.83 16 12 C -0.15 -5.51 6.11 22.64 0.14 -5.37 16 13 C -0.13 -3.99 9.36 22.40 0.21 -3.78 16 14 C -0.10 -2.31 10.04 22.26 0.22 -2.09 16 15 C -0.10 -1.92 10.04 22.30 0.22 -1.69 16 16 C -0.13 -3.21 10.02 22.29 0.22 -2.99 16 17 C 0.07 2.43 7.28 22.49 0.16 2.60 16 18 F -0.15 -5.57 16.76 44.97 0.75 -4.82 16 19 C -0.15 -6.71 9.68 30.59 0.30 -6.42 16 20 C -0.18 -7.59 9.89 30.62 0.30 -7.29 16 21 H 0.26 13.99 8.32 -92.71 -0.77 13.22 16 22 H 0.07 3.16 7.74 -2.39 -0.02 3.14 16 23 H 0.08 2.94 7.57 -2.39 -0.02 2.92 16 24 H 0.13 3.97 5.88 -2.91 -0.02 3.96 16 25 H 0.16 2.45 8.06 -2.91 -0.02 2.43 16 26 H 0.17 1.83 8.06 -2.91 -0.02 1.81 16 27 H 0.16 2.91 8.06 -2.91 -0.02 2.89 16 28 H 0.08 3.28 8.14 -2.38 -0.02 3.26 16 29 H 0.06 3.07 8.14 -2.39 -0.02 3.05 16 30 H 0.09 3.36 8.09 -2.39 -0.02 3.34 16 31 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 Total: -1.00 -62.23 286.49 5.70 -56.53 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: 1.13 Total: 9.26 kcal Atomic # 6 Polarization: -54.07 SS G_CDS: 2.67 Total: -51.40 kcal Atomic # 7 Polarization: -50.23 SS G_CDS: 0.28 Total: -49.94 kcal Atomic # 9 Polarization: -5.57 SS G_CDS: 0.75 Total: -4.82 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Atomic # 16 Polarization: -4.68 SS G_CDS: -1.15 Total: -5.83 kcal Total: -62.23 5.70 -56.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259649.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.662 kcal (2) G-P(sol) polarization free energy of solvation -62.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds