Wall clock time and date at job start Sun Mar 29 2020 23:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40190 * 120.36896 * 2 1 4 4 C 1.35351 * 119.95228 * 179.97438 * 3 2 1 5 5 N 1.35765 * 120.69816 * 359.97438 * 4 3 2 6 6 C 1.46495 * 119.62413 * 180.02562 * 5 4 3 7 7 C 1.53002 * 109.47508 * 89.99704 * 6 5 4 8 8 C 1.50700 * 109.47184 * 180.02562 * 7 6 5 9 9 H 1.07995 * 120.00368 * 0.02562 * 8 7 6 10 10 C 1.37878 * 119.99814 * 180.02562 * 8 7 6 11 11 N 1.31512 * 120.00170 * 180.02562 * 10 8 7 12 12 Si 1.86804 * 120.00079 * 359.97438 * 10 8 7 13 13 H 1.48499 * 109.47131 * 89.99862 * 12 10 8 14 14 H 1.48501 * 109.47394 * 210.00259 * 12 10 8 15 15 H 1.48505 * 109.47064 * 330.00385 * 12 10 8 16 16 C 1.34661 * 120.74932 * 359.97438 * 5 4 3 17 17 O 1.22066 * 119.98275 * 180.02562 * 16 5 4 18 18 C 1.36405 * 120.36603 * 179.71812 * 2 1 3 19 19 N 1.48003 * 120.34774 * 0.02819 * 18 2 1 20 20 O 1.21804 * 120.00062 * 359.97438 * 19 18 2 21 21 O 1.21798 * 120.00239 * 179.97438 * 19 18 2 22 22 H 1.09002 * 109.47152 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46980 * 240.00086 * 1 2 3 24 24 H 1.09004 * 109.47113 * 120.00066 * 1 2 3 25 25 H 1.08004 * 120.02551 * 0.02562 * 3 2 1 26 26 H 1.08000 * 119.65018 * 179.97438 * 4 3 2 27 27 H 1.09002 * 109.47217 * 209.99813 * 6 5 4 28 28 H 1.09003 * 109.47219 * 329.99862 * 6 5 4 29 29 H 1.09002 * 109.46970 * 300.00259 * 7 6 5 30 30 H 1.09003 * 109.46752 * 59.99871 * 7 6 5 31 31 H 0.96996 * 120.00439 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2158 1.2095 0.0000 4 6 3.5693 1.1997 0.0005 5 7 4.2538 0.0273 0.0016 6 6 5.7187 0.0441 0.0027 7 6 6.2277 0.0507 1.4456 8 6 7.7345 0.0686 1.4466 9 1 8.2752 0.0751 0.5118 10 6 8.4230 0.0767 2.6412 11 7 9.7380 0.0928 2.6422 12 14 7.4879 0.0661 4.2583 13 1 7.2562 -1.3366 4.6870 14 1 8.2815 0.7755 5.2937 15 1 6.1824 0.7511 4.0796 16 6 3.6016 -1.1508 0.0026 17 8 4.2312 -2.1966 0.0040 18 6 2.1966 -1.1769 0.0058 19 7 1.4726 -2.4678 0.0115 20 8 0.2547 -2.4829 0.0115 21 8 2.0946 -3.5149 0.0162 22 1 -0.3633 1.0277 0.0005 23 1 -0.3633 -0.5138 0.8900 24 1 -0.3633 -0.5139 -0.8900 25 1 1.6822 2.1486 0.0004 26 1 4.1103 2.1344 0.0001 27 1 6.0926 -0.8419 -0.5104 28 1 6.0722 0.9380 -0.5113 29 1 5.8537 0.9367 1.9587 30 1 5.8741 -0.8432 1.9596 31 1 10.2224 0.0989 3.4826 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129680830.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:10:02 Heat of formation + Delta-G solvation = -33.470287 kcal Electronic energy + Delta-G solvation = -18436.883668 eV Core-core repulsion = 15300.318700 eV Total energy + Delta-G solvation = -3136.564968 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.094 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.47676 -42.33211 -38.75247 -37.46259 -37.15979 -35.22041 -32.93026 -31.73667 -30.12454 -27.81431 -26.53367 -24.30745 -23.61174 -22.57889 -20.39009 -19.95266 -19.23246 -18.68251 -18.48616 -17.77349 -17.11558 -16.56534 -16.27453 -15.50346 -15.19364 -14.86337 -14.46442 -14.21331 -13.98215 -13.74242 -13.52754 -13.23511 -13.06708 -12.39372 -12.32131 -12.16879 -12.10789 -11.95556 -11.88019 -11.65302 -11.33532 -11.23115 -10.88012 -9.56276 -8.38985 -6.44912 -1.23648 0.05455 0.39082 0.54541 1.26321 1.31768 1.38318 1.42051 2.13289 2.25710 2.96612 3.04789 3.43637 3.52232 3.60303 3.96697 4.16969 4.19867 4.47482 4.54262 4.64974 4.68154 4.96503 5.04355 5.08894 5.12652 5.22489 5.40757 5.48770 5.70169 6.11177 6.53475 6.62962 6.67984 7.20219 8.76773 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.029468 B = 0.005938 C = 0.005632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.952750 B = 4714.072961 C = 4970.558749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.135 3.865 3 C -0.236 4.236 4 C 0.215 3.785 5 N -0.488 5.488 6 C 0.109 3.891 7 C -0.017 4.017 8 C -0.531 4.531 9 H 0.049 0.951 10 C 0.017 3.983 11 N -0.940 5.940 12 Si 0.938 3.062 13 H -0.288 1.288 14 H -0.274 1.274 15 H -0.240 1.240 16 C 0.518 3.482 17 O -0.556 6.556 18 C -0.248 4.248 19 N 0.064 4.936 20 O -0.141 6.141 21 O -0.260 6.260 22 H 0.129 0.871 23 H 0.094 0.906 24 H 0.097 0.903 25 H 0.229 0.771 26 H 0.237 0.763 27 H 0.070 0.930 28 H 0.140 0.860 29 H 0.049 0.951 30 H -0.007 1.007 31 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.667 11.968 -5.383 24.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.129 3.871 3 C -0.258 4.258 4 C 0.084 3.916 5 N -0.194 5.194 6 C -0.011 4.011 7 C -0.055 4.055 8 C -0.570 4.570 9 H 0.067 0.933 10 C -0.182 4.182 11 N -0.580 5.580 12 Si 0.763 3.237 13 H -0.214 1.214 14 H -0.200 1.200 15 H -0.163 1.163 16 C 0.317 3.683 17 O -0.437 6.437 18 C -0.339 4.339 19 N 0.568 4.432 20 O -0.363 6.363 21 O -0.450 6.450 22 H 0.147 0.853 23 H 0.112 0.888 24 H 0.116 0.884 25 H 0.246 0.754 26 H 0.253 0.747 27 H 0.089 0.911 28 H 0.158 0.842 29 H 0.067 0.933 30 H 0.012 0.988 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.566 11.717 -5.287 23.411 hybrid contribution 0.386 -1.382 0.821 1.653 sum -19.180 10.335 -4.466 22.241 Atomic orbital electron populations 1.21504 0.85441 1.07158 1.04842 1.21024 1.00245 0.89578 0.76269 1.21406 0.91785 0.98800 1.13830 1.23791 0.94757 0.90735 0.82346 1.46005 1.10786 1.06397 1.56192 1.22210 0.73290 1.05736 0.99857 1.19782 0.95344 0.97015 0.93353 1.21127 0.90628 1.51350 0.93878 0.93297 1.25813 0.95493 0.93961 1.02943 1.70009 1.08048 1.51607 1.28331 0.85848 0.80097 0.78411 0.79385 1.21400 1.19958 1.16287 1.16414 0.87638 0.84532 0.79697 1.91102 1.69275 1.31829 1.51458 1.21497 0.92256 0.84807 1.35377 1.43045 1.00482 1.02756 0.96921 1.94337 0.95806 1.94065 1.52062 1.94671 1.69417 1.21450 1.59474 0.85283 0.88790 0.88438 0.75417 0.74714 0.91138 0.84171 0.93324 0.98827 0.92182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.48 8.39 71.24 0.60 -0.89 16 2 C 0.14 2.43 5.89 -19.82 -0.12 2.31 16 3 C -0.24 -2.17 9.66 22.08 0.21 -1.96 16 4 C 0.22 2.88 10.28 83.42 0.86 3.74 16 5 N -0.49 -13.69 2.58 -650.98 -1.68 -15.37 16 6 C 0.11 3.65 5.27 86.38 0.46 4.10 16 7 C -0.02 -0.73 4.36 29.85 0.13 -0.60 16 8 C -0.53 -28.63 9.66 25.60 0.25 -28.38 16 9 H 0.05 2.84 7.99 -2.91 -0.02 2.82 16 10 C 0.02 0.93 5.47 84.66 0.46 1.39 16 11 N -0.94 -56.92 13.96 21.45 0.30 -56.62 16 12 Si 0.94 43.16 27.47 68.60 1.88 45.05 16 13 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 14 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 15 H -0.24 -9.78 6.54 99.48 0.65 -9.13 16 16 C 0.52 19.52 7.40 84.82 0.63 20.15 16 17 O -0.56 -27.73 14.81 15.29 0.23 -27.51 16 18 C -0.25 -7.88 6.87 36.51 0.25 -7.63 16 19 N 0.06 2.41 4.45 -46.16 -0.21 2.21 16 20 O -0.14 -4.48 15.48 18.88 0.29 -4.19 16 21 O -0.26 -12.14 17.44 25.51 0.45 -11.69 16 22 H 0.13 0.21 7.93 -2.39 -0.02 0.19 16 23 H 0.09 1.27 7.31 -2.39 -0.02 1.26 16 24 H 0.10 1.23 7.34 -2.38 -0.02 1.21 16 25 H 0.23 -0.59 7.99 -2.91 -0.02 -0.61 16 26 H 0.24 0.65 8.04 -2.91 -0.02 0.62 16 27 H 0.07 2.85 7.39 -2.39 -0.02 2.83 16 28 H 0.14 3.46 8.01 -2.39 -0.02 3.44 16 29 H 0.05 1.84 7.20 -2.39 -0.02 1.82 16 30 H -0.01 -0.33 7.57 -2.39 -0.02 -0.35 16 31 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -87.88 275.28 6.08 -81.80 By element: Atomic # 1 Polarization: -7.02 SS G_CDS: 1.10 Total: -5.92 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: 3.73 Total: -7.76 kcal Atomic # 7 Polarization: -68.20 SS G_CDS: -1.59 Total: -69.79 kcal Atomic # 8 Polarization: -44.35 SS G_CDS: 0.96 Total: -43.38 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 1.88 Total: 45.05 kcal Total: -87.88 6.08 -81.80 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129680830.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.330 kcal (2) G-P(sol) polarization free energy of solvation -87.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds