Wall clock time and date at job start Sun Mar 29 2020 23:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46901 * 111.00444 * 2 1 4 4 C 1.50702 * 109.47073 * 293.95674 * 3 2 1 5 5 H 1.08003 * 119.99611 * 359.97438 * 4 3 2 6 6 C 1.37873 * 120.00148 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99954 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 120.00122 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.47069 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47470 * 119.99190 * 8 6 4 11 11 H 1.48495 * 109.46998 * 239.99516 * 8 6 4 12 12 C 1.39495 * 111.00171 * 123.95379 * 2 1 3 13 13 C 1.39256 * 119.93795 * 116.04023 * 12 2 1 14 14 F 1.35105 * 119.96996 * 0.02562 * 13 12 2 15 15 C 1.37873 * 120.06965 * 180.02562 * 13 12 2 16 16 C 1.39805 * 119.93331 * 359.97438 * 15 13 12 17 17 C 1.43197 * 120.06770 * 179.72336 * 16 15 13 18 18 N 6.73698 * 110.90823 * 124.00215 * 2 1 3 19 19 C 1.39803 * 119.86857 * 0.02562 * 16 15 13 20 20 C 1.37872 * 119.93574 * 0.04042 * 19 16 15 21 21 F 1.35099 * 119.96645 * 179.97438 * 20 19 16 22 22 H 1.09000 * 109.46970 * 296.05096 * 1 2 3 23 23 H 1.08997 * 109.47269 * 56.04496 * 1 2 3 24 24 H 1.09003 * 109.47328 * 176.04746 * 1 2 3 25 25 H 1.08997 * 109.46705 * 53.95369 * 3 2 1 26 26 H 1.09004 * 109.47229 * 173.95336 * 3 2 1 27 27 H 0.96997 * 119.99672 * 180.02562 * 7 6 4 28 28 H 1.08005 * 120.03727 * 179.97438 * 15 13 12 29 29 H 1.07998 * 120.03201 * 179.97438 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2984 5 1 1.0746 1.5112 -2.0487 6 6 2.0278 3.3491 -1.5289 7 7 2.7130 4.0015 -0.6154 8 14 1.5840 4.1864 -3.1387 9 1 0.8166 3.2438 -3.9918 10 1 0.7569 5.3880 -2.8602 11 1 2.8259 4.5929 -3.8440 12 6 1.9689 -0.7274 1.0802 13 6 2.7125 -1.8831 0.8553 14 9 2.9493 -2.2980 -0.4084 15 6 3.2075 -2.6043 1.9210 16 6 2.9627 -2.1741 3.2285 17 6 3.4704 -2.9243 4.3376 18 7 3.8732 -3.5194 5.2173 19 6 2.2158 -1.0135 3.4512 20 6 1.7222 -0.2971 2.3815 21 9 0.9999 0.8243 2.5960 22 1 -0.3633 0.4513 0.9233 23 1 -0.3634 0.5740 -0.8524 24 1 -0.3634 -1.0252 -0.0708 25 1 1.5612 1.9273 0.8309 26 1 3.0798 1.3443 0.1083 27 1 2.9876 4.9175 -0.7775 28 1 3.7839 -3.5008 1.7460 29 1 2.0247 -0.6790 4.4601 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133575168.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:26:13 Heat of formation + Delta-G solvation = -38.325255 kcal Electronic energy + Delta-G solvation = -17872.622277 eV Core-core repulsion = 14624.759266 eV Total energy + Delta-G solvation = -3247.863011 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 252.077 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -50.16890 -49.86359 -40.58421 -38.49143 -37.07857 -34.73055 -31.63940 -31.51506 -29.26491 -27.14287 -25.04058 -24.02964 -22.69689 -20.62394 -18.91363 -18.32204 -17.58243 -17.48899 -17.13074 -16.81090 -16.57700 -16.34409 -15.79193 -15.35501 -14.98159 -14.84085 -14.61180 -14.50009 -14.05493 -13.55098 -13.49612 -13.22081 -12.98921 -12.86721 -12.69027 -12.57268 -12.36394 -12.06181 -11.38152 -10.64285 -9.93549 -9.86534 -9.37367 -8.21802 -6.31728 -0.67775 -0.14594 1.42563 1.43610 1.45649 1.55434 1.57513 2.34716 2.40247 2.51701 2.91898 2.97343 3.12431 3.36473 3.70818 3.77879 4.18555 4.27958 4.54823 4.61057 4.73460 4.83876 4.86981 4.98715 5.16505 5.17047 5.43727 5.64573 6.00228 6.01485 6.28874 6.54229 6.81423 7.37224 8.89622 Molecular weight = 252.08amu Principal moments of inertia in cm(-1) A = 0.033669 B = 0.005788 C = 0.005474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.433978 B = 4836.751598 C = 5114.198836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.517 5.517 3 C 0.208 3.792 4 C -0.525 4.525 5 H 0.066 0.934 6 C 0.004 3.996 7 N -0.931 5.931 8 Si 0.970 3.030 9 H -0.262 1.262 10 H -0.278 1.278 11 H -0.280 1.280 12 C 0.046 3.954 13 C 0.135 3.865 14 F -0.123 7.123 15 C -0.085 4.085 16 C 0.026 3.974 17 C 0.289 3.711 18 N -0.436 5.436 19 C -0.090 4.090 20 C 0.078 3.922 21 F -0.134 7.134 22 H 0.028 0.972 23 H 0.072 0.928 24 H 0.081 0.919 25 H -0.008 1.008 26 H 0.001 0.999 27 H 0.265 0.735 28 H 0.187 0.813 29 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.948 -11.817 5.847 13.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.238 5.238 3 C 0.084 3.916 4 C -0.563 4.563 5 H 0.085 0.915 6 C -0.194 4.194 7 N -0.572 5.572 8 Si 0.795 3.205 9 H -0.186 1.186 10 H -0.204 1.204 11 H -0.206 1.206 12 C -0.052 4.052 13 C 0.114 3.886 14 F -0.101 7.101 15 C -0.106 4.106 16 C 0.022 3.978 17 C -0.026 4.026 18 N -0.111 5.111 19 C -0.112 4.112 20 C 0.056 3.944 21 F -0.112 7.112 22 H 0.047 0.953 23 H 0.091 0.909 24 H 0.099 0.901 25 H 0.010 0.990 26 H 0.019 0.981 27 H 0.074 0.926 28 H 0.204 0.796 29 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -1.129 -12.760 6.743 14.477 hybrid contribution -0.568 1.755 -0.631 1.950 sum -1.697 -11.005 6.113 12.703 Atomic orbital electron populations 1.22347 0.84807 1.02141 1.01527 1.59619 1.09680 1.16692 1.37822 1.19558 0.93551 0.81822 0.96708 1.21426 1.35257 0.97501 1.02150 0.91547 1.25875 0.94909 0.97965 1.00653 1.70085 1.39076 1.11934 1.36064 0.85321 0.78038 0.78233 0.78954 1.18599 1.20397 1.20567 1.19697 0.99992 0.95983 0.89563 1.17060 0.98353 0.92956 0.80194 1.91539 1.92242 1.89020 1.37288 1.21257 0.99698 1.01270 0.88424 1.15108 1.00763 0.94074 0.87863 1.25002 0.92789 0.92608 0.92210 1.81319 1.09477 1.09725 1.10543 1.21214 0.96655 0.93483 0.99839 1.18184 0.96837 0.85591 0.93776 1.91516 1.75182 1.49254 1.95289 0.95294 0.90943 0.90062 0.98998 0.98127 0.92600 0.79561 0.80754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.39 9.12 127.69 1.16 2.56 15 2 N -0.52 -21.72 4.53 -723.92 -3.28 -25.00 15 3 C 0.21 10.77 4.23 85.56 0.36 11.13 15 4 C -0.53 -29.08 8.46 25.60 0.22 -28.86 15 5 H 0.07 3.60 7.12 -2.91 -0.02 3.58 15 6 C 0.00 0.25 5.46 84.65 0.46 0.71 15 7 N -0.93 -55.05 13.29 21.45 0.28 -54.76 15 8 Si 0.97 43.49 29.54 68.60 2.03 45.52 15 9 H -0.26 -11.25 7.11 99.48 0.71 -10.55 15 10 H -0.28 -12.14 7.11 99.48 0.71 -11.44 15 11 H -0.28 -12.33 7.11 99.48 0.71 -11.62 15 12 C 0.05 1.55 4.69 38.41 0.18 1.73 15 13 C 0.14 3.77 7.30 22.43 0.16 3.94 15 14 F -0.12 -3.83 17.07 44.97 0.77 -3.07 15 15 C -0.09 -1.62 9.72 22.56 0.22 -1.40 15 16 C 0.03 0.48 5.74 -21.28 -0.12 0.36 15 17 C 0.29 5.60 15.33 88.33 1.35 6.95 15 18 N -0.44 -10.26 18.54 19.00 0.35 -9.90 15 19 C -0.09 -1.92 9.72 22.56 0.22 -1.70 15 20 C 0.08 2.37 6.68 22.43 0.15 2.52 15 21 F -0.13 -4.82 13.48 44.97 0.61 -4.21 15 22 H 0.03 1.05 6.34 -2.39 -0.02 1.03 15 23 H 0.07 2.85 6.76 -2.39 -0.02 2.83 15 24 H 0.08 2.45 8.14 -2.39 -0.02 2.43 15 25 H -0.01 -0.43 6.35 -2.39 -0.02 -0.44 15 26 H 0.00 0.03 8.06 -2.39 -0.02 0.02 15 27 H 0.27 14.70 8.31 -92.71 -0.77 13.93 15 28 H 0.19 2.29 8.06 -2.91 -0.02 2.26 15 29 H 0.18 2.79 8.06 -2.91 -0.02 2.76 15 Total: -1.00 -65.02 271.39 6.32 -58.70 By element: Atomic # 1 Polarization: -6.39 SS G_CDS: 1.20 Total: -5.20 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: 4.37 Total: -2.07 kcal Atomic # 7 Polarization: -87.03 SS G_CDS: -2.64 Total: -89.67 kcal Atomic # 9 Polarization: -8.65 SS G_CDS: 1.37 Total: -7.28 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -65.02 6.32 -58.70 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133575168.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.372 kcal (2) G-P(sol) polarization free energy of solvation -65.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds