Wall clock time and date at job start Sun Mar 29 2020 23:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34223 * 117.00098 * 2 1 4 4 O 1.20820 * 120.00563 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99957 * 179.97438 * 3 2 1 6 6 H 1.09001 * 115.54851 * 325.59206 * 5 3 2 7 7 C 1.53002 * 117.49688 * 111.25336 * 5 3 2 8 8 C 1.52998 * 117.52181 * 179.88320 * 5 3 2 9 9 H 1.08999 * 117.49566 * 0.02562 * 8 5 3 10 10 C 1.50702 * 117.49694 * 145.02791 * 8 5 3 11 11 O 1.21284 * 120.00399 * 0.02562 * 10 8 5 12 12 N 1.34777 * 119.99605 * 180.02562 * 10 8 5 13 13 C 1.37099 * 119.99936 * 180.02562 * 12 10 8 14 14 H 1.07995 * 119.99867 * 16.13826 * 13 12 10 15 15 C 1.38954 * 119.99960 * 196.14573 * 13 12 10 16 16 N 1.31404 * 120.00011 * 21.78299 * 15 13 12 17 17 Si 1.86798 * 119.99836 * 201.78937 * 15 13 12 18 18 H 1.48501 * 109.47466 * 85.41266 * 17 15 13 19 19 H 1.48505 * 109.46923 * 205.41825 * 17 15 13 20 20 H 1.48505 * 109.46985 * 325.41208 * 17 15 13 21 21 C 1.46506 * 120.00139 * 359.97438 * 12 10 8 22 22 C 1.47199 * 109.46737 * 83.95667 * 21 12 10 23 23 N 6.86015 * 108.88540 * 14.13756 * 2 1 3 24 24 H 1.09002 * 109.46896 * 59.99281 * 1 2 3 25 25 H 1.08994 * 109.47711 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.47099 * 300.00171 * 1 2 3 27 27 H 1.08997 * 117.49709 * 215.00277 * 7 5 3 28 28 H 1.08992 * 117.49752 * 0.02606 * 7 5 3 29 29 H 0.97002 * 120.00298 * 179.97438 * 16 15 13 30 30 H 1.08998 * 109.47172 * 203.94955 * 21 12 10 31 31 H 1.08997 * 109.46988 * 323.95298 * 21 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 1 4.0781 0.4892 0.5567 7 6 4.2466 1.8028 -1.2641 8 6 4.2014 2.6667 -0.0022 9 1 3.5307 3.5259 -0.0040 10 6 5.4864 2.8468 0.7642 11 8 5.9785 1.9072 1.3525 12 7 6.0888 4.0520 0.7960 13 6 7.2581 4.2158 1.4928 14 1 7.8329 3.3524 1.7935 15 6 7.7035 5.4927 1.8122 16 7 6.8547 6.4952 1.8468 17 14 9.5091 5.7841 2.1923 18 1 10.2521 6.0056 0.9257 19 1 9.6450 6.9804 3.0617 20 1 10.0654 4.5981 2.8916 21 6 5.4948 5.1869 0.0849 22 6 4.4655 5.8119 0.9315 23 7 3.6725 6.2943 1.5854 24 1 -0.3633 0.5140 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 5.2058 1.3647 -1.5400 28 1 3.6056 2.0935 -2.0963 29 1 7.1655 7.3865 2.0701 30 1 6.2699 5.9182 -0.1442 31 1 5.0399 4.8371 -0.8418 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170759952.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:28:23 Heat of formation + Delta-G solvation = -50.820633 kcal Electronic energy + Delta-G solvation = -18235.346331 eV Core-core repulsion = 15098.028995 eV Total energy + Delta-G solvation = -3137.317336 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.094 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.57749 -39.09940 -36.88021 -36.00431 -35.25516 -34.26465 -31.86574 -28.27700 -27.52984 -25.83095 -24.26923 -22.93778 -20.51638 -18.84260 -18.00846 -17.89647 -16.85746 -16.33467 -16.28857 -15.87256 -14.95728 -14.38989 -14.10528 -13.66528 -13.38662 -13.16813 -13.00445 -12.50433 -12.11706 -11.98068 -11.90410 -11.63186 -11.28439 -11.20317 -10.82673 -10.62125 -10.59317 -10.52751 -10.41044 -10.32270 -10.16836 -9.30738 -8.71582 -8.11276 -6.55302 -4.03779 2.15040 2.63158 3.04638 3.20489 3.24228 3.33379 3.68931 3.98009 4.08515 4.13671 4.57572 4.78233 4.82524 4.97653 5.02855 5.09973 5.13155 5.24321 5.33227 5.44762 5.66856 5.75434 6.07273 6.10089 6.20419 6.37762 6.51231 7.42883 7.80129 7.84177 8.22244 8.74801 8.93359 9.13773 9.66769 10.50552 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.035155 B = 0.005743 C = 0.005217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.272911 B = 4873.910072 C = 5365.908101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.355 6.355 3 C 0.494 3.506 4 O -0.505 6.505 5 C -0.144 4.144 6 H 0.148 0.852 7 C -0.122 4.122 8 C -0.141 4.141 9 H 0.126 0.874 10 C 0.480 3.520 11 O -0.571 6.571 12 N -0.433 5.433 13 C -0.315 4.315 14 H 0.111 0.889 15 C 0.033 3.967 16 N -0.874 5.874 17 Si 0.930 3.070 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.269 1.269 21 C 0.220 3.780 22 C 0.242 3.758 23 N -0.468 5.468 24 H 0.062 0.938 25 H 0.100 0.900 26 H 0.062 0.938 27 H 0.117 0.883 28 H 0.105 0.895 29 H 0.275 0.725 30 H 0.131 0.869 31 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.450 -7.544 -8.906 12.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.271 6.271 3 C 0.337 3.663 4 O -0.393 6.393 5 C -0.164 4.164 6 H 0.166 0.834 7 C -0.160 4.160 8 C -0.162 4.162 9 H 0.144 0.856 10 C 0.268 3.732 11 O -0.455 6.455 12 N -0.152 5.152 13 C -0.442 4.442 14 H 0.129 0.871 15 C -0.172 4.172 16 N -0.512 5.512 17 Si 0.756 3.244 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.193 1.193 21 C 0.092 3.908 22 C -0.076 4.076 23 N -0.148 5.148 24 H 0.080 0.920 25 H 0.118 0.882 26 H 0.081 0.919 27 H 0.135 0.865 28 H 0.124 0.876 29 H 0.085 0.915 30 H 0.149 0.851 31 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.572 -6.781 -7.583 12.111 hybrid contribution 0.779 0.351 0.205 0.879 sum -5.793 -6.429 -7.379 11.373 Atomic orbital electron populations 1.23260 0.76543 1.03512 1.02568 1.86498 1.23146 1.33299 1.84192 1.22732 0.90555 0.81154 0.71872 1.90675 1.66910 1.36379 1.45288 1.21620 0.87406 1.01162 1.06198 0.83433 1.23054 1.02318 1.00563 0.90055 1.22443 0.98985 0.94028 1.00749 0.85590 1.18964 0.84787 0.84483 0.84971 1.90545 1.66060 1.40352 1.48502 1.43529 1.21486 1.05740 1.44426 1.19768 0.96406 0.94151 1.33885 0.87112 1.25304 1.00216 0.95391 0.96254 1.69901 1.33815 1.01728 1.45782 0.85872 0.81949 0.78091 0.78458 1.19983 1.21082 1.19334 1.18830 0.92071 0.90137 0.89720 1.29284 0.91726 0.92854 0.93768 1.80880 1.15010 1.09962 1.08932 0.91965 0.88154 0.91895 0.86466 0.87641 0.91469 0.85113 0.89609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 101.05 1.07 1.42 16 2 O -0.35 -4.85 10.57 -39.24 -0.41 -5.26 16 3 C 0.49 7.86 7.74 36.01 0.28 8.14 16 4 O -0.51 -9.29 16.01 -18.75 -0.30 -9.59 16 5 C -0.14 -2.30 5.81 -91.77 -0.53 -2.84 16 6 H 0.15 2.40 7.67 -51.93 -0.40 2.00 16 7 C -0.12 -1.65 9.94 -26.73 -0.27 -1.91 16 8 C -0.14 -2.51 4.32 -91.77 -0.40 -2.91 16 9 H 0.13 2.33 6.24 -51.93 -0.32 2.00 16 10 C 0.48 10.75 7.35 -10.98 -0.08 10.67 16 11 O -0.57 -14.55 15.90 5.55 0.09 -14.46 16 12 N -0.43 -10.01 2.60 -117.93 -0.31 -10.32 16 13 C -0.32 -7.98 9.35 -14.93 -0.14 -8.12 16 14 H 0.11 2.95 7.37 -52.49 -0.39 2.56 16 15 C 0.03 0.79 4.87 -17.47 -0.09 0.70 16 16 N -0.87 -21.83 9.47 55.50 0.53 -21.31 16 17 Si 0.93 19.26 29.60 -169.99 -5.03 14.23 16 18 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 19 H -0.29 -5.99 7.11 56.52 0.40 -5.59 16 20 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 21 C 0.22 4.38 4.80 -6.83 -0.03 4.34 16 22 C 0.24 5.49 12.89 -20.78 -0.27 5.22 16 23 N -0.47 -11.53 18.53 42.13 0.78 -10.75 16 24 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 25 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 27 H 0.12 1.46 8.14 -51.93 -0.42 1.04 16 28 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 30 H 0.13 2.63 6.34 -51.93 -0.33 2.30 16 31 H 0.09 1.32 6.99 -51.93 -0.36 0.96 16 LS Contribution 285.23 15.07 4.30 4.30 Total: -1.00 -31.93 285.23 -3.87 -35.80 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -3.05 Total: 2.64 kcal Atomic # 6 Polarization: 15.18 SS G_CDS: -0.46 Total: 14.72 kcal Atomic # 7 Polarization: -43.37 SS G_CDS: 1.00 Total: -42.37 kcal Atomic # 8 Polarization: -28.69 SS G_CDS: -0.63 Total: -29.31 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.03 Total: 14.23 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.93 -3.87 -35.80 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170759952.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.021 kcal (2) G-P(sol) polarization free energy of solvation -31.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds