Wall clock time and date at job start Sun Mar 29 2020 23:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34223 * 117.00098 * 2 1 4 4 O 1.20820 * 120.00563 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99957 * 179.97438 * 3 2 1 6 6 H 1.09001 * 115.54851 * 325.59206 * 5 3 2 7 7 C 1.53002 * 117.49688 * 111.25336 * 5 3 2 8 8 C 1.52998 * 117.52181 * 179.88320 * 5 3 2 9 9 H 1.08999 * 117.49566 * 0.02562 * 8 5 3 10 10 C 1.50702 * 117.49694 * 145.02791 * 8 5 3 11 11 O 1.21284 * 120.00399 * 0.02562 * 10 8 5 12 12 N 1.34777 * 119.99605 * 180.02562 * 10 8 5 13 13 C 1.37099 * 119.99936 * 180.02562 * 12 10 8 14 14 H 1.07995 * 119.99867 * 16.13826 * 13 12 10 15 15 C 1.38954 * 119.99960 * 196.14573 * 13 12 10 16 16 N 1.31404 * 120.00011 * 21.78299 * 15 13 12 17 17 Si 1.86798 * 119.99836 * 201.78937 * 15 13 12 18 18 H 1.48501 * 109.47466 * 85.41266 * 17 15 13 19 19 H 1.48505 * 109.46923 * 205.41825 * 17 15 13 20 20 H 1.48505 * 109.46985 * 325.41208 * 17 15 13 21 21 C 1.46506 * 120.00139 * 359.97438 * 12 10 8 22 22 C 1.47199 * 109.46737 * 83.95667 * 21 12 10 23 23 N 6.86015 * 108.88540 * 14.13756 * 2 1 3 24 24 H 1.09002 * 109.46896 * 59.99281 * 1 2 3 25 25 H 1.08994 * 109.47711 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.47099 * 300.00171 * 1 2 3 27 27 H 1.08997 * 117.49709 * 215.00277 * 7 5 3 28 28 H 1.08992 * 117.49752 * 0.02606 * 7 5 3 29 29 H 0.97002 * 120.00298 * 179.97438 * 16 15 13 30 30 H 1.08998 * 109.47172 * 203.94955 * 21 12 10 31 31 H 1.08997 * 109.46988 * 323.95298 * 21 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 1 4.0781 0.4892 0.5567 7 6 4.2466 1.8028 -1.2641 8 6 4.2014 2.6667 -0.0022 9 1 3.5307 3.5259 -0.0040 10 6 5.4864 2.8468 0.7642 11 8 5.9785 1.9072 1.3525 12 7 6.0888 4.0520 0.7960 13 6 7.2581 4.2158 1.4928 14 1 7.8329 3.3524 1.7935 15 6 7.7035 5.4927 1.8122 16 7 6.8547 6.4952 1.8468 17 14 9.5091 5.7841 2.1923 18 1 10.2521 6.0056 0.9257 19 1 9.6450 6.9804 3.0617 20 1 10.0654 4.5981 2.8916 21 6 5.4948 5.1869 0.0849 22 6 4.4655 5.8119 0.9315 23 7 3.6725 6.2943 1.5854 24 1 -0.3633 0.5140 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 5.2058 1.3647 -1.5400 28 1 3.6056 2.0935 -2.0963 29 1 7.1655 7.3865 2.0701 30 1 6.2699 5.9182 -0.1442 31 1 5.0399 4.8371 -0.8418 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170759952.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:28:23 Heat of formation + Delta-G solvation = -71.047957 kcal Electronic energy + Delta-G solvation = -18236.223453 eV Core-core repulsion = 15098.028995 eV Total energy + Delta-G solvation = -3138.194458 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.094 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.82617 -40.69626 -38.20787 -37.58613 -36.76487 -36.07808 -33.72475 -29.38362 -29.11943 -27.46353 -25.54842 -24.38578 -21.73807 -20.41437 -19.77079 -19.28414 -18.18885 -17.95790 -17.43557 -17.32332 -16.63688 -15.99830 -15.57311 -15.16817 -14.83538 -14.73026 -14.35345 -13.89877 -13.69501 -13.42800 -13.37510 -13.05116 -12.90942 -12.90413 -12.33123 -12.22636 -12.11428 -11.88503 -11.82014 -11.58691 -11.57622 -11.12533 -10.49900 -9.96380 -8.41574 -5.97116 0.92024 1.36171 1.49386 1.54155 1.61623 1.76331 1.96780 2.22696 2.35760 2.72620 2.97278 3.07223 3.50618 3.55884 3.77884 3.78914 4.05722 4.23368 4.30238 4.32188 4.56993 4.65137 4.69736 4.88458 4.89801 5.01634 5.26280 5.48675 5.99698 6.36860 6.64131 6.96394 7.08394 7.31965 7.87411 8.62322 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.035155 B = 0.005743 C = 0.005217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.272911 B = 4873.910072 C = 5365.908101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.355 6.355 3 C 0.499 3.501 4 O -0.535 6.535 5 C -0.150 4.150 6 H 0.141 0.859 7 C -0.078 4.078 8 C -0.162 4.162 9 H 0.122 0.878 10 C 0.477 3.523 11 O -0.611 6.611 12 N -0.446 5.446 13 C -0.343 4.343 14 H 0.088 0.912 15 C 0.005 3.995 16 N -0.893 5.893 17 Si 0.991 3.009 18 H -0.256 1.256 19 H -0.287 1.287 20 H -0.277 1.277 21 C 0.221 3.779 22 C 0.255 3.745 23 N -0.509 5.509 24 H 0.068 0.932 25 H 0.137 0.863 26 H 0.056 0.944 27 H 0.132 0.868 28 H 0.140 0.860 29 H 0.276 0.724 30 H 0.131 0.869 31 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.598 -8.161 -10.699 14.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.271 6.271 3 C 0.344 3.656 4 O -0.425 6.425 5 C -0.170 4.170 6 H 0.159 0.841 7 C -0.116 4.116 8 C -0.184 4.184 9 H 0.140 0.860 10 C 0.267 3.733 11 O -0.497 6.497 12 N -0.164 5.164 13 C -0.470 4.470 14 H 0.106 0.894 15 C -0.197 4.197 16 N -0.531 5.531 17 Si 0.815 3.185 18 H -0.181 1.181 19 H -0.213 1.213 20 H -0.202 1.202 21 C 0.095 3.905 22 C -0.063 4.063 23 N -0.190 5.190 24 H 0.087 0.913 25 H 0.155 0.845 26 H 0.075 0.925 27 H 0.150 0.850 28 H 0.158 0.842 29 H 0.086 0.914 30 H 0.148 0.852 31 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -6.736 -7.405 -9.401 13.733 hybrid contribution 0.755 0.446 0.795 1.184 sum -5.981 -6.959 -8.606 12.580 Atomic orbital electron populations 1.23626 0.74362 1.06001 1.02633 1.86484 1.25229 1.31913 1.83503 1.22655 0.90433 0.81353 0.71154 1.90667 1.67472 1.37396 1.46923 1.21640 0.87789 0.99437 1.08120 0.84115 1.23297 1.02989 0.96258 0.89020 1.22164 0.96856 0.95181 1.04182 0.86003 1.19689 0.85598 0.83649 0.84329 1.90511 1.67557 1.41565 1.50086 1.43690 1.21305 1.06793 1.44630 1.19698 0.97788 0.93926 1.35571 0.89436 1.25949 1.03455 0.94695 0.95597 1.69984 1.35072 1.01902 1.46154 0.84972 0.77667 0.77144 0.78704 1.18103 1.21308 1.20212 1.19166 0.91536 0.89283 0.90533 1.29865 0.91321 0.91922 0.93154 1.80874 1.16578 1.11381 1.10147 0.91277 0.84498 0.92523 0.85007 0.84234 0.91421 0.85178 0.84507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.56 113.37 1.20 1.67 16 2 O -0.36 -9.00 10.57 -51.35 -0.54 -9.55 16 3 C 0.50 15.14 7.74 71.24 0.55 15.70 16 4 O -0.53 -19.04 16.01 21.98 0.35 -18.69 16 5 C -0.15 -4.56 5.81 -11.54 -0.07 -4.63 16 6 H 0.14 4.48 7.67 -2.39 -0.02 4.47 16 7 C -0.08 -1.85 9.94 30.60 0.30 -1.55 16 8 C -0.16 -5.58 4.32 -11.54 -0.05 -5.63 16 9 H 0.12 4.34 6.24 -2.39 -0.01 4.32 16 10 C 0.48 21.35 7.35 87.66 0.64 22.00 16 11 O -0.61 -31.67 15.90 -3.04 -0.05 -31.72 16 12 N -0.45 -20.57 2.60 -645.41 -1.68 -22.25 16 13 C -0.34 -17.57 9.35 84.04 0.79 -16.79 16 14 H 0.09 4.81 7.37 -2.91 -0.02 4.79 16 15 C 0.01 0.26 4.87 84.93 0.41 0.68 16 16 N -0.89 -44.43 9.47 21.66 0.21 -44.23 16 17 Si 0.99 39.31 29.60 68.60 2.03 41.34 16 18 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 19 H -0.29 -11.43 7.11 99.48 0.71 -10.73 16 20 H -0.28 -11.28 7.11 99.48 0.71 -10.58 16 21 C 0.22 8.56 4.80 84.57 0.41 8.96 16 22 C 0.26 11.48 12.89 89.45 1.15 12.63 16 23 N -0.51 -25.18 18.53 20.00 0.37 -24.81 16 24 H 0.07 1.15 8.13 -2.39 -0.02 1.13 16 25 H 0.14 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.06 1.09 8.13 -2.38 -0.02 1.07 16 27 H 0.13 2.80 8.14 -2.39 -0.02 2.78 16 28 H 0.14 2.42 8.14 -2.39 -0.02 2.40 16 29 H 0.28 13.21 8.31 -92.71 -0.77 12.44 16 30 H 0.13 5.09 6.34 -2.39 -0.02 5.08 16 31 H 0.14 3.83 6.99 -2.39 -0.02 3.82 16 Total: -1.00 -70.36 285.23 7.19 -63.17 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: 1.17 Total: 13.68 kcal Atomic # 6 Polarization: 27.71 SS G_CDS: 5.34 Total: 33.04 kcal Atomic # 7 Polarization: -90.18 SS G_CDS: -1.10 Total: -91.28 kcal Atomic # 8 Polarization: -59.71 SS G_CDS: -0.24 Total: -59.95 kcal Atomic # 14 Polarization: 39.31 SS G_CDS: 2.03 Total: 41.34 kcal Total: -70.36 7.19 -63.17 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170759952.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.881 kcal (2) G-P(sol) polarization free energy of solvation -70.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds