Wall clock time and date at job start Sun Mar 29 2020 23:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45193 * 109.47336 * 2 1 4 4 C 1.34798 * 117.00076 * 179.97438 * 3 2 1 5 5 O 1.21540 * 119.99601 * 0.02562 * 4 3 2 6 6 C 1.47190 * 120.00073 * 180.02562 * 4 3 2 7 7 C 1.39664 * 121.30356 * 180.02562 * 6 4 3 8 8 C 1.39976 * 117.98639 * 179.97438 * 7 6 4 9 9 C 1.50695 * 119.71786 * 179.97438 * 8 7 6 10 10 N 1.30724 * 120.56181 * 0.02562 * 8 7 6 11 11 N 1.28264 * 122.99635 * 359.97438 * 10 8 7 12 12 C 1.36452 * 119.00761 * 179.71969 * 11 10 8 13 13 H 1.08003 * 119.99717 * 180.02562 * 12 11 10 14 14 C 1.39519 * 120.00470 * 0.02562 * 12 11 10 15 15 N 1.30954 * 119.99710 * 359.97438 * 14 12 11 16 16 Si 1.86790 * 120.00449 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47290 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47541 * 119.99906 * 16 14 12 19 19 H 1.48503 * 109.47239 * 239.99879 * 16 14 12 20 20 C 1.34670 * 121.97877 * 0.02562 * 11 10 8 21 21 O 1.21840 * 120.45602 * 179.97438 * 20 11 10 22 22 H 1.09004 * 109.46678 * 59.99942 * 1 2 3 23 23 H 1.08999 * 109.47010 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47116 * 299.99991 * 1 2 3 25 25 H 1.09006 * 109.46962 * 240.00292 * 2 1 3 26 26 H 1.09001 * 109.46811 * 120.00813 * 2 1 3 27 27 H 1.07998 * 121.00496 * 359.95775 * 7 6 4 28 28 H 1.09001 * 109.46925 * 180.02562 * 9 8 7 29 29 H 1.09000 * 109.47330 * 300.02159 * 9 8 7 30 30 H 1.09004 * 109.47324 * 60.02550 * 9 8 7 31 31 H 0.96994 * 120.00234 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3504 1.5455 0.0005 5 8 4.0907 0.5815 0.0005 6 6 3.9131 2.9056 0.0011 7 6 5.2932 3.1200 0.0012 8 6 5.7525 4.4422 0.0012 9 6 7.2339 4.7184 0.0018 10 7 4.9073 5.4395 0.0017 11 7 3.6350 5.2768 0.0017 12 6 2.8273 6.3766 0.0081 13 1 1.7538 6.2582 0.0086 14 6 3.3882 7.6541 0.0140 15 7 4.6898 7.7977 0.0139 16 14 2.2825 9.1596 0.0220 17 1 0.8610 8.7299 0.0202 18 1 2.5544 9.9671 1.2383 19 1 2.5530 9.9789 -1.1867 20 6 3.0724 4.0533 0.0017 21 8 1.8602 3.9309 0.0022 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5138 -0.8901 26 1 1.8933 -0.5140 0.8899 27 1 5.9850 2.2907 0.0014 28 1 7.4027 5.7953 0.0022 29 1 7.6850 4.2797 0.8919 30 1 7.6857 4.2802 -0.8881 31 1 5.0798 8.6858 0.0183 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225961863.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:23:04 Heat of formation + Delta-G solvation = -72.815144 kcal Electronic energy + Delta-G solvation = -18551.025075 eV Core-core repulsion = 15412.753985 eV Total energy + Delta-G solvation = -3138.271089 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.094 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.73387 -41.08928 -38.39684 -37.57833 -36.61333 -34.31189 -32.85884 -32.15485 -29.94569 -27.36767 -26.43800 -24.21666 -23.76803 -22.31607 -20.71201 -19.32013 -18.02703 -17.60143 -17.52047 -17.12404 -17.03762 -16.94891 -15.92637 -15.02929 -14.76019 -14.31744 -14.27135 -13.92724 -13.70583 -13.50601 -13.46775 -13.20707 -12.90995 -12.87889 -12.71366 -12.48682 -12.09156 -11.69131 -11.56980 -11.55178 -11.48041 -10.83240 -10.25936 -9.41001 -8.74586 -6.61337 -0.50842 0.92555 1.36788 1.41362 1.59066 1.60099 1.81786 1.97841 2.33992 2.49122 3.12141 3.51324 3.94592 3.97818 4.10882 4.18558 4.28972 4.38736 4.64049 4.79209 4.85358 4.87890 4.98833 5.06717 5.08149 5.17280 5.20029 5.44806 5.51425 5.74193 5.91886 6.41392 6.85395 7.15752 7.87695 8.06718 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.023317 B = 0.007450 C = 0.005675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.552572 B = 3757.515966 C = 4932.312365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.047 3.953 3 O -0.350 6.350 4 C 0.537 3.463 5 O -0.553 6.553 6 C -0.326 4.326 7 C -0.056 4.056 8 C -0.038 4.038 9 C -0.059 4.059 10 N -0.223 5.223 11 N -0.118 5.118 12 C -0.280 4.280 13 H 0.138 0.862 14 C 0.002 3.998 15 N -0.731 5.731 16 Si 1.023 2.977 17 H -0.257 1.257 18 H -0.254 1.254 19 H -0.254 1.254 20 C 0.416 3.584 21 O -0.584 6.584 22 H 0.059 0.941 23 H 0.113 0.887 24 H 0.059 0.941 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.152 0.848 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.141 -1.264 0.014 1.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.027 4.027 3 O -0.266 6.266 4 C 0.387 3.613 5 O -0.448 6.448 6 C -0.338 4.338 7 C -0.084 4.084 8 C -0.179 4.179 9 C -0.117 4.117 10 N -0.068 5.068 11 N 0.081 4.919 12 C -0.422 4.422 13 H 0.155 0.845 14 C -0.218 4.218 15 N -0.357 5.357 16 Si 0.839 3.161 17 H -0.181 1.181 18 H -0.178 1.178 19 H -0.178 1.178 20 C 0.226 3.774 21 O -0.472 6.472 22 H 0.078 0.922 23 H 0.131 0.869 24 H 0.078 0.922 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.170 0.830 28 H 0.089 0.911 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.022 -0.861 0.011 0.861 hybrid contribution -0.384 -0.696 0.000 0.795 sum -0.406 -1.557 0.011 1.609 Atomic orbital electron populations 1.21783 0.90509 1.04363 1.03089 1.23343 0.97283 0.79616 1.02431 1.86857 1.23096 1.32989 1.83625 1.20321 0.80680 0.88564 0.71742 1.90682 1.60913 1.42292 1.50933 1.19868 0.94664 0.90051 1.29254 1.22140 0.92810 0.97986 0.95494 1.22145 0.98507 0.87808 1.09411 1.20291 0.85047 1.03152 1.03218 1.72116 0.89006 1.29631 1.16025 1.43459 1.04186 1.07872 1.36371 1.21573 0.93041 0.83276 1.44280 0.84499 1.27034 0.98330 1.02098 0.94321 1.70178 1.12072 1.27489 1.25981 0.84468 0.77705 0.74034 0.79848 1.18051 1.17794 1.17801 1.18227 0.89600 0.84683 0.84853 1.90714 1.14329 1.85469 1.56691 0.92162 0.86884 0.92157 0.91196 0.91196 0.83045 0.91139 0.89688 0.89683 0.88784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.70 10.29 71.98 0.74 -2.96 16 2 C 0.05 1.59 6.20 71.98 0.45 2.04 16 3 O -0.35 -16.33 8.55 -50.40 -0.43 -16.77 16 4 C 0.54 26.39 7.90 70.17 0.55 26.94 16 5 O -0.55 -26.55 16.27 19.71 0.32 -26.23 16 6 C -0.33 -16.72 5.96 -19.58 -0.12 -16.84 16 7 C -0.06 -2.49 9.50 23.04 0.22 -2.27 16 8 C -0.04 -1.68 6.87 43.14 0.30 -1.38 16 9 C -0.06 -1.87 10.16 71.23 0.72 -1.14 16 10 N -0.22 -11.20 8.02 -47.38 -0.38 -11.58 16 11 N -0.12 -6.40 3.34 -314.55 -1.05 -7.46 16 12 C -0.28 -14.28 9.58 84.28 0.81 -13.47 16 13 H 0.14 7.00 7.09 -2.91 -0.02 6.98 16 14 C 0.00 0.11 5.48 85.13 0.47 0.57 16 15 N -0.73 -32.86 11.35 21.75 0.25 -32.61 16 16 Si 1.02 32.83 29.55 68.60 2.03 34.85 16 17 H -0.26 -8.34 7.11 99.48 0.71 -7.63 16 18 H -0.25 -7.62 7.11 99.48 0.71 -6.91 16 19 H -0.25 -7.62 7.11 99.48 0.71 -6.92 16 20 C 0.42 23.29 7.45 85.26 0.64 23.93 16 21 O -0.58 -34.81 14.88 15.07 0.22 -34.58 16 22 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 23 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 24 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 26 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 27 H 0.15 5.87 7.78 -2.91 -0.02 5.85 16 28 H 0.07 2.32 8.11 -2.39 -0.02 2.30 16 29 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.08 2.29 8.14 -2.38 -0.02 2.27 16 31 H 0.30 11.64 8.30 -92.71 -0.77 10.87 16 Total: -1.00 -67.07 280.94 6.88 -60.18 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: 1.15 Total: 18.78 kcal Atomic # 6 Polarization: 10.64 SS G_CDS: 4.77 Total: 15.41 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: -1.18 Total: -51.65 kcal Atomic # 8 Polarization: -77.69 SS G_CDS: 0.11 Total: -77.58 kcal Atomic # 14 Polarization: 32.83 SS G_CDS: 2.03 Total: 34.85 kcal Total: -67.07 6.88 -60.18 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225961863.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.631 kcal (2) G-P(sol) polarization free energy of solvation -67.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds