Wall clock time and date at job start Sun Mar 29 2020 22:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47089 * 2 1 4 4 C 1.50693 * 109.47173 * 239.99564 * 2 1 3 5 5 H 1.08001 * 120.00479 * 275.00476 * 4 2 1 6 6 C 1.37880 * 119.99945 * 95.00721 * 4 2 1 7 7 N 1.31509 * 120.00374 * 184.91770 * 6 4 2 8 8 Si 1.86801 * 119.99896 * 4.91295 * 6 4 2 9 9 H 1.48494 * 109.47232 * 84.83711 * 8 6 4 10 10 H 1.48506 * 109.47183 * 204.83762 * 8 6 4 11 11 H 1.48505 * 109.47178 * 324.83555 * 8 6 4 12 12 N 1.46501 * 109.46863 * 119.99718 * 2 1 3 13 13 C 1.34774 * 120.00257 * 275.00355 * 12 2 1 14 14 O 1.21610 * 120.00130 * 359.72214 * 13 12 2 15 15 C 1.47390 * 120.00185 * 179.72451 * 13 12 2 16 16 C 1.39972 * 120.61313 * 359.72494 * 15 13 12 17 17 C 1.38329 * 118.37388 * 179.73616 * 16 15 13 18 18 C 1.38400 * 119.52360 * 0.53269 * 17 16 15 19 19 N 1.31814 * 121.22987 * 359.72659 * 18 17 16 20 20 C 1.32512 * 121.76410 * 359.97438 * 19 18 17 21 21 S 1.76204 * 119.83199 * 180.02562 * 20 19 18 22 22 H 1.09003 * 109.47221 * 175.03592 * 1 2 3 23 23 H 1.08998 * 109.47478 * 295.04108 * 1 2 3 24 24 H 1.09008 * 109.46902 * 55.03725 * 1 2 3 25 25 H 0.97002 * 120.00804 * 180.02562 * 7 6 4 26 26 H 0.96999 * 119.99994 * 94.72107 * 12 2 1 27 27 H 1.08007 * 120.80994 * 359.97438 * 16 15 13 28 28 H 1.07999 * 120.23772 * 180.25562 * 17 16 15 29 29 H 1.08003 * 119.38676 * 179.74484 * 18 17 16 30 30 H 1.40999 * 100.00197 * 269.97767 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.1354 -1.7855 -1.2289 6 6 2.3604 0.0120 -2.3580 7 7 2.7060 -0.6132 -3.4621 8 14 2.3137 1.8790 -2.3174 9 1 3.5993 2.3947 -1.7821 10 1 2.1060 2.3990 -3.6928 11 1 1.1988 2.3275 -1.4450 12 7 2.0183 -0.6906 1.1962 13 6 2.1469 -0.0182 2.3572 14 8 1.8625 1.1629 2.4106 15 6 2.6324 -0.7145 3.5622 16 6 2.9580 -2.0750 3.5167 17 6 3.4145 -2.6807 4.6735 18 6 3.5252 -1.9364 5.8351 19 7 3.2086 -0.6571 5.8598 20 6 2.7720 -0.0256 4.7797 21 16 2.3638 1.6862 4.8702 22 1 -0.3634 -1.0238 -0.0889 23 1 -0.3634 0.4350 0.9310 24 1 -0.3633 0.5889 -0.8423 25 1 2.9372 -0.1050 -4.2553 26 1 2.2451 -1.6327 1.1537 27 1 2.8590 -2.6372 2.5998 28 1 3.6783 -3.7280 4.6714 29 1 3.8779 -2.4125 6.7380 30 1 1.0004 1.5947 5.2179 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263640997.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:53 Heat of formation + Delta-G solvation = 12.334399 kcal Electronic energy + Delta-G solvation = -16011.689085 eV Core-core repulsion = 13319.863228 eV Total energy + Delta-G solvation = -2691.825857 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 252.067 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.40837 -38.53860 -34.95686 -33.12033 -32.19239 -31.51505 -29.54962 -25.38210 -24.64427 -23.85152 -21.28292 -19.72329 -18.56242 -17.73910 -16.68993 -16.45021 -15.88202 -15.18673 -14.83476 -14.50529 -13.99761 -13.72101 -13.43252 -13.04514 -12.53832 -12.47242 -12.37551 -11.53482 -11.14001 -11.06263 -10.84981 -10.62397 -10.04422 -9.94744 -9.86313 -9.55774 -9.25615 -9.17798 -8.73247 -8.12580 -7.17856 -6.26741 -4.31236 0.40666 0.88449 1.64000 2.65534 3.20023 3.26442 3.34059 3.41261 3.74242 3.91052 4.30672 4.39603 4.58050 4.72043 4.89027 5.01858 5.14718 5.44787 5.71399 5.84621 6.23295 6.31397 6.47154 6.63248 6.89041 7.13395 7.32685 7.49081 7.54108 8.07564 8.48962 8.72390 8.88040 9.34950 10.84709 Molecular weight = 252.07amu Principal moments of inertia in cm(-1) A = 0.029529 B = 0.006415 C = 0.005691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.982653 B = 4364.013349 C = 4919.028158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.232 3.768 3 H 0.054 0.946 4 C -0.532 4.532 5 H 0.078 0.922 6 C 0.082 3.918 7 N -0.888 5.888 8 Si 0.874 3.126 9 H -0.271 1.271 10 H -0.286 1.286 11 H -0.259 1.259 12 N -0.696 5.696 13 C 0.532 3.468 14 O -0.511 6.511 15 C -0.129 4.129 16 C -0.051 4.051 17 C -0.156 4.156 18 C 0.105 3.895 19 N -0.452 5.452 20 C 0.147 3.853 21 S -0.068 6.068 22 H 0.046 0.954 23 H 0.028 0.972 24 H 0.053 0.947 25 H 0.268 0.732 26 H 0.389 0.611 27 H 0.148 0.852 28 H 0.145 0.855 29 H 0.163 0.837 30 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.178 -4.012 15.425 15.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.130 3.870 3 H 0.072 0.928 4 C -0.570 4.570 5 H 0.096 0.904 6 C -0.123 4.123 7 N -0.524 5.524 8 Si 0.700 3.300 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.184 1.184 12 N -0.346 5.346 13 C 0.314 3.686 14 O -0.387 6.387 15 C -0.138 4.138 16 C -0.079 4.079 17 C -0.175 4.175 18 C -0.057 4.057 19 N -0.163 5.163 20 C -0.102 4.102 21 S 0.089 5.911 22 H 0.065 0.935 23 H 0.048 0.952 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.223 0.777 27 H 0.166 0.834 28 H 0.163 0.837 29 H 0.181 0.819 30 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.102 -1.657 15.990 16.076 hybrid contribution -0.509 -1.336 -0.743 1.611 sum -0.407 -2.993 15.247 15.543 Atomic orbital electron populations 1.22223 0.98527 1.00559 0.99314 1.19161 0.90890 0.94533 0.82401 0.92831 1.20980 1.45523 0.95572 0.94934 0.90381 1.24937 0.93469 0.98734 0.95111 1.69873 1.44511 1.36296 1.01715 0.86897 0.79999 0.85688 0.77398 1.19677 1.21190 1.18359 1.46693 1.64652 1.13620 1.09658 1.17941 0.80084 0.87343 0.83195 1.90952 1.49524 1.14167 1.84099 1.21531 1.01111 0.94696 0.96495 1.21955 0.93330 0.93240 0.99347 1.22249 0.99803 1.02013 0.93476 1.23064 0.94847 0.89607 0.98159 1.68331 1.09167 1.09859 1.28900 1.22714 0.99249 0.98355 0.89860 1.86982 1.14239 0.97511 1.92413 0.93474 0.95248 0.92764 0.92178 0.77686 0.83397 0.83700 0.81937 0.93501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.15 9.47 37.16 0.35 -2.79 16 2 C 0.23 5.38 2.22 -69.09 -0.15 5.23 16 3 H 0.05 1.36 4.72 -51.93 -0.25 1.11 16 4 C -0.53 -13.94 9.05 -34.44 -0.31 -14.25 16 5 H 0.08 2.14 8.06 -52.49 -0.42 1.72 16 6 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 7 N -0.89 -25.70 13.96 55.43 0.77 -24.93 16 8 Si 0.87 21.29 26.99 -169.99 -4.59 16.71 16 9 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.26 -6.20 6.82 56.52 0.39 -5.82 16 12 N -0.70 -13.63 5.02 -56.02 -0.28 -13.92 16 13 C 0.53 10.25 7.72 -12.54 -0.10 10.15 16 14 O -0.51 -11.25 13.46 5.27 0.07 -11.18 16 15 C -0.13 -2.04 5.91 -104.64 -0.62 -2.66 16 16 C -0.05 -0.61 9.64 -38.90 -0.37 -0.98 16 17 C -0.16 -1.46 10.09 -39.49 -0.40 -1.86 16 18 C 0.11 1.09 11.16 -17.50 -0.20 0.90 16 19 N -0.45 -6.38 10.33 -11.68 -0.12 -6.50 16 20 C 0.15 2.35 7.09 -16.37 -0.12 2.24 16 21 S -0.07 -1.12 22.91 -107.50 -2.46 -3.58 16 22 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.05 1.17 8.14 -51.92 -0.42 0.74 16 25 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 26 H 0.39 6.56 6.69 -40.82 -0.27 6.28 16 27 H 0.15 1.49 6.51 -52.48 -0.34 1.15 16 28 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 29 H 0.16 1.08 8.06 -52.48 -0.42 0.66 16 30 H 0.10 1.48 9.55 96.90 0.93 2.41 16 LS Contribution 275.89 15.07 4.16 4.16 Total: -1.00 -31.41 275.89 -6.08 -37.49 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -1.62 Total: 3.63 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -2.01 Total: -1.88 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: 0.37 Total: -45.35 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.07 Total: -11.18 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.59 Total: 16.71 kcal Atomic # 16 Polarization: -1.12 SS G_CDS: -2.46 Total: -3.58 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -31.41 -6.08 -37.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263640997.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.824 kcal (2) G-P(sol) polarization free energy of solvation -31.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds