Wall clock time and date at job start Sun Mar 29 2020 22:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86799 * 119.99790 * 2 1 4 4 H 1.48503 * 109.46963 * 240.00195 * 3 2 1 5 5 H 1.48502 * 109.47357 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47101 * 120.00057 * 3 2 1 7 7 C 1.38811 * 120.00003 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99534 * 189.98456 * 7 2 1 9 9 N 1.36937 * 119.99920 * 9.98282 * 7 2 1 10 10 C 1.46497 * 120.00139 * 45.15289 * 9 7 2 11 11 C 1.50705 * 109.46919 * 89.99649 * 10 9 7 12 12 C 1.38613 * 120.42368 * 105.00180 * 11 10 9 13 13 C 1.38667 * 118.43677 * 180.02562 * 12 11 10 14 14 C 1.38187 * 119.19302 * 0.02562 * 13 12 11 15 15 N 1.31880 * 120.77946 * 359.97438 * 14 13 12 16 16 C 1.31980 * 121.70880 * 0.02562 * 15 14 13 17 17 Cl 1.73599 * 119.63540 * 179.97438 * 16 15 14 18 18 C 1.46502 * 120.00018 * 225.14893 * 9 7 2 19 19 C 1.53010 * 117.49473 * 13.72680 * 18 9 7 20 20 C 1.53003 * 117.49869 * 305.10758 * 18 9 7 21 21 H 0.96997 * 119.99768 * 354.92544 * 1 2 3 22 22 H 1.08994 * 109.47060 * 330.00212 * 10 9 7 23 23 H 1.09000 * 109.47339 * 209.99542 * 10 9 7 24 24 H 1.08005 * 120.77814 * 0.02562 * 12 11 10 25 25 H 1.07998 * 120.40156 * 179.97438 * 13 12 11 26 26 H 1.07997 * 119.61017 * 179.72082 * 14 13 12 27 27 H 1.08989 * 115.55235 * 159.43373 * 18 9 7 28 28 H 1.09001 * 117.50098 * 359.97438 * 19 18 9 29 29 H 1.09004 * 117.49238 * 145.02151 * 19 18 9 30 30 H 1.08993 * 117.49975 * 214.97810 * 20 18 9 31 31 H 1.09005 * 117.50011 * 359.97438 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0780 -1.2092 0.1616 9 7 1.3412 -2.3790 -0.2066 10 6 0.3493 -2.4794 -1.2801 11 6 1.0255 -2.9340 -2.5479 12 6 0.8691 -4.2352 -2.9991 13 6 1.5103 -4.6096 -4.1702 14 6 2.2792 -3.6802 -4.8444 15 7 2.4065 -2.4500 -4.3865 16 6 1.8111 -2.0581 -3.2757 17 17 2.0161 -0.4257 -2.7218 18 6 1.6172 -3.5377 0.6463 19 6 2.4074 -3.2948 1.9338 20 6 3.0698 -4.0067 0.7525 21 1 -0.4850 0.8367 0.0743 22 1 -0.1099 -1.5043 -1.4428 23 1 -0.4184 -3.2003 -0.9992 24 1 0.2621 -4.9409 -2.4513 25 1 1.4106 -5.6155 -4.5504 26 1 2.7852 -3.9658 -5.7547 27 1 0.8392 -4.3005 0.6693 28 1 2.7222 -2.2730 2.1460 29 1 2.1490 -3.8980 2.8042 30 1 3.2472 -5.0780 0.8457 31 1 3.8199 -3.4533 0.1874 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263786759.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:08 Heat of formation + Delta-G solvation = 80.510275 kcal Electronic energy + Delta-G solvation = -16774.071126 eV Core-core repulsion = 14083.157891 eV Total energy + Delta-G solvation = -2690.913235 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 252.072 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.59342 -37.01525 -35.51292 -33.87130 -32.26098 -31.12278 -29.58355 -25.83956 -23.93373 -22.93069 -21.37759 -21.31651 -19.86045 -16.93561 -16.24322 -16.13398 -15.39504 -14.62285 -14.46239 -13.85717 -13.78496 -13.23037 -12.75810 -12.66706 -11.89454 -11.74707 -11.18828 -11.06801 -10.88419 -10.63114 -10.57588 -10.36862 -10.07633 -9.81045 -9.66973 -9.43329 -9.11863 -9.01600 -8.31967 -8.09682 -6.44884 -5.87702 -3.49457 1.55905 1.74464 2.78134 3.32342 3.35391 3.44706 4.20246 4.39066 4.95042 5.04783 5.20014 5.28672 5.34490 5.46509 5.62184 5.76185 5.88025 6.06907 6.18373 6.25081 6.36608 6.47313 6.57779 6.60361 6.87309 6.97444 7.07349 7.18288 7.49162 7.78963 8.31942 8.51522 9.10266 9.67625 10.27447 11.13877 Molecular weight = 252.07amu Principal moments of inertia in cm(-1) A = 0.019385 B = 0.012089 C = 0.008705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.067036 B = 2315.560152 C = 3215.758856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.039 3.961 3 Si 0.870 3.130 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.248 4.248 8 H 0.057 0.943 9 N -0.537 5.537 10 C 0.178 3.822 11 C -0.112 4.112 12 C -0.075 4.075 13 C -0.182 4.182 14 C 0.086 3.914 15 N -0.492 5.492 16 C 0.181 3.819 17 Cl 0.002 6.998 18 C 0.129 3.871 19 C -0.191 4.191 20 C -0.228 4.228 21 H 0.259 0.741 22 H 0.118 0.882 23 H 0.041 0.959 24 H 0.131 0.869 25 H 0.128 0.872 26 H 0.150 0.850 27 H 0.088 0.912 28 H 0.100 0.900 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.673 -7.372 -4.698 8.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.162 4.162 3 Si 0.699 3.301 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.378 4.378 8 H 0.074 0.926 9 N -0.252 5.252 10 C 0.052 3.948 11 C -0.118 4.118 12 C -0.102 4.102 13 C -0.202 4.202 14 C -0.071 4.071 15 N -0.203 5.203 16 C 0.017 3.983 17 Cl 0.030 6.970 18 C 0.020 3.980 19 C -0.230 4.230 20 C -0.269 4.269 21 H 0.070 0.930 22 H 0.135 0.865 23 H 0.059 0.941 24 H 0.149 0.851 25 H 0.146 0.854 26 H 0.167 0.833 27 H 0.105 0.895 28 H 0.118 0.882 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.023 -6.419 -5.143 8.289 hybrid contribution 0.236 0.276 0.467 0.592 sum 1.259 -6.143 -4.677 7.823 Atomic orbital electron populations 1.69697 1.05326 1.26264 1.51309 1.25252 0.95031 0.97864 0.98025 0.86806 0.79851 0.84238 0.79250 1.19727 1.21148 1.20078 1.18723 0.90626 0.82990 1.45438 0.92582 1.43186 1.45620 1.07574 1.28819 1.20126 0.89864 1.02868 0.81981 1.21990 0.98010 0.92915 0.98849 1.21441 0.98138 0.95284 0.95379 1.22009 1.00240 1.00721 0.97258 1.22384 0.97306 0.88170 0.99267 1.67079 1.21437 1.18522 1.13311 1.21932 0.94839 0.90499 0.91019 1.98482 1.95589 1.17143 1.85754 1.21136 0.90779 0.92196 0.93904 1.23046 1.06712 1.01568 0.91638 1.23342 1.01099 0.98066 1.04361 0.93028 0.86501 0.94086 0.85116 0.85425 0.83278 0.89473 0.88190 0.90834 0.91082 0.89913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.67 11.34 55.49 0.63 -23.04 16 2 C 0.04 1.02 3.47 -17.43 -0.06 0.96 16 3 Si 0.87 20.80 27.89 -169.99 -4.74 16.06 16 4 H -0.27 -6.43 6.86 56.52 0.39 -6.04 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.25 -6.31 5.71 -15.06 -0.09 -6.39 16 8 H 0.06 1.50 7.54 -52.49 -0.40 1.10 16 9 N -0.54 -12.58 2.72 -167.02 -0.45 -13.03 16 10 C 0.18 3.93 5.07 -5.19 -0.03 3.90 16 11 C -0.11 -2.25 5.48 -104.44 -0.57 -2.83 16 12 C -0.08 -1.25 9.81 -39.28 -0.39 -1.63 16 13 C -0.18 -2.65 10.11 -39.44 -0.40 -3.05 16 14 C 0.09 1.37 11.18 -17.55 -0.20 1.18 16 15 N -0.49 -9.79 10.34 -10.36 -0.11 -9.90 16 16 C 0.18 3.90 7.27 -17.45 -0.13 3.77 16 17 Cl 0.00 0.04 21.48 -51.86 -1.11 -1.08 16 18 C 0.13 2.66 6.61 -67.92 -0.45 2.21 16 19 C -0.19 -3.75 9.86 -26.72 -0.26 -4.02 16 20 C -0.23 -4.37 10.14 -26.73 -0.27 -4.64 16 21 H 0.26 6.82 8.32 -40.82 -0.34 6.48 16 22 H 0.12 2.91 5.11 -51.93 -0.27 2.65 16 23 H 0.04 0.83 7.90 -51.93 -0.41 0.42 16 24 H 0.13 1.83 8.05 -52.48 -0.42 1.41 16 25 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 26 H 0.15 1.83 8.06 -52.49 -0.42 1.41 16 27 H 0.09 1.64 8.10 -51.94 -0.42 1.22 16 28 H 0.10 2.19 7.09 -51.93 -0.37 1.82 16 29 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 30 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.08 1.75 8.01 -51.93 -0.42 1.33 16 LS Contribution 272.05 15.07 4.10 4.10 Total: -1.00 -27.60 272.05 -8.06 -35.66 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -3.54 Total: 1.75 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: -2.84 Total: -10.53 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: 0.07 Total: -45.97 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.74 Total: 16.06 kcal Atomic # 17 Polarization: 0.04 SS G_CDS: -1.11 Total: -1.08 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -27.60 -8.06 -35.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263786759.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.173 kcal (2) G-P(sol) polarization free energy of solvation -27.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds