Wall clock time and date at job start Sun Mar 29 2020 22:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47039 * 2 1 4 4 C 1.36771 * 119.99943 * 264.66745 * 3 2 1 5 5 H 1.07998 * 120.00230 * 145.38795 * 4 3 2 6 6 C 1.39057 * 119.99542 * 325.37602 * 4 3 2 7 7 N 1.31363 * 120.00548 * 338.62267 * 6 4 3 8 8 Si 1.86807 * 119.99577 * 158.62062 * 6 4 3 9 9 H 1.48490 * 109.47190 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.46799 * 120.00211 * 8 6 4 11 11 H 1.48502 * 109.46872 * 239.99908 * 8 6 4 12 12 C 1.34777 * 119.99859 * 84.66434 * 3 2 1 13 13 O 1.21836 * 120.00137 * 180.02562 * 12 3 2 14 14 C 1.41346 * 120.00254 * 359.97438 * 12 3 2 15 15 C 1.35709 * 120.00155 * 180.02562 * 14 12 3 16 16 C 1.41652 * 120.00118 * 180.02562 * 15 14 12 17 17 C 1.37148 * 126.19243 * 180.02562 * 16 15 14 18 18 N 1.30949 * 113.83032 * 180.02562 * 17 16 15 19 19 C 1.29360 * 117.49857 * 359.97438 * 18 17 16 20 20 S 1.70915 * 110.66607 * 0.02562 * 19 18 17 21 21 H 1.09006 * 109.47573 * 299.99655 * 1 2 3 22 22 H 1.08998 * 109.47285 * 60.00053 * 1 2 3 23 23 H 1.09005 * 109.47498 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46948 * 239.99995 * 2 1 3 25 25 H 1.08999 * 109.46560 * 120.00114 * 2 1 3 26 26 H 0.96998 * 120.00587 * 180.02562 * 7 6 4 27 27 H 1.07999 * 119.99991 * 0.02562 * 14 12 3 28 28 H 1.08000 * 120.00355 * 359.97438 * 15 14 12 29 29 H 1.07993 * 123.08903 * 0.05273 * 17 16 15 30 30 H 1.08004 * 124.67317 * 179.72885 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3500 1.9893 -1.1794 5 1 2.1708 3.0461 -1.3112 6 6 2.9183 1.2467 -2.2086 7 7 3.5181 0.1084 -1.9437 8 14 2.8289 1.8680 -3.9680 9 1 2.1064 3.1649 -3.9989 10 1 4.2036 2.0550 -4.4974 11 1 2.1061 0.8780 -4.8063 12 6 2.1406 2.0527 1.1622 13 8 2.5462 3.2015 1.1622 14 6 1.7972 1.4245 2.3809 15 6 1.9198 2.1009 3.5510 16 6 1.5762 1.4712 4.7725 17 6 1.6498 2.0323 6.0217 18 7 1.2716 1.2302 6.9852 19 6 0.8849 0.0407 6.6549 20 16 0.9772 -0.1752 4.9620 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8932 -0.5139 0.8900 26 1 3.9148 -0.4094 -2.6616 27 1 1.4372 0.4063 2.3809 28 1 2.2802 3.1190 3.5512 29 1 1.9882 3.0432 6.1950 30 1 0.5542 -0.7139 7.3532 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281750848.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:31 Heat of formation + Delta-G solvation = 34.381655 kcal Electronic energy + Delta-G solvation = -15793.794125 eV Core-core repulsion = 13102.924309 eV Total energy + Delta-G solvation = -2690.869816 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 252.067 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.46522 -38.81633 -35.30691 -33.83328 -32.19433 -29.60228 -29.17948 -26.21227 -24.86841 -22.70432 -21.80684 -20.13526 -18.80650 -17.28696 -17.03837 -16.52975 -15.32259 -14.85330 -14.38572 -14.33782 -13.89623 -13.74472 -13.07545 -13.02040 -12.96680 -12.06679 -11.86378 -11.76616 -11.22999 -11.12323 -10.92917 -10.66550 -10.45136 -10.40674 -10.17093 -9.66665 -9.12766 -9.08962 -8.50657 -7.94549 -7.60084 -6.52301 -4.03090 0.21817 1.39978 1.80732 2.11975 3.03834 3.13744 3.18078 3.24740 4.02412 4.36947 4.40090 4.78834 4.97671 5.23446 5.34309 5.41350 5.52566 5.84413 6.03754 6.13320 6.21036 6.26856 6.43923 6.66135 6.76001 6.81069 7.14482 7.42037 7.74308 8.10730 8.37697 9.05697 9.24338 9.91359 10.49214 Molecular weight = 252.07amu Principal moments of inertia in cm(-1) A = 0.044866 B = 0.005127 C = 0.004810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.936489 B = 5459.593168 C = 5820.284514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.089 3.911 3 N -0.418 5.418 4 C -0.295 4.295 5 H 0.099 0.901 6 C 0.034 3.966 7 N -0.856 5.856 8 Si 0.922 3.078 9 H -0.265 1.265 10 H -0.279 1.279 11 H -0.278 1.278 12 C 0.464 3.536 13 O -0.593 6.593 14 C -0.143 4.143 15 C -0.064 4.064 16 C -0.167 4.167 17 C 0.029 3.971 18 N -0.467 5.467 19 C -0.014 4.014 20 S 0.138 5.862 21 H 0.044 0.956 22 H 0.058 0.942 23 H 0.053 0.947 24 H 0.115 0.885 25 H 0.051 0.949 26 H 0.272 0.728 27 H 0.115 0.885 28 H 0.146 0.854 29 H 0.180 0.820 30 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.908 -4.914 9.061 11.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.035 4.035 3 N -0.134 5.134 4 C -0.424 4.424 5 H 0.116 0.884 6 C -0.171 4.171 7 N -0.493 5.493 8 Si 0.748 3.252 9 H -0.189 1.189 10 H -0.205 1.205 11 H -0.203 1.203 12 C 0.257 3.743 13 O -0.481 6.481 14 C -0.168 4.168 15 C -0.088 4.088 16 C -0.288 4.288 17 C -0.126 4.126 18 N -0.179 5.179 19 C -0.309 4.309 20 S 0.392 5.608 21 H 0.063 0.937 22 H 0.077 0.923 23 H 0.072 0.928 24 H 0.133 0.867 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.133 0.867 28 H 0.164 0.836 29 H 0.197 0.803 30 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -5.875 -5.293 8.873 11.885 hybrid contribution 0.282 0.763 -0.629 1.028 sum -5.593 -4.530 8.244 10.944 Atomic orbital electron populations 1.22234 0.97708 1.00627 1.01769 1.21722 0.92087 0.85340 1.04353 1.43656 1.52641 1.11709 1.05406 1.19666 1.37658 0.96092 0.88940 0.88372 1.25483 0.94295 0.96313 1.01038 1.69886 1.30978 1.14851 1.33541 0.85929 0.78382 0.79332 0.81548 1.18889 1.20493 1.20342 1.16837 0.85148 0.88344 0.83943 1.90675 1.52067 1.18350 1.86979 1.22579 0.99942 0.99841 0.94443 1.20352 0.99771 1.00332 0.88317 1.24100 1.08727 0.96928 0.99029 1.22519 1.03196 1.01132 0.85715 1.65953 1.12575 1.02939 1.36465 1.28321 1.06432 0.98121 0.97985 1.84013 1.58741 1.12113 1.05889 0.93722 0.92286 0.92808 0.86704 0.93055 0.91761 0.86726 0.83628 0.80349 0.78870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.90 10.07 37.16 0.37 -2.53 16 2 C 0.09 1.88 5.28 -4.04 -0.02 1.86 16 3 N -0.42 -10.49 2.55 -118.14 -0.30 -10.79 16 4 C -0.29 -7.98 8.96 -15.04 -0.13 -8.11 16 5 H 0.10 2.78 7.71 -52.49 -0.40 2.38 16 6 C 0.03 0.88 4.94 -17.45 -0.09 0.79 16 7 N -0.86 -22.12 11.32 55.50 0.63 -21.49 16 8 Si 0.92 19.71 29.60 -169.99 -5.03 14.68 16 9 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 10 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 11 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 12 C 0.46 11.52 7.35 -15.08 -0.11 11.41 16 13 O -0.59 -16.74 15.94 5.07 0.08 -16.66 16 14 C -0.14 -2.84 8.10 -39.31 -0.32 -3.16 16 15 C -0.06 -1.12 9.39 -39.19 -0.37 -1.49 16 16 C -0.17 -2.51 6.26 -38.68 -0.24 -2.75 16 17 C 0.03 0.41 11.39 -18.32 -0.21 0.20 16 18 N -0.47 -6.53 10.50 -15.04 -0.16 -6.69 16 19 C -0.01 -0.17 12.20 51.72 0.63 0.46 16 20 S 0.14 1.72 21.97 -107.50 -2.36 -0.64 16 21 H 0.04 0.75 7.53 -51.93 -0.39 0.36 16 22 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 23 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.12 2.66 5.36 -51.93 -0.28 2.38 16 25 H 0.05 1.00 6.40 -51.93 -0.33 0.67 16 26 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 27 H 0.12 2.02 5.02 -52.49 -0.26 1.76 16 28 H 0.15 2.65 7.46 -52.49 -0.39 2.26 16 29 H 0.18 2.14 8.06 -52.49 -0.42 1.72 16 30 H 0.19 1.52 8.06 -52.48 -0.42 1.10 16 LS Contribution 277.31 15.07 4.18 4.18 Total: -1.00 -30.74 277.31 -6.34 -37.08 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -2.89 Total: 3.65 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: -0.49 Total: -3.31 kcal Atomic # 7 Polarization: -39.14 SS G_CDS: 0.17 Total: -38.97 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: 0.08 Total: -16.66 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.03 Total: 14.68 kcal Atomic # 16 Polarization: 1.72 SS G_CDS: -2.36 Total: -0.64 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -30.74 -6.34 -37.08 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281750848.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.457 kcal (2) G-P(sol) polarization free energy of solvation -30.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds