Wall clock time and date at job start Sun Mar 29 2020 22:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46506 * 119.99759 * 2 1 4 4 C 1.50699 * 109.46928 * 90.00349 * 3 2 1 5 5 H 1.08003 * 119.99963 * 0.02562 * 4 3 2 6 6 C 1.37873 * 119.99865 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00518 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99987 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.46948 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47174 * 120.00320 * 8 6 4 11 11 H 1.48497 * 109.47378 * 240.00235 * 8 6 4 12 12 C 1.34771 * 120.00157 * 180.02562 * 2 1 3 13 13 O 1.21777 * 119.99994 * 179.97438 * 12 2 1 14 14 C 1.41545 * 119.99981 * 359.97438 * 12 2 1 15 15 C 1.35569 * 120.00218 * 179.97438 * 14 12 2 16 16 C 1.41715 * 119.99773 * 179.97438 * 15 14 12 17 17 C 1.37079 * 126.18858 * 179.71274 * 16 15 14 18 18 N 1.30959 * 113.84601 * 179.85300 * 17 16 15 19 19 C 1.29348 * 117.49433 * 0.46464 * 18 17 16 20 20 S 1.70917 * 110.65301 * 359.73869 * 19 18 17 21 21 H 1.08995 * 109.47445 * 89.99576 * 1 2 3 22 22 H 1.09001 * 109.47057 * 210.00204 * 1 2 3 23 23 H 1.08999 * 109.47333 * 329.99764 * 1 2 3 24 24 H 1.09004 * 109.47073 * 210.00177 * 3 2 1 25 25 H 1.09000 * 109.47212 * 330.00260 * 3 2 1 26 26 H 0.96992 * 120.00316 * 179.97438 * 7 6 4 27 27 H 1.08003 * 120.00045 * 0.02562 * 14 12 2 28 28 H 1.07995 * 119.99469 * 0.02562 * 15 14 12 29 29 H 1.07998 * 123.07142 * 0.02562 * 17 16 15 30 30 H 1.07999 * 124.67759 * 179.74099 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 1.4208 5 1 2.0981 1.0957 2.2417 6 6 3.1268 2.8774 1.6728 7 7 3.5541 3.6177 0.6732 8 14 3.4376 3.4170 3.4340 9 1 2.8597 2.4169 4.3673 10 1 4.9001 3.5247 3.6680 11 1 2.8005 4.7380 3.6668 12 6 2.1389 -1.1671 -0.0005 13 8 3.3566 -1.1671 -0.0010 14 6 1.4312 -2.3930 -0.0005 15 6 2.1090 -3.5670 -0.0016 16 6 1.4003 -4.7943 -0.0010 17 6 1.9537 -6.0484 -0.0075 18 7 1.0716 -7.0163 -0.0022 19 6 -0.1787 -6.6848 -0.0011 20 16 -0.3515 -4.9844 0.0001 21 1 -0.3634 0.0001 -1.0276 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3634 0.8899 0.5139 24 1 3.1499 1.1385 -0.5139 25 1 1.6083 2.0285 -0.5138 26 1 4.0309 4.4435 0.8505 27 1 0.3511 -2.3930 -0.0005 28 1 3.1889 -3.5670 -0.0020 29 1 3.0196 -6.2223 -0.0134 30 1 -1.0003 -7.3858 -0.0010 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282392991.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:17 Heat of formation + Delta-G solvation = 33.062455 kcal Electronic energy + Delta-G solvation = -15384.729836 eV Core-core repulsion = 12693.802815 eV Total energy + Delta-G solvation = -2690.927021 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 252.067 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.81024 -39.16734 -35.05061 -34.26151 -32.60473 -29.75475 -27.84095 -26.31280 -25.55580 -23.56939 -21.50615 -20.45913 -18.58300 -17.68686 -16.94987 -16.51513 -15.46167 -15.21984 -14.72995 -14.40967 -14.31557 -14.16102 -13.44708 -12.97135 -12.55612 -12.37200 -12.14547 -11.78552 -11.38318 -11.15550 -10.96725 -10.84049 -10.58490 -10.17139 -9.96333 -9.62257 -9.40165 -9.05721 -8.44451 -8.34863 -7.62879 -6.04835 -4.09750 -0.10624 1.08185 1.48460 1.77068 2.76247 3.29593 3.37189 3.41369 3.93996 4.04623 4.13298 4.44932 4.86702 4.97756 5.02494 5.10739 5.29100 5.53478 5.68719 5.90107 5.90976 6.16748 6.18307 6.31000 7.06561 7.43044 7.43952 7.51960 7.91492 8.22337 8.37398 8.88385 9.04787 9.55345 11.03224 Molecular weight = 252.07amu Principal moments of inertia in cm(-1) A = 0.041316 B = 0.004289 C = 0.004215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.535002 B = 6527.326473 C = 6640.670072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.595 5.595 3 C 0.243 3.757 4 C -0.526 4.526 5 H 0.058 0.942 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.283 1.283 12 C 0.532 3.468 13 O -0.544 6.544 14 C -0.182 4.182 15 C -0.015 4.015 16 C -0.196 4.196 17 C 0.056 3.944 18 N -0.471 5.471 19 C 0.003 3.997 20 S 0.153 5.847 21 H 0.046 0.954 22 H 0.057 0.943 23 H 0.076 0.924 24 H 0.045 0.955 25 H 0.033 0.967 26 H 0.263 0.737 27 H 0.123 0.877 28 H 0.152 0.848 29 H 0.184 0.816 30 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.610 -16.536 -2.299 19.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.326 5.326 3 C 0.124 3.876 4 C -0.565 4.565 5 H 0.076 0.924 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.209 1.209 12 C 0.322 3.678 13 O -0.425 6.425 14 C -0.206 4.206 15 C -0.037 4.037 16 C -0.317 4.317 17 C -0.100 4.100 18 N -0.183 5.183 19 C -0.291 4.291 20 S 0.408 5.592 21 H 0.064 0.936 22 H 0.076 0.924 23 H 0.095 0.905 24 H 0.063 0.937 25 H 0.051 0.949 26 H 0.073 0.927 27 H 0.140 0.860 28 H 0.169 0.831 29 H 0.201 0.799 30 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -10.705 -16.290 -2.341 19.633 hybrid contribution 0.882 0.245 0.994 1.351 sum -9.824 -16.045 -1.347 18.862 Atomic orbital electron populations 1.21702 0.81429 1.02624 1.00555 1.48123 1.06199 1.08065 1.70234 1.19328 0.92649 0.78003 0.97617 1.21469 1.36484 1.06268 0.92248 0.92382 1.24939 0.95329 0.96376 0.97478 1.69939 1.38419 1.14339 1.30683 0.86434 0.78109 0.78292 0.84539 1.19805 1.20839 1.20943 1.16807 0.87724 0.84227 0.79030 1.90809 1.13446 1.87674 1.50548 1.22523 1.00249 0.93840 1.04008 1.20556 1.00639 0.88296 0.94214 1.24074 0.95811 0.98875 1.12955 1.22667 1.00863 0.85467 1.00955 1.66025 1.00750 1.36500 1.15062 1.28521 0.97644 0.98036 1.04915 1.84018 1.04356 1.05358 1.65473 0.93553 0.92415 0.90549 0.93657 0.94882 0.92746 0.85981 0.83082 0.79926 0.78449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.28 10.12 59.84 0.61 1.89 16 2 N -0.60 -12.82 2.86 -186.42 -0.53 -13.35 16 3 C 0.24 6.42 5.16 -5.19 -0.03 6.39 16 4 C -0.53 -15.02 9.39 -34.44 -0.32 -15.35 16 5 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 7 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 8 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 9 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 12 C 0.53 11.28 7.44 -15.00 -0.11 11.17 16 13 O -0.54 -13.78 15.69 5.12 0.08 -13.70 16 14 C -0.18 -2.87 8.58 -39.28 -0.34 -3.20 16 15 C -0.01 -0.21 9.39 -39.21 -0.37 -0.57 16 16 C -0.20 -2.31 6.26 -38.68 -0.24 -2.55 16 17 C 0.06 0.63 11.38 -18.34 -0.21 0.42 16 18 N -0.47 -5.34 10.50 -15.06 -0.16 -5.50 16 19 C 0.00 0.03 12.20 51.72 0.63 0.66 16 20 S 0.15 1.42 21.97 -107.50 -2.36 -0.94 16 21 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 22 H 0.06 0.75 6.08 -51.93 -0.32 0.43 16 23 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 24 H 0.05 1.34 7.42 -51.93 -0.39 0.96 16 25 H 0.03 0.87 8.07 -51.93 -0.42 0.46 16 26 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 27 H 0.12 1.58 5.13 -52.48 -0.27 1.31 16 28 H 0.15 2.19 7.45 -52.49 -0.39 1.80 16 29 H 0.18 1.67 8.06 -52.49 -0.42 1.24 16 30 H 0.20 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 283.16 15.07 4.27 4.27 Total: -1.00 -34.15 283.16 -6.48 -40.63 By element: Atomic # 1 Polarization: 0.14 SS G_CDS: -3.01 Total: -2.88 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -0.48 Total: 0.49 kcal Atomic # 7 Polarization: -44.82 SS G_CDS: 0.05 Total: -44.77 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: 0.08 Total: -13.70 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: 1.42 SS G_CDS: -2.36 Total: -0.94 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -34.15 -6.48 -40.63 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282392991.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.697 kcal (2) G-P(sol) polarization free energy of solvation -34.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds