Wall clock time and date at job start Sun Mar 29 2020 22:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46506 * 119.99759 * 2 1 4 4 C 1.50699 * 109.46928 * 90.00349 * 3 2 1 5 5 H 1.08003 * 119.99963 * 0.02562 * 4 3 2 6 6 C 1.37873 * 119.99865 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00518 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99987 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.46948 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47174 * 120.00320 * 8 6 4 11 11 H 1.48497 * 109.47378 * 240.00235 * 8 6 4 12 12 C 1.34771 * 120.00157 * 180.02562 * 2 1 3 13 13 O 1.21777 * 119.99994 * 179.97438 * 12 2 1 14 14 C 1.41545 * 119.99981 * 359.97438 * 12 2 1 15 15 C 1.35569 * 120.00218 * 179.97438 * 14 12 2 16 16 C 1.41715 * 119.99773 * 179.97438 * 15 14 12 17 17 C 1.37079 * 126.18858 * 179.71274 * 16 15 14 18 18 N 1.30959 * 113.84601 * 179.85300 * 17 16 15 19 19 C 1.29348 * 117.49433 * 0.46464 * 18 17 16 20 20 S 1.70917 * 110.65301 * 359.73869 * 19 18 17 21 21 H 1.08995 * 109.47445 * 89.99576 * 1 2 3 22 22 H 1.09001 * 109.47057 * 210.00204 * 1 2 3 23 23 H 1.08999 * 109.47333 * 329.99764 * 1 2 3 24 24 H 1.09004 * 109.47073 * 210.00177 * 3 2 1 25 25 H 1.09000 * 109.47212 * 330.00260 * 3 2 1 26 26 H 0.96992 * 120.00316 * 179.97438 * 7 6 4 27 27 H 1.08003 * 120.00045 * 0.02562 * 14 12 2 28 28 H 1.07995 * 119.99469 * 0.02562 * 15 14 12 29 29 H 1.07998 * 123.07142 * 0.02562 * 17 16 15 30 30 H 1.07999 * 124.67759 * 179.74099 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 1.4208 5 1 2.0981 1.0957 2.2417 6 6 3.1268 2.8774 1.6728 7 7 3.5541 3.6177 0.6732 8 14 3.4376 3.4170 3.4340 9 1 2.8597 2.4169 4.3673 10 1 4.9001 3.5247 3.6680 11 1 2.8005 4.7380 3.6668 12 6 2.1389 -1.1671 -0.0005 13 8 3.3566 -1.1671 -0.0010 14 6 1.4312 -2.3930 -0.0005 15 6 2.1090 -3.5670 -0.0016 16 6 1.4003 -4.7943 -0.0010 17 6 1.9537 -6.0484 -0.0075 18 7 1.0716 -7.0163 -0.0022 19 6 -0.1787 -6.6848 -0.0011 20 16 -0.3515 -4.9844 0.0001 21 1 -0.3634 0.0001 -1.0276 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3634 0.8899 0.5139 24 1 3.1499 1.1385 -0.5139 25 1 1.6083 2.0285 -0.5138 26 1 4.0309 4.4435 0.8505 27 1 0.3511 -2.3930 -0.0005 28 1 3.1889 -3.5670 -0.0020 29 1 3.0196 -6.2223 -0.0134 30 1 -1.0003 -7.3858 -0.0010 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282392991.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:17 Heat of formation + Delta-G solvation = 9.329579 kcal Electronic energy + Delta-G solvation = -15385.758970 eV Core-core repulsion = 12693.802815 eV Total energy + Delta-G solvation = -2691.956156 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 252.067 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.93829 -40.48758 -36.72520 -35.51501 -34.69354 -31.00040 -29.53885 -27.54475 -26.87452 -25.22640 -22.95783 -21.31978 -19.92695 -18.76111 -18.66739 -18.24627 -17.09591 -16.44234 -16.23982 -15.99720 -15.47781 -14.94010 -14.55440 -14.50184 -14.31075 -13.79599 -13.58691 -13.39000 -13.04200 -12.77978 -12.54399 -12.23782 -12.19613 -11.98001 -11.68298 -10.91744 -10.65344 -10.59691 -10.14580 -9.57082 -9.21137 -8.22592 -6.38105 -1.03526 0.30552 0.70874 0.71141 1.36456 1.39017 1.51055 1.85571 2.31056 2.49902 2.54799 3.06475 3.40646 3.76927 3.95862 4.10303 4.29420 4.39423 4.46918 4.69741 4.88873 4.94350 5.05487 5.14550 5.18354 5.29954 5.55507 5.83626 6.05244 6.64084 6.68700 6.75939 7.26614 7.43992 8.84473 Molecular weight = 252.07amu Principal moments of inertia in cm(-1) A = 0.041316 B = 0.004289 C = 0.004215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.535002 B = 6527.326473 C = 6640.670072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.606 5.606 3 C 0.257 3.743 4 C -0.543 4.543 5 H 0.053 0.947 6 C 0.007 3.993 7 N -0.928 5.928 8 Si 0.970 3.030 9 H -0.268 1.268 10 H -0.281 1.281 11 H -0.267 1.267 12 C 0.528 3.472 13 O -0.605 6.605 14 C -0.215 4.215 15 C 0.026 3.974 16 C -0.244 4.244 17 C 0.075 3.925 18 N -0.503 5.503 19 C 0.025 3.975 20 S 0.198 5.802 21 H 0.072 0.928 22 H 0.092 0.908 23 H 0.070 0.930 24 H -0.001 1.001 25 H 0.026 0.974 26 H 0.268 0.732 27 H 0.153 0.847 28 H 0.137 0.863 29 H 0.195 0.805 30 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.902 -18.581 -1.323 22.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.336 5.336 3 C 0.136 3.864 4 C -0.582 4.582 5 H 0.071 0.929 6 C -0.192 4.192 7 N -0.568 5.568 8 Si 0.794 3.206 9 H -0.192 1.192 10 H -0.207 1.207 11 H -0.192 1.192 12 C 0.321 3.679 13 O -0.491 6.491 14 C -0.238 4.238 15 C 0.004 3.996 16 C -0.365 4.365 17 C -0.083 4.083 18 N -0.216 5.216 19 C -0.268 4.268 20 S 0.454 5.546 21 H 0.091 0.909 22 H 0.110 0.890 23 H 0.088 0.912 24 H 0.017 0.983 25 H 0.044 0.956 26 H 0.077 0.923 27 H 0.170 0.830 28 H 0.154 0.846 29 H 0.212 0.788 30 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -13.071 -18.333 -1.372 22.557 hybrid contribution 1.525 0.621 0.629 1.762 sum -11.546 -17.712 -0.743 21.156 Atomic orbital electron populations 1.21995 0.77839 1.04026 1.02749 1.48121 1.08478 1.06550 1.70468 1.18794 0.91180 0.80259 0.96188 1.21727 1.36936 1.06595 0.92942 0.92922 1.25875 0.94809 0.96357 1.02114 1.70055 1.38910 1.14828 1.33033 0.85337 0.77915 0.78416 0.78940 1.19182 1.20691 1.19234 1.17595 0.87302 0.85616 0.77407 1.90761 1.16107 1.88556 1.53632 1.22138 1.01206 0.91351 1.09143 1.20532 1.00189 0.88985 0.89914 1.23935 0.97899 0.97923 1.16717 1.22990 1.01788 0.85314 0.98162 1.66152 1.01706 1.36620 1.17167 1.29319 0.97889 0.98836 1.00785 1.83885 1.01564 1.05094 1.64068 0.90904 0.88970 0.91158 0.98301 0.95587 0.92335 0.82989 0.84579 0.78824 0.74641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.32 10.12 127.77 1.29 3.61 16 2 N -0.61 -26.83 2.86 -861.89 -2.46 -29.29 16 3 C 0.26 14.29 5.16 85.63 0.44 14.73 16 4 C -0.54 -32.03 9.39 25.60 0.24 -31.79 16 5 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 6 C 0.01 0.43 5.46 84.65 0.46 0.89 16 7 N -0.93 -56.81 13.29 21.45 0.28 -56.53 16 8 Si 0.97 45.41 29.54 68.60 2.03 47.43 16 9 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 10 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 11 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 12 C 0.53 23.16 7.44 85.06 0.63 23.79 16 13 O -0.61 -32.60 15.69 -4.60 -0.07 -32.68 16 14 C -0.22 -6.67 8.58 22.47 0.19 -6.47 16 15 C 0.03 0.72 9.39 22.51 0.21 0.93 16 16 C -0.24 -5.25 6.26 22.86 0.14 -5.10 16 17 C 0.07 1.50 11.38 84.55 0.96 2.46 16 18 N -0.50 -9.80 10.50 -201.55 -2.12 -11.92 16 19 C 0.02 0.33 12.20 130.61 1.59 1.92 16 20 S 0.20 2.94 21.97 -56.49 -1.24 1.70 16 21 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 22 H 0.09 2.16 6.08 -2.39 -0.01 2.15 16 23 H 0.07 2.22 8.07 -2.39 -0.02 2.20 16 24 H 0.00 -0.07 7.42 -2.38 -0.02 -0.09 16 25 H 0.03 1.45 8.07 -2.39 -0.02 1.43 16 26 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 27 H 0.15 3.60 5.13 -2.91 -0.01 3.58 16 28 H 0.14 4.09 7.45 -2.91 -0.02 4.07 16 29 H 0.19 3.22 8.06 -2.91 -0.02 3.20 16 30 H 0.24 1.15 8.06 -2.91 -0.02 1.13 16 Total: -1.00 -77.86 283.16 3.75 -74.12 By element: Atomic # 1 Polarization: 1.03 SS G_CDS: 1.15 Total: 2.19 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: 6.17 Total: 4.97 kcal Atomic # 7 Polarization: -93.44 SS G_CDS: -4.29 Total: -97.73 kcal Atomic # 8 Polarization: -32.60 SS G_CDS: -0.07 Total: -32.68 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.43 kcal Atomic # 16 Polarization: 2.94 SS G_CDS: -1.24 Total: 1.70 kcal Total: -77.86 3.75 -74.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282392991.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.445 kcal (2) G-P(sol) polarization free energy of solvation -77.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds