Wall clock time and date at job start Sun Mar 29 2020 23:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34832 * 117.00037 * 2 1 4 4 O 1.21555 * 119.99968 * 359.97438 * 3 2 1 5 5 C 1.47043 * 120.00186 * 180.02562 * 3 2 1 6 6 C 1.38089 * 125.90870 * 179.97438 * 5 3 2 7 7 C 1.39322 * 107.47974 * 179.97438 * 6 5 3 8 8 C 1.38119 * 107.49984 * 0.02562 * 7 6 5 9 9 C 1.47100 * 125.89944 * 179.97438 * 8 7 6 10 10 O 1.21678 * 119.99652 * 184.99558 * 9 8 7 11 11 N 1.34774 * 120.00141 * 4.98610 * 9 8 7 12 12 C 1.36650 * 120.00266 * 174.79106 * 11 9 8 13 13 H 1.08009 * 119.99440 * 0.28407 * 12 11 9 14 14 C 1.39179 * 120.00220 * 180.27879 * 12 11 9 15 15 N 1.31276 * 119.99695 * 179.97438 * 14 12 11 16 16 Si 1.86792 * 119.99935 * 0.02562 * 14 12 11 17 17 H 1.48506 * 109.47216 * 89.99892 * 16 14 12 18 18 H 1.48500 * 109.47170 * 209.99578 * 16 14 12 19 19 H 1.48499 * 109.47457 * 329.99940 * 16 14 12 20 20 N 1.36792 * 108.19805 * 0.22765 * 8 7 6 21 21 C 1.46496 * 125.67681 * 179.75339 * 20 8 7 22 22 H 1.09005 * 109.46776 * 60.00116 * 1 2 3 23 23 H 1.09002 * 109.47149 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47055 * 300.00636 * 1 2 3 25 25 H 1.07994 * 126.26071 * 0.02562 * 6 5 3 26 26 H 1.08003 * 126.24598 * 180.02562 * 7 6 5 27 27 H 0.97004 * 119.99734 * 355.07481 * 11 9 8 28 28 H 0.97003 * 120.00125 * 179.97438 * 15 14 12 29 29 H 1.08991 * 109.47652 * 94.96189 * 21 20 8 30 30 H 1.09010 * 109.46682 * 214.96299 * 21 20 8 31 31 H 1.08996 * 109.47343 * 334.95703 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0641 1.2014 0.0000 4 8 1.4021 2.2208 -0.0005 5 6 3.5326 1.2784 -0.0006 6 6 4.2828 2.4377 -0.0011 7 6 5.6258 2.0671 -0.0010 8 6 5.6757 0.6868 -0.0009 9 6 6.8977 -0.1321 -0.0012 10 8 6.8186 -1.3429 -0.0929 11 7 8.1049 0.4587 0.0998 12 6 9.2327 -0.3054 0.2067 13 1 9.1571 -1.3828 0.2057 14 6 10.4788 0.3047 0.3169 15 7 11.5622 -0.4294 0.4201 16 14 10.6094 2.1681 0.3193 17 1 10.5172 2.6690 1.7142 18 1 11.9119 2.5738 -0.2673 19 1 9.5028 2.7429 -0.4872 20 7 4.3925 0.2129 -0.0062 21 6 4.0034 -1.1994 -0.0130 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 3.8987 3.4470 -0.0008 26 1 6.4731 2.7368 -0.0009 27 1 8.1727 1.4263 0.1007 28 1 12.4307 -0.0042 0.4965 29 1 3.8185 -1.5304 1.0089 30 1 3.0964 -1.3235 -0.6048 31 1 4.8055 -1.7953 -0.4484 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292867571.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:24:34 Heat of formation + Delta-G solvation = -67.669858 kcal Electronic energy + Delta-G solvation = -18109.031828 eV Core-core repulsion = 14970.983855 eV Total energy + Delta-G solvation = -3138.047973 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.094 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.32958 -39.90747 -37.97448 -36.49216 -34.34004 -32.71460 -31.79382 -29.95031 -27.79006 -26.33389 -25.43005 -23.08507 -21.40988 -19.91113 -19.35937 -18.53692 -17.77455 -16.98309 -16.54829 -15.86040 -15.25662 -15.14233 -14.43187 -13.96770 -13.53840 -13.35639 -13.30158 -13.13285 -12.80492 -12.61965 -12.40561 -12.27808 -11.96444 -11.61035 -11.32559 -10.94953 -10.75113 -10.70297 -10.16084 -9.79761 -8.81137 -8.62604 -8.41983 -8.10230 -6.54395 -3.98781 1.14929 2.35275 2.53596 2.92956 2.97150 3.00740 3.07644 3.20251 3.94414 4.03905 4.44554 4.74932 4.92296 5.00395 5.11311 5.12981 5.30085 5.44546 5.48058 5.55314 5.69825 5.97449 6.11518 6.17459 6.33762 6.75495 7.08698 7.21787 7.35506 7.71436 7.92086 8.36934 8.71148 9.18491 9.59094 10.56593 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.043672 B = 0.005210 C = 0.004676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.984145 B = 5372.810482 C = 5987.045350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.360 6.360 3 C 0.541 3.459 4 O -0.507 6.507 5 C -0.053 4.053 6 C -0.099 4.099 7 C -0.196 4.196 8 C 0.053 3.947 9 C 0.493 3.507 10 O -0.583 6.583 11 N -0.550 5.550 12 C -0.303 4.303 13 H 0.125 0.875 14 C 0.048 3.952 15 N -0.860 5.860 16 Si 0.878 3.122 17 H -0.265 1.265 18 H -0.272 1.272 19 H -0.264 1.264 20 N -0.385 5.385 21 C 0.060 3.940 22 H 0.063 0.937 23 H 0.101 0.899 24 H 0.063 0.937 25 H 0.151 0.849 26 H 0.149 0.851 27 H 0.377 0.623 28 H 0.279 0.721 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.711 4.182 -0.574 16.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.277 6.277 3 C 0.387 3.613 4 O -0.395 6.395 5 C -0.165 4.165 6 C -0.125 4.125 7 C -0.220 4.220 8 C -0.069 4.069 9 C 0.281 3.719 10 O -0.469 6.469 11 N -0.186 5.186 12 C -0.432 4.432 13 H 0.143 0.857 14 C -0.159 4.159 15 N -0.498 5.498 16 Si 0.703 3.297 17 H -0.190 1.190 18 H -0.197 1.197 19 H -0.189 1.189 20 N -0.058 5.058 21 C -0.080 4.080 22 H 0.081 0.919 23 H 0.119 0.881 24 H 0.082 0.918 25 H 0.169 0.831 26 H 0.167 0.833 27 H 0.211 0.789 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.105 0.895 31 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -15.893 3.249 -0.600 16.233 hybrid contribution 0.050 1.488 0.053 1.490 sum -15.843 4.738 -0.547 16.545 Atomic orbital electron populations 1.23259 0.76158 1.03647 1.02594 1.86642 1.23549 1.32769 1.84765 1.19933 0.86949 0.81559 0.72824 1.90852 1.65502 1.35827 1.47327 1.19301 0.86324 0.88268 1.22566 1.21096 0.92072 0.96534 1.02822 1.21272 0.97036 0.92767 1.10966 1.20932 0.85440 0.93437 1.07086 1.16407 0.81636 0.86863 0.87035 1.90617 1.85895 1.13552 1.56884 1.41844 1.05706 1.08336 1.62741 1.19499 0.82128 0.94394 1.47220 0.85699 1.25135 0.94911 0.99052 0.96771 1.69553 0.98456 1.36137 1.45642 0.86675 0.79134 0.84440 0.79473 1.19011 1.19678 1.18886 1.43848 1.04422 1.06858 1.50707 1.22529 1.03563 0.77896 1.04003 0.91855 0.88062 0.91837 0.83098 0.83317 0.78935 0.91009 0.90641 0.89471 0.86461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.57 101.05 1.07 1.39 16 2 O -0.36 -4.57 8.06 -40.85 -0.33 -4.90 16 3 C 0.54 8.22 7.93 34.30 0.27 8.49 16 4 O -0.51 -8.37 16.67 -19.31 -0.32 -8.69 16 5 C -0.05 -0.86 6.87 -82.08 -0.56 -1.42 16 6 C -0.10 -1.54 10.60 -39.23 -0.42 -1.96 16 7 C -0.20 -3.25 10.31 -39.22 -0.40 -3.66 16 8 C 0.05 1.03 6.87 -82.10 -0.56 0.46 16 9 C 0.49 11.33 7.74 -12.67 -0.10 11.23 16 10 O -0.58 -14.98 14.07 5.21 0.07 -14.91 16 11 N -0.55 -12.86 5.06 -12.06 -0.06 -12.92 16 12 C -0.30 -8.17 10.16 -15.06 -0.15 -8.32 16 13 H 0.13 3.81 7.39 -52.48 -0.39 3.42 16 14 C 0.05 1.24 5.50 -17.44 -0.10 1.14 16 15 N -0.86 -23.68 13.95 55.51 0.77 -22.91 16 16 Si 0.88 18.28 27.74 -169.99 -4.72 13.57 16 17 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 18 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 19 H -0.26 -5.02 6.52 56.52 0.37 -4.65 16 20 N -0.39 -6.71 3.18 -115.87 -0.37 -7.08 16 21 C 0.06 0.92 10.01 59.84 0.60 1.52 16 22 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 23 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.15 2.01 8.06 -52.49 -0.42 1.58 16 26 H 0.15 2.16 7.42 -52.48 -0.39 1.77 16 27 H 0.38 7.76 4.63 -40.82 -0.19 7.57 16 28 H 0.28 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.09 1.12 6.43 -51.92 -0.33 0.79 16 31 H 0.12 2.02 5.91 -51.93 -0.31 1.71 16 LS Contribution 276.71 15.07 4.17 4.17 Total: -1.00 -31.11 276.71 -4.02 -35.13 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -2.89 Total: 9.68 kcal Atomic # 6 Polarization: 9.22 SS G_CDS: -0.36 Total: 8.87 kcal Atomic # 7 Polarization: -43.26 SS G_CDS: 0.35 Total: -42.91 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -0.58 Total: -28.51 kcal Atomic # 14 Polarization: 18.28 SS G_CDS: -4.72 Total: 13.57 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -31.11 -4.02 -35.13 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292867571.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.543 kcal (2) G-P(sol) polarization free energy of solvation -31.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds