Wall clock time and date at job start Sun Mar 29 2020 23:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34832 * 117.00037 * 2 1 4 4 O 1.21555 * 119.99968 * 359.97438 * 3 2 1 5 5 C 1.47043 * 120.00186 * 180.02562 * 3 2 1 6 6 C 1.38089 * 125.90870 * 179.97438 * 5 3 2 7 7 C 1.39322 * 107.47974 * 179.97438 * 6 5 3 8 8 C 1.38119 * 107.49984 * 0.02562 * 7 6 5 9 9 C 1.47100 * 125.89944 * 179.97438 * 8 7 6 10 10 O 1.21678 * 119.99652 * 184.99558 * 9 8 7 11 11 N 1.34774 * 120.00141 * 4.98610 * 9 8 7 12 12 C 1.36650 * 120.00266 * 174.79106 * 11 9 8 13 13 H 1.08009 * 119.99440 * 0.28407 * 12 11 9 14 14 C 1.39179 * 120.00220 * 180.27879 * 12 11 9 15 15 N 1.31276 * 119.99695 * 179.97438 * 14 12 11 16 16 Si 1.86792 * 119.99935 * 0.02562 * 14 12 11 17 17 H 1.48506 * 109.47216 * 89.99892 * 16 14 12 18 18 H 1.48500 * 109.47170 * 209.99578 * 16 14 12 19 19 H 1.48499 * 109.47457 * 329.99940 * 16 14 12 20 20 N 1.36792 * 108.19805 * 0.22765 * 8 7 6 21 21 C 1.46496 * 125.67681 * 179.75339 * 20 8 7 22 22 H 1.09005 * 109.46776 * 60.00116 * 1 2 3 23 23 H 1.09002 * 109.47149 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47055 * 300.00636 * 1 2 3 25 25 H 1.07994 * 126.26071 * 0.02562 * 6 5 3 26 26 H 1.08003 * 126.24598 * 180.02562 * 7 6 5 27 27 H 0.97004 * 119.99734 * 355.07481 * 11 9 8 28 28 H 0.97003 * 120.00125 * 179.97438 * 15 14 12 29 29 H 1.08991 * 109.47652 * 94.96189 * 21 20 8 30 30 H 1.09010 * 109.46682 * 214.96299 * 21 20 8 31 31 H 1.08996 * 109.47343 * 334.95703 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0641 1.2014 0.0000 4 8 1.4021 2.2208 -0.0005 5 6 3.5326 1.2784 -0.0006 6 6 4.2828 2.4377 -0.0011 7 6 5.6258 2.0671 -0.0010 8 6 5.6757 0.6868 -0.0009 9 6 6.8977 -0.1321 -0.0012 10 8 6.8186 -1.3429 -0.0929 11 7 8.1049 0.4587 0.0998 12 6 9.2327 -0.3054 0.2067 13 1 9.1571 -1.3828 0.2057 14 6 10.4788 0.3047 0.3169 15 7 11.5622 -0.4294 0.4201 16 14 10.6094 2.1681 0.3193 17 1 10.5172 2.6690 1.7142 18 1 11.9119 2.5738 -0.2673 19 1 9.5028 2.7429 -0.4872 20 7 4.3925 0.2129 -0.0062 21 6 4.0034 -1.1994 -0.0130 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 3.8987 3.4470 -0.0008 26 1 6.4731 2.7368 -0.0009 27 1 8.1727 1.4263 0.1007 28 1 12.4307 -0.0042 0.4965 29 1 3.8185 -1.5304 1.0089 30 1 3.0964 -1.3235 -0.6048 31 1 4.8055 -1.7953 -0.4484 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292867571.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:24:34 Heat of formation + Delta-G solvation = -89.127355 kcal Electronic energy + Delta-G solvation = -18109.962294 eV Core-core repulsion = 14970.983855 eV Total energy + Delta-G solvation = -3138.978440 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.094 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.65306 -41.09886 -39.76371 -37.59551 -36.24535 -34.24531 -33.53809 -31.28816 -28.77925 -27.59515 -27.12776 -24.51094 -22.81650 -21.23642 -21.11807 -20.16752 -19.00302 -18.26013 -17.62623 -17.37794 -17.04420 -16.47238 -15.99007 -15.26184 -15.19044 -14.91374 -14.55040 -14.32990 -14.27082 -14.18338 -13.85507 -13.25506 -13.15383 -12.99766 -12.84920 -12.45748 -11.99621 -11.91629 -11.87078 -11.61266 -10.67433 -10.37097 -9.90578 -9.49639 -8.49589 -6.06812 -0.16623 0.98053 1.33199 1.38842 1.41865 1.46663 1.71545 1.97705 2.20145 2.31891 2.79690 3.15901 3.61254 3.88854 3.90820 4.16758 4.28856 4.33930 4.35717 4.45315 4.67805 4.76230 4.92627 4.97836 5.16591 5.36615 5.54676 5.78292 5.83826 5.92413 6.46438 6.57701 6.73742 7.23877 7.75170 8.66073 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.043672 B = 0.005210 C = 0.004676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.984145 B = 5372.810482 C = 5987.045350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.362 6.362 3 C 0.546 3.454 4 O -0.519 6.519 5 C -0.046 4.046 6 C -0.100 4.100 7 C -0.171 4.171 8 C 0.010 3.990 9 C 0.502 3.498 10 O -0.619 6.619 11 N -0.553 5.553 12 C -0.332 4.332 13 H 0.066 0.934 14 C -0.002 4.002 15 N -0.914 5.914 16 Si 0.954 3.046 17 H -0.252 1.252 18 H -0.269 1.269 19 H -0.229 1.229 20 N -0.388 5.388 21 C 0.061 3.939 22 H 0.067 0.933 23 H 0.134 0.866 24 H 0.066 0.934 25 H 0.180 0.820 26 H 0.174 0.826 27 H 0.393 0.607 28 H 0.285 0.715 29 H 0.085 0.915 30 H 0.112 0.888 31 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.095 7.110 -0.637 19.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.279 6.279 3 C 0.392 3.608 4 O -0.408 6.408 5 C -0.159 4.159 6 C -0.125 4.125 7 C -0.196 4.196 8 C -0.110 4.110 9 C 0.291 3.709 10 O -0.507 6.507 11 N -0.191 5.191 12 C -0.461 4.461 13 H 0.084 0.916 14 C -0.204 4.204 15 N -0.553 5.553 16 Si 0.773 3.227 17 H -0.176 1.176 18 H -0.194 1.194 19 H -0.152 1.152 20 N -0.061 5.061 21 C -0.079 4.079 22 H 0.086 0.914 23 H 0.152 0.848 24 H 0.085 0.915 25 H 0.197 0.803 26 H 0.192 0.808 27 H 0.230 0.770 28 H 0.095 0.905 29 H 0.104 0.896 30 H 0.131 0.869 31 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -18.295 6.155 -0.665 19.314 hybrid contribution 0.487 0.444 0.062 0.662 sum -17.809 6.599 -0.603 19.002 Atomic orbital electron populations 1.23643 0.73676 1.06028 1.03002 1.86619 1.25880 1.31332 1.84023 1.19750 0.86459 0.82074 0.72487 1.90853 1.65633 1.36450 1.47888 1.19745 0.87187 0.88238 1.20777 1.21450 0.91331 0.97569 1.02192 1.21620 0.98501 0.91537 1.07967 1.20435 0.84645 0.94151 1.11814 1.17038 0.82751 0.86794 0.84325 1.90599 1.86859 1.15678 1.57563 1.41557 1.04780 1.08754 1.63999 1.19037 0.84364 0.92443 1.50233 0.91567 1.26109 0.93545 1.05490 0.95237 1.69703 0.99348 1.39065 1.47175 0.85521 0.80258 0.76322 0.80648 1.17582 1.19394 1.15240 1.44010 1.04074 1.07749 1.50266 1.22560 1.03509 0.76921 1.04908 0.91428 0.84803 0.91476 0.80313 0.80843 0.77044 0.90527 0.89614 0.86939 0.89080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.57 113.37 1.20 1.61 16 2 O -0.36 -8.06 8.06 -57.45 -0.46 -8.53 16 3 C 0.55 14.90 7.93 70.13 0.56 15.45 16 4 O -0.52 -15.46 16.67 19.65 0.33 -15.13 16 5 C -0.05 -1.38 6.87 40.62 0.28 -1.10 16 6 C -0.10 -2.72 10.60 22.50 0.24 -2.48 16 7 C -0.17 -5.11 10.31 22.50 0.23 -4.88 16 8 C 0.01 0.38 6.87 40.67 0.28 0.66 16 9 C 0.50 23.51 7.74 86.57 0.67 24.18 16 10 O -0.62 -33.42 14.07 -4.28 -0.06 -33.48 16 11 N -0.55 -26.07 5.06 -310.30 -1.57 -27.65 16 12 C -0.33 -18.77 10.16 84.17 0.85 -17.91 16 13 H 0.07 4.42 7.39 -2.91 -0.02 4.39 16 14 C 0.00 -0.11 5.50 85.00 0.47 0.36 16 15 N -0.91 -52.52 13.95 21.70 0.30 -52.21 16 16 Si 0.95 36.75 27.74 68.60 1.90 38.65 16 17 H -0.25 -9.17 7.11 99.48 0.71 -8.46 16 18 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 19 H -0.23 -7.47 6.52 99.48 0.65 -6.82 16 20 N -0.39 -12.91 3.18 -520.51 -1.65 -14.56 16 21 C 0.06 1.80 10.01 127.77 1.28 3.08 16 22 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 23 H 0.13 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.18 3.87 8.06 -2.91 -0.02 3.85 16 26 H 0.17 4.22 7.42 -2.91 -0.02 4.20 16 27 H 0.39 15.49 4.63 -92.71 -0.43 15.06 16 28 H 0.28 14.85 8.31 -92.71 -0.77 14.08 16 29 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.11 2.68 6.43 -2.38 -0.02 2.67 16 31 H 0.09 3.23 5.91 -2.39 -0.01 3.21 16 Total: -1.00 -71.66 276.71 5.53 -66.13 By element: Atomic # 1 Polarization: 27.12 SS G_CDS: 0.69 Total: 27.81 kcal Atomic # 6 Polarization: 12.92 SS G_CDS: 6.06 Total: 18.97 kcal Atomic # 7 Polarization: -91.50 SS G_CDS: -2.92 Total: -94.42 kcal Atomic # 8 Polarization: -56.94 SS G_CDS: -0.20 Total: -57.14 kcal Atomic # 14 Polarization: 36.75 SS G_CDS: 1.90 Total: 38.65 kcal Total: -71.66 5.53 -66.13 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292867571.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.997 kcal (2) G-P(sol) polarization free energy of solvation -71.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds