Wall clock time and date at job start Sun Mar 29 2020 22:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 119.99828 * 2 1 4 4 H 1.48502 * 109.47043 * 269.99936 * 3 2 1 5 5 H 1.48493 * 109.47064 * 30.00051 * 3 2 1 6 6 H 1.48501 * 109.46930 * 150.00281 * 3 2 1 7 7 C 1.38815 * 120.00130 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99810 * 200.48891 * 7 2 1 9 9 N 1.36942 * 120.00023 * 20.48881 * 7 2 1 10 10 C 1.46506 * 119.99741 * 38.10675 * 9 7 2 11 11 C 1.50699 * 109.46829 * 90.00226 * 10 9 7 12 12 C 1.38707 * 120.78228 * 89.99736 * 11 10 9 13 13 C 1.38148 * 119.19628 * 179.97438 * 12 11 10 14 14 N 1.31909 * 120.77854 * 0.02562 * 13 12 11 15 15 C 1.31949 * 121.70746 * 359.97438 * 14 13 12 16 16 Cl 1.73599 * 119.63337 * 179.72542 * 15 14 13 17 17 C 1.38397 * 120.72949 * 359.97438 * 15 14 13 18 18 C 1.46500 * 119.99949 * 218.10874 * 9 7 2 19 19 C 1.52995 * 117.49733 * 13.99549 * 18 9 7 20 20 C 1.53001 * 117.49424 * 305.33460 * 18 9 7 21 21 H 0.96993 * 120.00548 * 354.97181 * 1 2 3 22 22 H 1.08992 * 109.47087 * 330.00134 * 10 9 7 23 23 H 1.08999 * 109.46620 * 209.99739 * 10 9 7 24 24 H 1.08001 * 120.40660 * 359.97438 * 12 11 10 25 25 H 1.08000 * 119.61111 * 179.97438 * 13 12 11 26 26 H 1.08006 * 120.41997 * 180.02562 * 17 15 14 27 27 H 1.09000 * 115.54876 * 159.66696 * 18 9 7 28 28 H 1.08998 * 117.50016 * 359.97438 * 19 18 9 29 29 H 1.09001 * 117.50114 * 145.02656 * 19 18 9 30 30 H 1.09005 * 117.49200 * 214.97823 * 20 18 9 31 31 H 1.08994 * 117.50515 * 359.97438 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0390 -1.2318 0.3268 9 7 1.3906 -2.3504 -0.4162 10 6 0.4592 -2.3122 -1.5464 11 6 1.2141 -2.5553 -2.8278 12 6 1.3844 -3.8416 -3.3182 13 6 2.0817 -4.0268 -4.4964 14 7 2.5830 -2.9983 -5.1528 15 6 2.4409 -1.7611 -4.7166 16 17 3.1291 -0.4481 -5.6199 17 6 1.7535 -1.4992 -3.5443 18 6 1.6590 -3.6170 0.2694 19 6 2.3676 -3.5508 1.6238 20 6 3.1187 -4.0591 0.3906 21 1 -0.4850 0.8367 0.0736 22 1 -0.0219 -1.3350 -1.5879 23 1 -0.2987 -3.0852 -1.4189 24 1 0.9768 -4.6881 -2.7856 25 1 2.2186 -5.0254 -4.8841 26 1 1.6398 -0.4845 -3.1921 27 1 0.9073 -4.3943 0.1321 28 1 2.6345 -2.5650 2.0045 29 1 2.0825 -4.2849 2.3774 30 1 3.3273 -5.1275 0.3334 31 1 3.8792 -3.4080 -0.0401 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299498058.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:19 Heat of formation + Delta-G solvation = 72.640679 kcal Electronic energy + Delta-G solvation = -16338.508455 eV Core-core repulsion = 13647.253968 eV Total energy + Delta-G solvation = -2691.254487 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 252.072 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.72031 -37.15760 -36.23622 -34.11563 -32.36917 -30.54126 -30.15011 -26.23335 -24.02572 -23.04146 -21.46238 -21.36707 -19.97812 -16.93414 -16.22821 -15.92883 -15.39444 -15.27774 -14.55638 -14.00091 -13.95585 -13.61467 -13.05182 -12.46159 -12.02528 -11.56772 -11.34725 -11.19964 -11.01624 -10.92891 -10.77516 -10.67722 -10.44057 -10.12659 -9.78185 -9.52584 -9.20461 -8.99059 -8.61174 -8.52633 -6.68005 -6.02487 -3.58216 1.42450 1.70595 2.21215 3.25416 3.34098 3.35991 4.09396 4.31485 4.84782 4.88349 5.11837 5.18918 5.39025 5.46370 5.60013 5.75296 5.80088 6.00207 6.07090 6.11860 6.35214 6.40594 6.49645 6.54789 6.87947 6.93036 7.01837 7.09265 7.35436 7.66862 8.12646 8.31756 8.94768 9.56127 10.12533 10.99096 Molecular weight = 252.07amu Principal moments of inertia in cm(-1) A = 0.016436 B = 0.009860 C = 0.007077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.216145 B = 2839.012274 C = 3955.517728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.020 3.980 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.263 4.263 8 H 0.064 0.936 9 N -0.539 5.539 10 C 0.174 3.826 11 C -0.019 4.019 12 C -0.168 4.168 13 C 0.103 3.897 14 N -0.499 5.499 15 C 0.168 3.832 16 Cl -0.053 7.053 17 C -0.131 4.131 18 C 0.126 3.874 19 C -0.192 4.192 20 C -0.226 4.226 21 H 0.261 0.739 22 H 0.112 0.888 23 H 0.046 0.954 24 H 0.132 0.868 25 H 0.154 0.846 26 H 0.141 0.859 27 H 0.090 0.910 28 H 0.099 0.901 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.246 -5.524 -5.163 7.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.181 4.181 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.214 1.214 6 H -0.200 1.200 7 C -0.392 4.392 8 H 0.081 0.919 9 N -0.254 5.254 10 C 0.048 3.952 11 C -0.031 4.031 12 C -0.189 4.189 13 C -0.053 4.053 14 N -0.211 5.211 15 C 0.004 3.996 16 Cl -0.025 7.025 17 C -0.153 4.153 18 C 0.017 3.983 19 C -0.231 4.231 20 C -0.267 4.267 21 H 0.071 0.929 22 H 0.129 0.871 23 H 0.065 0.935 24 H 0.150 0.850 25 H 0.171 0.829 26 H 0.159 0.841 27 H 0.107 0.893 28 H 0.118 0.882 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.590 -5.356 -6.038 8.227 hybrid contribution 0.326 1.074 0.723 1.335 sum 1.916 -4.282 -5.315 7.089 Atomic orbital electron populations 1.69864 1.05593 1.26606 1.50316 1.25225 0.95105 0.98807 0.98967 0.86402 0.79617 0.83196 0.78376 1.20616 1.21400 1.20036 1.18953 0.94374 0.84687 1.41229 0.91859 1.43275 1.50768 1.02840 1.28491 1.20140 0.90069 1.04188 0.80792 1.21771 0.94147 0.91420 0.95744 1.22097 1.01302 0.98072 0.97410 1.22428 0.94193 0.96424 0.92274 1.66848 1.21204 0.98449 1.34599 1.21587 0.97354 0.88676 0.91954 1.98362 1.83853 1.44643 1.75635 1.21798 0.98413 1.01939 0.93158 1.21138 0.91567 0.90312 0.95287 1.23086 1.06429 1.02189 0.91417 1.23365 0.99734 0.99062 1.04501 0.92907 0.87103 0.93534 0.85020 0.82863 0.84142 0.89265 0.88223 0.90654 0.90846 0.89811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.28 11.45 55.49 0.64 -22.64 16 2 C 0.02 0.52 4.97 -17.43 -0.09 0.43 16 3 Si 0.90 20.44 29.60 -169.99 -5.03 15.41 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.26 -6.61 8.04 -15.06 -0.12 -6.73 16 8 H 0.06 1.65 7.23 -52.49 -0.38 1.27 16 9 N -0.54 -12.24 2.76 -167.02 -0.46 -12.70 16 10 C 0.17 3.67 5.51 -5.19 -0.03 3.64 16 11 C -0.02 -0.37 5.50 -104.33 -0.57 -0.94 16 12 C -0.17 -2.72 9.82 -39.44 -0.39 -3.11 16 13 C 0.10 1.61 11.18 -17.55 -0.20 1.41 16 14 N -0.50 -8.96 10.34 -10.36 -0.11 -9.06 16 15 C 0.17 3.12 7.27 -17.44 -0.13 3.00 16 16 Cl -0.05 -0.90 29.11 -51.86 -1.51 -2.41 16 17 C -0.13 -2.57 9.58 -39.40 -0.38 -2.95 16 18 C 0.13 2.51 6.61 -67.93 -0.45 2.06 16 19 C -0.19 -3.67 9.81 -26.69 -0.26 -3.93 16 20 C -0.23 -4.16 10.09 -26.69 -0.27 -4.43 16 21 H 0.26 6.68 8.32 -40.82 -0.34 6.34 16 22 H 0.11 2.65 5.48 -51.93 -0.28 2.36 16 23 H 0.05 0.90 8.00 -51.93 -0.42 0.49 16 24 H 0.13 1.82 8.06 -52.49 -0.42 1.40 16 25 H 0.15 1.82 8.06 -52.49 -0.42 1.40 16 26 H 0.14 2.91 8.06 -52.48 -0.42 2.48 16 27 H 0.09 1.60 8.10 -51.93 -0.42 1.18 16 28 H 0.10 2.12 6.95 -51.93 -0.36 1.76 16 29 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 31 H 0.08 1.70 8.00 -51.93 -0.42 1.28 16 LS Contribution 285.51 15.07 4.30 4.30 Total: -1.00 -26.62 285.51 -8.58 -35.20 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -3.53 Total: 3.46 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: -2.88 Total: -11.55 kcal Atomic # 7 Polarization: -44.48 SS G_CDS: 0.07 Total: -44.41 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.03 Total: 15.41 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -1.51 Total: -2.41 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -26.62 -8.58 -35.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299498058.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.840 kcal (2) G-P(sol) polarization free energy of solvation -26.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds