Wall clock time and date at job start Sun Mar 29 2020 22:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 119.99828 * 2 1 4 4 H 1.48502 * 109.47043 * 269.99936 * 3 2 1 5 5 H 1.48493 * 109.47064 * 30.00051 * 3 2 1 6 6 H 1.48501 * 109.46930 * 150.00281 * 3 2 1 7 7 C 1.38815 * 120.00130 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99810 * 200.48891 * 7 2 1 9 9 N 1.36942 * 120.00023 * 20.48881 * 7 2 1 10 10 C 1.46506 * 119.99741 * 38.10675 * 9 7 2 11 11 C 1.50699 * 109.46829 * 90.00226 * 10 9 7 12 12 C 1.38707 * 120.78228 * 89.99736 * 11 10 9 13 13 C 1.38148 * 119.19628 * 179.97438 * 12 11 10 14 14 N 1.31909 * 120.77854 * 0.02562 * 13 12 11 15 15 C 1.31949 * 121.70746 * 359.97438 * 14 13 12 16 16 Cl 1.73599 * 119.63337 * 179.72542 * 15 14 13 17 17 C 1.38397 * 120.72949 * 359.97438 * 15 14 13 18 18 C 1.46500 * 119.99949 * 218.10874 * 9 7 2 19 19 C 1.52995 * 117.49733 * 13.99549 * 18 9 7 20 20 C 1.53001 * 117.49424 * 305.33460 * 18 9 7 21 21 H 0.96993 * 120.00548 * 354.97181 * 1 2 3 22 22 H 1.08992 * 109.47087 * 330.00134 * 10 9 7 23 23 H 1.08999 * 109.46620 * 209.99739 * 10 9 7 24 24 H 1.08001 * 120.40660 * 359.97438 * 12 11 10 25 25 H 1.08000 * 119.61111 * 179.97438 * 13 12 11 26 26 H 1.08006 * 120.41997 * 180.02562 * 17 15 14 27 27 H 1.09000 * 115.54876 * 159.66696 * 18 9 7 28 28 H 1.08998 * 117.50016 * 359.97438 * 19 18 9 29 29 H 1.09001 * 117.50114 * 145.02656 * 19 18 9 30 30 H 1.09005 * 117.49200 * 214.97823 * 20 18 9 31 31 H 1.08994 * 117.50515 * 359.97438 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0390 -1.2318 0.3268 9 7 1.3906 -2.3504 -0.4162 10 6 0.4592 -2.3122 -1.5464 11 6 1.2141 -2.5553 -2.8278 12 6 1.3844 -3.8416 -3.3182 13 6 2.0817 -4.0268 -4.4964 14 7 2.5830 -2.9983 -5.1528 15 6 2.4409 -1.7611 -4.7166 16 17 3.1291 -0.4481 -5.6199 17 6 1.7535 -1.4992 -3.5443 18 6 1.6590 -3.6170 0.2694 19 6 2.3676 -3.5508 1.6238 20 6 3.1187 -4.0591 0.3906 21 1 -0.4850 0.8367 0.0736 22 1 -0.0219 -1.3350 -1.5879 23 1 -0.2987 -3.0852 -1.4189 24 1 0.9768 -4.6881 -2.7856 25 1 2.2186 -5.0254 -4.8841 26 1 1.6398 -0.4845 -3.1921 27 1 0.9073 -4.3943 0.1321 28 1 2.6345 -2.5650 2.0045 29 1 2.0825 -4.2849 2.3774 30 1 3.3273 -5.1275 0.3334 31 1 3.8792 -3.4080 -0.0401 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299498058.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:19 Heat of formation + Delta-G solvation = 59.218646 kcal Electronic energy + Delta-G solvation = -16339.090478 eV Core-core repulsion = 13647.253968 eV Total energy + Delta-G solvation = -2691.836510 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 252.072 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.10822 -38.75322 -37.61038 -35.70511 -34.05930 -31.94654 -31.80045 -27.94507 -25.73067 -24.40835 -22.94395 -22.83116 -21.65559 -18.59459 -17.73297 -17.45523 -17.01641 -16.63640 -16.31066 -15.64609 -15.40191 -14.94130 -14.68594 -14.03463 -13.63936 -13.17093 -12.93215 -12.72521 -12.69055 -12.59766 -12.32233 -12.20148 -12.13858 -11.87829 -11.44721 -11.00776 -10.60208 -10.54104 -10.41293 -9.87371 -8.48626 -7.91784 -5.51116 0.05533 0.30096 0.83443 1.39437 1.45311 1.49870 2.41820 2.74545 3.12123 3.43208 3.56948 3.62703 3.96868 4.08578 4.25601 4.30844 4.35748 4.49213 4.57405 4.69603 4.86609 4.96833 5.05167 5.10714 5.35502 5.41676 5.56340 5.60201 5.67126 5.75224 6.42836 6.78208 7.09114 7.76856 8.26965 9.04867 Molecular weight = 252.07amu Principal moments of inertia in cm(-1) A = 0.016436 B = 0.009860 C = 0.007077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.216145 B = 2839.012274 C = 3955.517728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.017 4.017 3 Si 0.938 3.062 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.275 1.275 7 C -0.259 4.259 8 H 0.047 0.953 9 N -0.555 5.555 10 C 0.179 3.821 11 C -0.031 4.031 12 C -0.156 4.156 13 C 0.113 3.887 14 N -0.508 5.508 15 C 0.158 3.842 16 Cl -0.046 7.046 17 C -0.150 4.150 18 C 0.108 3.892 19 C -0.196 4.196 20 C -0.206 4.206 21 H 0.257 0.743 22 H 0.078 0.922 23 H 0.063 0.937 24 H 0.164 0.836 25 H 0.200 0.800 26 H 0.117 0.883 27 H 0.117 0.883 28 H 0.068 0.932 29 H 0.104 0.896 30 H 0.108 0.892 31 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.617 -8.028 -5.758 10.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.215 4.215 3 Si 0.766 3.234 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.200 1.200 7 C -0.390 4.390 8 H 0.064 0.936 9 N -0.271 5.271 10 C 0.053 3.947 11 C -0.042 4.042 12 C -0.177 4.177 13 C -0.043 4.043 14 N -0.221 5.221 15 C -0.004 4.004 16 Cl -0.017 7.017 17 C -0.172 4.172 18 C 0.000 4.000 19 C -0.234 4.234 20 C -0.247 4.247 21 H 0.066 0.934 22 H 0.096 0.904 23 H 0.081 0.919 24 H 0.182 0.818 25 H 0.217 0.783 26 H 0.135 0.865 27 H 0.135 0.865 28 H 0.087 0.913 29 H 0.123 0.877 30 H 0.126 0.874 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.976 -7.868 -6.641 10.484 hybrid contribution 0.232 1.751 0.870 1.968 sum 2.209 -6.117 -5.771 8.695 Atomic orbital electron populations 1.69950 1.06324 1.26592 1.52113 1.25641 0.95592 1.00661 0.99649 0.85738 0.78682 0.80998 0.77979 1.20841 1.21489 1.20045 1.18898 0.93680 0.86004 1.40371 0.93567 1.43408 1.50785 1.03173 1.29733 1.19949 0.90270 1.02999 0.81490 1.21597 0.94474 0.92804 0.95363 1.22386 1.00358 0.97449 0.97480 1.23191 0.92157 0.97579 0.91409 1.66978 1.21603 0.98466 1.35020 1.21599 0.97568 0.89425 0.91853 1.98355 1.83655 1.44461 1.75266 1.21674 0.99981 1.01235 0.94299 1.21452 0.93097 0.89826 0.95603 1.23084 1.06677 1.01562 0.92107 1.23289 0.97878 1.00397 1.03093 0.93370 0.90386 0.91853 0.81845 0.78314 0.86514 0.86543 0.91342 0.87737 0.87404 0.92320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.17 11.45 21.65 0.25 -48.93 16 2 C -0.02 -0.87 4.97 84.86 0.42 -0.45 16 3 Si 0.94 43.13 29.60 68.60 2.03 45.16 16 4 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 5 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 6 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 7 C -0.26 -13.29 8.04 84.03 0.68 -12.62 16 8 H 0.05 2.49 7.23 -2.91 -0.02 2.47 16 9 N -0.55 -25.04 2.76 -682.35 -1.89 -26.93 16 10 C 0.18 7.48 5.51 85.63 0.47 7.95 16 11 C -0.03 -1.16 5.50 -19.68 -0.11 -1.27 16 12 C -0.16 -4.52 9.82 22.36 0.22 -4.30 16 13 C 0.11 3.06 11.18 84.66 0.95 4.01 16 14 N -0.51 -17.01 10.34 -186.69 -1.93 -18.94 16 15 C 0.16 5.78 7.27 84.71 0.62 6.40 16 16 Cl -0.05 -1.53 29.11 -2.72 -0.08 -1.61 16 17 C -0.15 -5.92 9.58 22.38 0.21 -5.70 16 18 C 0.11 4.07 6.61 44.99 0.30 4.37 16 19 C -0.20 -7.13 9.81 30.62 0.30 -6.83 16 20 C -0.21 -7.07 10.09 30.62 0.31 -6.76 16 21 H 0.26 13.57 8.32 -92.71 -0.77 12.80 16 22 H 0.08 3.83 5.48 -2.39 -0.01 3.82 16 23 H 0.06 2.36 8.00 -2.39 -0.02 2.34 16 24 H 0.16 3.67 8.06 -2.91 -0.02 3.65 16 25 H 0.20 3.54 8.06 -2.91 -0.02 3.52 16 26 H 0.12 5.08 8.06 -2.91 -0.02 5.06 16 27 H 0.12 3.73 8.10 -2.39 -0.02 3.71 16 28 H 0.07 2.93 6.95 -2.39 -0.02 2.91 16 29 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 30 H 0.11 2.97 8.14 -2.38 -0.02 2.95 16 31 H 0.06 2.32 8.00 -2.39 -0.02 2.30 16 Total: -1.00 -58.18 285.51 3.88 -54.30 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: 1.13 Total: 12.15 kcal Atomic # 6 Polarization: -19.58 SS G_CDS: 4.36 Total: -15.21 kcal Atomic # 7 Polarization: -91.23 SS G_CDS: -3.57 Total: -94.79 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Atomic # 17 Polarization: -1.53 SS G_CDS: -0.08 Total: -1.61 kcal Total: -58.18 3.88 -54.30 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299498058.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.522 kcal (2) G-P(sol) polarization free energy of solvation -58.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds