Wall clock time and date at job start Sun Mar 29 2020 22:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99846 * 2 1 4 4 H 1.48502 * 109.47183 * 239.99785 * 3 2 1 5 5 H 1.48500 * 109.47261 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47103 * 120.00215 * 3 2 1 7 7 C 1.37870 * 120.00160 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00392 * 172.07502 * 7 2 1 9 9 C 1.50699 * 119.99988 * 352.06844 * 7 2 1 10 10 C 1.53000 * 115.55968 * 84.49043 * 9 7 2 11 11 N 1.46497 * 109.47254 * 39.88226 * 10 9 7 12 12 C 1.39065 * 120.00057 * 186.72900 * 11 10 9 13 13 C 1.39119 * 119.69438 * 359.72090 * 12 11 10 14 14 C 1.38303 * 119.11421 * 179.73607 * 13 12 11 15 15 C 1.38973 * 118.49223 * 0.53200 * 14 13 12 16 16 Cl 1.73598 * 120.34799 * 179.75126 * 15 14 13 17 17 C 1.38129 * 119.30191 * 359.73579 * 15 14 13 18 18 N 1.31976 * 120.84154 * 359.97438 * 17 15 14 19 19 C 1.53002 * 117.49958 * 298.80354 * 9 7 2 20 20 C 1.53010 * 60.02908 * 252.49526 * 19 9 7 21 21 H 0.97004 * 120.00057 * 5.01965 * 1 2 3 22 22 H 1.08999 * 109.47310 * 159.88438 * 10 9 7 23 23 H 1.09007 * 109.46846 * 279.88381 * 10 9 7 24 24 H 0.97002 * 119.99840 * 6.72451 * 11 10 9 25 25 H 1.08006 * 120.44172 * 0.02562 * 13 12 11 26 26 H 1.08000 * 120.75753 * 180.26757 * 14 13 12 27 27 H 1.07999 * 119.57657 * 179.97438 * 17 15 14 28 28 H 1.08998 * 117.49986 * 359.97438 * 19 9 7 29 29 H 1.08995 * 117.49707 * 145.00062 * 19 9 7 30 30 H 1.08999 * 117.49675 * 107.50103 * 20 19 9 31 31 H 1.09003 * 117.49433 * 252.51814 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0768 -1.1984 -0.1295 9 6 1.2619 -2.4929 0.1790 10 6 0.6582 -3.0895 -1.0940 11 7 1.5940 -2.9136 -2.2072 12 6 1.2082 -3.2511 -3.5000 13 6 -0.0660 -3.7608 -3.7280 14 6 -0.4391 -4.0873 -5.0191 15 6 0.4830 -3.9028 -6.0423 16 17 0.0679 -4.3028 -7.6798 17 6 1.7332 -3.3975 -5.7428 18 7 2.0588 -3.0894 -4.5015 19 6 0.4922 -2.6919 1.4863 20 6 1.7871 -3.4676 1.2360 21 1 -0.4850 0.8369 -0.0735 22 1 0.4689 -4.1523 -0.9429 23 1 -0.2791 -2.5826 -1.3237 24 1 2.4828 -2.5616 -2.0426 25 1 -0.7564 -3.8952 -2.9083 26 1 -1.4232 -4.4808 -5.2269 27 1 2.4533 -3.2527 -6.5345 28 1 0.5234 -1.8834 2.2167 29 1 -0.4443 -3.2475 1.4394 30 1 2.6699 -3.1693 1.8016 31 1 1.7023 -4.5335 1.0241 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308878322.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:59 Heat of formation + Delta-G solvation = 38.040947 kcal Electronic energy + Delta-G solvation = -15808.283759 eV Core-core repulsion = 13115.528915 eV Total energy + Delta-G solvation = -2692.754844 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 252.072 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.12937 -38.81101 -37.43602 -35.69058 -34.01138 -33.33003 -30.57416 -27.70207 -26.94840 -24.60205 -23.16774 -22.83075 -21.14404 -18.57884 -18.25883 -17.63707 -16.92521 -16.64255 -15.88086 -15.67466 -15.43801 -14.88125 -14.49183 -14.13512 -14.01994 -13.47619 -13.29602 -13.03272 -12.89683 -12.79203 -12.41382 -12.05981 -12.01553 -11.45945 -10.95437 -10.76998 -10.72495 -10.47891 -10.41228 -9.95525 -8.45286 -8.12947 -6.23346 0.28672 0.38546 1.26956 1.39779 1.41974 1.47019 2.35981 2.43605 2.88569 3.16452 3.48951 3.70621 3.93297 4.07813 4.20063 4.29619 4.52839 4.66032 4.70697 4.79102 4.93903 5.01262 5.03786 5.09361 5.27348 5.44417 5.60462 5.64938 5.75283 6.14698 6.38900 6.78465 6.83289 7.23577 7.45621 8.93714 Molecular weight = 252.07amu Principal moments of inertia in cm(-1) A = 0.026681 B = 0.005446 C = 0.004917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.198617 B = 5140.275611 C = 5693.138204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.037 3.963 3 Si 0.938 3.062 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.272 1.272 7 C -0.505 4.505 8 H 0.052 0.948 9 C 0.001 3.999 10 C 0.182 3.818 11 N -0.691 5.691 12 C 0.395 3.605 13 C -0.243 4.243 14 C -0.016 4.016 15 C -0.169 4.169 16 Cl -0.062 7.062 17 C 0.162 3.838 18 N -0.565 5.565 19 C -0.155 4.155 20 C -0.186 4.186 21 H 0.259 0.741 22 H 0.056 0.944 23 H 0.045 0.955 24 H 0.403 0.597 25 H 0.143 0.857 26 H 0.165 0.835 27 H 0.180 0.820 28 H 0.059 0.941 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.204 -8.561 -9.078 12.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.197 1.197 7 C -0.543 4.543 8 H 0.071 0.929 9 C 0.000 4.000 10 C 0.058 3.942 11 N -0.317 5.317 12 C 0.157 3.843 13 C -0.269 4.269 14 C -0.042 4.042 15 C -0.201 4.201 16 Cl -0.034 7.034 17 C 0.002 3.998 18 N -0.285 5.285 19 C -0.193 4.193 20 C -0.223 4.223 21 H 0.068 0.932 22 H 0.074 0.926 23 H 0.064 0.936 24 H 0.239 0.761 25 H 0.161 0.839 26 H 0.182 0.818 27 H 0.196 0.804 28 H 0.078 0.922 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.728 -8.155 -8.728 11.967 hybrid contribution -0.185 1.076 -0.014 1.092 sum -0.913 -7.079 -8.742 11.286 Atomic orbital electron populations 1.70032 1.06825 1.27265 1.49480 1.25500 0.95373 1.01335 0.94246 0.85934 0.78666 0.80338 0.78593 1.20320 1.21410 1.19727 1.20475 0.92991 0.89971 1.50828 0.92942 1.19110 0.99513 0.94327 0.87041 1.20768 0.91121 0.97016 0.85337 1.44762 1.17947 1.66535 1.02461 1.18865 0.89878 0.89307 0.86222 1.21530 0.96730 1.09808 0.98818 1.21445 0.99512 0.93210 0.90038 1.21576 0.97833 1.13476 0.87234 1.98324 1.93592 1.92908 1.18542 1.22695 0.93849 0.90774 0.92484 1.67343 1.36084 1.24944 1.00088 1.22443 0.94222 1.01166 1.01453 1.23106 0.97218 0.96571 1.05371 0.93188 0.92581 0.93649 0.76062 0.83925 0.81789 0.80353 0.92240 0.90068 0.90519 0.88778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.83 13.00 21.44 0.28 -48.55 16 2 C 0.04 1.94 5.38 84.65 0.46 2.39 16 3 Si 0.94 42.40 29.55 68.60 2.03 44.43 16 4 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 5 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 6 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 7 C -0.50 -25.46 7.52 25.60 0.19 -25.27 16 8 H 0.05 2.66 7.83 -2.91 -0.02 2.64 16 9 C 0.00 0.03 1.68 -52.90 -0.09 -0.05 16 10 C 0.18 7.32 5.05 86.38 0.44 7.75 16 11 N -0.69 -27.59 5.44 -345.04 -1.88 -29.47 16 12 C 0.40 14.56 7.65 133.04 1.02 15.57 16 13 C -0.24 -7.67 9.29 22.50 0.21 -7.46 16 14 C -0.02 -0.43 9.97 22.46 0.22 -0.20 16 15 C -0.17 -4.44 6.34 22.42 0.14 -4.30 16 16 Cl -0.06 -1.36 28.98 -2.72 -0.08 -1.43 16 17 C 0.16 4.67 10.97 84.65 0.93 5.60 16 18 N -0.57 -20.19 10.39 -193.15 -2.01 -22.20 16 19 C -0.15 -6.57 9.54 30.60 0.29 -6.27 16 20 C -0.19 -7.13 9.89 30.62 0.30 -6.82 16 21 H 0.26 13.73 8.32 -92.71 -0.77 12.96 16 22 H 0.06 1.97 7.95 -2.39 -0.02 1.95 16 23 H 0.05 2.01 7.57 -2.38 -0.02 1.99 16 24 H 0.40 17.11 7.72 -92.71 -0.72 16.39 16 25 H 0.14 4.27 6.68 -2.91 -0.02 4.25 16 26 H 0.16 3.28 8.06 -2.91 -0.02 3.25 16 27 H 0.18 4.10 8.06 -2.91 -0.02 4.08 16 28 H 0.06 2.78 8.14 -2.39 -0.02 2.76 16 29 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 30 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 31 H 0.09 3.10 8.08 -2.39 -0.02 3.08 16 Total: -1.00 -55.19 286.68 2.88 -52.31 By element: Atomic # 1 Polarization: 23.54 SS G_CDS: 0.43 Total: 23.97 kcal Atomic # 6 Polarization: -23.17 SS G_CDS: 4.11 Total: -19.06 kcal Atomic # 7 Polarization: -96.61 SS G_CDS: -3.61 Total: -100.22 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Atomic # 17 Polarization: -1.36 SS G_CDS: -0.08 Total: -1.43 kcal Total: -55.19 2.88 -52.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308878322.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.351 kcal (2) G-P(sol) polarization free energy of solvation -55.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds