Wall clock time and date at job start Sun Mar 29 2020 23:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35896 * 116.99594 * 2 1 4 4 C 1.38812 * 120.02140 * 0.27954 * 3 2 1 5 5 C 1.38173 * 120.09151 * 180.23036 * 4 3 2 6 6 C 1.38152 * 120.13093 * 359.49178 * 5 4 3 7 7 N 1.48009 * 119.98606 * 180.23056 * 6 5 4 8 8 O 1.21802 * 119.99780 * 353.88040 * 7 6 5 9 9 O 1.21799 * 120.00330 * 173.88072 * 7 6 5 10 10 C 1.38929 * 120.03348 * 0.25515 * 6 5 4 11 11 N 1.39672 * 120.04780 * 180.02562 * 10 6 5 12 12 C 1.46492 * 120.00188 * 185.74005 * 11 10 6 13 13 C 1.50704 * 109.47196 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00156 * 0.02562 * 13 12 11 15 15 C 1.37873 * 119.99972 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00165 * 0.02562 * 15 13 12 17 17 Si 1.86808 * 119.99911 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.46990 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47091 * 119.99907 * 17 15 13 20 20 H 1.48503 * 109.46865 * 239.99881 * 17 15 13 21 21 C 1.38579 * 120.01446 * 180.02562 * 3 2 1 22 22 H 1.08998 * 109.46849 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.46954 * 299.99323 * 1 2 3 24 24 H 1.08996 * 109.47230 * 59.99924 * 1 2 3 25 25 H 1.07998 * 119.95266 * 359.97438 * 4 3 2 26 26 H 1.08003 * 119.93089 * 179.76892 * 5 4 3 27 27 H 0.96999 * 119.99545 * 5.74310 * 11 10 6 28 28 H 1.09004 * 109.47491 * 300.00247 * 12 11 10 29 29 H 1.09002 * 109.46955 * 60.00566 * 12 11 10 30 30 H 0.97006 * 120.00262 * 180.02562 * 16 15 13 31 31 H 1.07993 * 120.06740 * 0.03923 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2902 2.3753 0.0059 5 6 1.9159 3.6072 0.0011 6 6 3.2953 3.6845 0.0010 7 7 3.9621 5.0058 0.0010 8 8 3.3002 6.0221 -0.1114 9 8 5.1728 5.0770 0.1134 10 6 4.0568 2.5225 0.0004 11 7 5.4514 2.6003 0.0009 12 6 6.2531 1.3809 -0.1266 13 6 7.7171 1.7369 -0.0977 14 1 8.0202 2.7683 0.0058 15 6 8.6698 0.7458 -0.2033 16 7 8.3009 -0.5101 -0.3298 17 14 10.4847 1.1871 -0.1668 18 1 10.6337 2.6571 -0.0181 19 1 11.1371 0.5044 0.9793 20 1 11.1257 0.7506 -1.4332 21 6 3.4298 1.2839 -0.0005 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 0.2118 2.3182 0.0100 26 1 1.3254 4.5115 0.0019 27 1 5.8890 3.4618 0.0857 28 1 6.0265 0.7088 0.7012 29 1 6.0172 0.8880 -1.0697 30 1 8.9712 -1.2075 -0.4037 31 1 4.0193 0.3790 -0.0016 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309859459.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:26:36 Heat of formation + Delta-G solvation = -14.661299 kcal Electronic energy + Delta-G solvation = -18105.932137 eV Core-core repulsion = 14970.182788 eV Total energy + Delta-G solvation = -3135.749349 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.094 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.75741 -40.11741 -37.96695 -36.29072 -34.99571 -32.74562 -31.10571 -29.83367 -27.76327 -26.63656 -25.35384 -23.51388 -21.91121 -21.22660 -18.76577 -18.40350 -18.26064 -17.08958 -16.84787 -16.06413 -15.87563 -15.26015 -14.97039 -14.15999 -14.02446 -13.67908 -13.30251 -13.13349 -12.42617 -12.38652 -12.17014 -11.40836 -11.14176 -11.07059 -11.00050 -10.90254 -10.76381 -10.59090 -10.23349 -9.90921 -9.49318 -8.67942 -8.62653 -7.27227 -6.29702 -4.35695 0.42271 1.51567 1.80531 1.97715 3.05469 3.20545 3.28344 3.33942 3.65930 3.97676 4.31821 4.59527 4.83696 4.97859 4.98123 5.08361 5.08770 5.25669 5.30544 5.72892 5.80913 6.03986 6.28343 6.31836 6.82757 6.86278 7.15800 7.23826 7.45076 7.76663 7.87458 8.10366 8.43366 8.73831 9.31401 10.80752 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.019599 B = 0.006463 C = 0.004881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.286299 B = 4331.575874 C = 5735.361560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.307 6.307 3 C 0.218 3.782 4 C -0.279 4.279 5 C 0.028 3.972 6 C -0.177 4.177 7 N 0.065 4.935 8 O -0.192 6.192 9 O -0.208 6.208 10 C 0.321 3.679 11 N -0.677 5.677 12 C 0.234 3.766 13 C -0.542 4.542 14 H 0.069 0.931 15 C 0.066 3.934 16 N -0.889 5.889 17 Si 0.907 3.093 18 H -0.269 1.269 19 H -0.281 1.281 20 H -0.281 1.281 21 C -0.240 4.240 22 H 0.101 0.899 23 H 0.058 0.942 24 H 0.059 0.941 25 H 0.139 0.861 26 H 0.146 0.854 27 H 0.418 0.582 28 H 0.033 0.967 29 H 0.033 0.967 30 H 0.267 0.733 31 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.371 1.677 0.657 15.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.219 6.219 3 C 0.169 3.831 4 C -0.301 4.301 5 C 0.009 3.991 6 C -0.270 4.270 7 N 0.567 4.433 8 O -0.401 6.401 9 O -0.405 6.405 10 C 0.197 3.803 11 N -0.306 5.306 12 C 0.113 3.887 13 C -0.581 4.581 14 H 0.087 0.913 15 C -0.138 4.138 16 N -0.526 5.526 17 Si 0.734 3.266 18 H -0.193 1.193 19 H -0.207 1.207 20 H -0.207 1.207 21 C -0.265 4.265 22 H 0.119 0.881 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.157 0.843 26 H 0.164 0.836 27 H 0.266 0.734 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.077 0.923 31 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -15.175 0.612 0.627 15.200 hybrid contribution 1.014 0.795 0.019 1.289 sum -14.161 1.408 0.647 14.246 Atomic orbital electron populations 1.23138 0.78040 1.04165 1.01675 1.86137 1.21691 1.26743 1.87298 1.18903 0.91645 0.84052 0.88495 1.20785 1.00148 0.90752 1.18393 1.20369 0.90647 0.98877 0.89222 1.20345 0.93088 0.80708 1.32835 1.43344 1.00550 1.02814 0.96593 1.94439 1.65132 1.25669 1.54888 1.94219 0.97128 1.92588 1.56589 1.17382 0.85908 0.90451 0.86553 1.47096 1.00918 1.15220 1.67340 1.19511 0.90169 0.81496 0.97489 1.21199 0.89651 0.94560 1.52644 0.91280 1.24921 0.99944 0.94628 0.94298 1.69946 1.34520 0.99667 1.48493 0.86288 0.83569 0.78965 0.77806 1.19312 1.20674 1.20686 1.19838 0.91669 0.97001 1.17967 0.88053 0.92297 0.92271 0.84306 0.83600 0.73407 0.94876 0.94922 0.92342 0.82762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 101.05 0.99 1.18 16 2 O -0.31 -3.99 10.49 -19.41 -0.20 -4.19 16 3 C 0.22 3.16 6.68 -39.24 -0.26 2.90 16 4 C -0.28 -3.45 9.04 -39.39 -0.36 -3.80 16 5 C 0.03 0.40 9.55 -39.64 -0.38 0.02 16 6 C -0.18 -3.14 6.86 -79.73 -0.55 -3.68 16 7 N 0.06 1.25 4.45 34.07 0.15 1.40 16 8 O -0.19 -3.58 18.46 -29.46 -0.54 -4.12 16 9 O -0.21 -4.36 15.70 -29.46 -0.46 -4.83 16 10 C 0.32 6.16 6.63 -83.81 -0.56 5.60 16 11 N -0.68 -14.80 5.60 -59.83 -0.34 -15.14 16 12 C 0.23 5.77 4.71 -5.20 -0.02 5.75 16 13 C -0.54 -14.61 9.28 -34.44 -0.32 -14.93 16 14 H 0.07 1.84 7.60 -52.49 -0.40 1.44 16 15 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 16 N -0.89 -24.92 13.29 55.43 0.74 -24.19 16 17 Si 0.91 20.81 29.54 -169.99 -5.02 15.78 16 18 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 C -0.24 -4.22 9.25 -39.24 -0.36 -4.59 16 22 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 23 H 0.06 0.38 7.65 -51.93 -0.40 -0.01 16 24 H 0.06 0.39 7.67 -51.93 -0.40 -0.01 16 25 H 0.14 1.22 6.29 -52.49 -0.33 0.89 16 26 H 0.15 1.70 7.62 -52.48 -0.40 1.30 16 27 H 0.42 9.30 4.76 -41.23 -0.20 9.10 16 28 H 0.03 0.85 7.73 -51.93 -0.40 0.45 16 29 H 0.03 0.85 8.13 -51.93 -0.42 0.43 16 30 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.15 2.87 6.73 -52.49 -0.35 2.52 16 LS Contribution 276.74 15.07 4.17 4.17 Total: -1.00 -29.39 276.74 -6.27 -35.67 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -2.85 Total: 5.31 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: -1.91 Total: -9.87 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.55 Total: -37.92 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: -1.21 Total: -13.14 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -29.39 -6.27 -35.67 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309859459.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.004 kcal (2) G-P(sol) polarization free energy of solvation -29.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds