Wall clock time and date at job start Sun Mar 29 2020 23:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35896 * 116.99594 * 2 1 4 4 C 1.38812 * 120.02140 * 0.27954 * 3 2 1 5 5 C 1.38173 * 120.09151 * 180.23036 * 4 3 2 6 6 C 1.38152 * 120.13093 * 359.49178 * 5 4 3 7 7 N 1.48009 * 119.98606 * 180.23056 * 6 5 4 8 8 O 1.21802 * 119.99780 * 353.88040 * 7 6 5 9 9 O 1.21799 * 120.00330 * 173.88072 * 7 6 5 10 10 C 1.38929 * 120.03348 * 0.25515 * 6 5 4 11 11 N 1.39672 * 120.04780 * 180.02562 * 10 6 5 12 12 C 1.46492 * 120.00188 * 185.74005 * 11 10 6 13 13 C 1.50704 * 109.47196 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00156 * 0.02562 * 13 12 11 15 15 C 1.37873 * 119.99972 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00165 * 0.02562 * 15 13 12 17 17 Si 1.86808 * 119.99911 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.46990 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47091 * 119.99907 * 17 15 13 20 20 H 1.48503 * 109.46865 * 239.99881 * 17 15 13 21 21 C 1.38579 * 120.01446 * 180.02562 * 3 2 1 22 22 H 1.08998 * 109.46849 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.46954 * 299.99323 * 1 2 3 24 24 H 1.08996 * 109.47230 * 59.99924 * 1 2 3 25 25 H 1.07998 * 119.95266 * 359.97438 * 4 3 2 26 26 H 1.08003 * 119.93089 * 179.76892 * 5 4 3 27 27 H 0.96999 * 119.99545 * 5.74310 * 11 10 6 28 28 H 1.09004 * 109.47491 * 300.00247 * 12 11 10 29 29 H 1.09002 * 109.46955 * 60.00566 * 12 11 10 30 30 H 0.97006 * 120.00262 * 180.02562 * 16 15 13 31 31 H 1.07993 * 120.06740 * 0.03923 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2902 2.3753 0.0059 5 6 1.9159 3.6072 0.0011 6 6 3.2953 3.6845 0.0010 7 7 3.9621 5.0058 0.0010 8 8 3.3002 6.0221 -0.1114 9 8 5.1728 5.0770 0.1134 10 6 4.0568 2.5225 0.0004 11 7 5.4514 2.6003 0.0009 12 6 6.2531 1.3809 -0.1266 13 6 7.7171 1.7369 -0.0977 14 1 8.0202 2.7683 0.0058 15 6 8.6698 0.7458 -0.2033 16 7 8.3009 -0.5101 -0.3298 17 14 10.4847 1.1871 -0.1668 18 1 10.6337 2.6571 -0.0181 19 1 11.1371 0.5044 0.9793 20 1 11.1257 0.7506 -1.4332 21 6 3.4298 1.2839 -0.0005 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 0.2118 2.3182 0.0100 26 1 1.3254 4.5115 0.0019 27 1 5.8890 3.4618 0.0857 28 1 6.0265 0.7088 0.7012 29 1 6.0172 0.8880 -1.0697 30 1 8.9712 -1.2075 -0.4037 31 1 4.0193 0.3790 -0.0016 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309859459.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:26:36 Heat of formation + Delta-G solvation = -33.619361 kcal Electronic energy + Delta-G solvation = -18106.754221 eV Core-core repulsion = 14970.182788 eV Total energy + Delta-G solvation = -3136.571433 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.094 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.21591 -41.29773 -39.24214 -37.74458 -36.58216 -34.67356 -32.35419 -31.32041 -29.04264 -27.99716 -26.69783 -25.26254 -23.27036 -22.72095 -20.19799 -19.79666 -19.54490 -18.58249 -18.53191 -17.52189 -16.77822 -16.77180 -16.51205 -15.69755 -15.40768 -15.30410 -14.55575 -14.34311 -14.08319 -13.80025 -13.30606 -12.84348 -12.83807 -12.60816 -12.34646 -12.33238 -12.29396 -12.08402 -11.93969 -11.49048 -11.35633 -10.69409 -9.81511 -8.81166 -8.37504 -6.51552 -0.97183 0.25145 0.45774 0.57907 1.38768 1.39408 1.53582 2.02611 2.30306 2.39300 2.58382 2.97953 3.37900 3.73148 3.88581 4.05430 4.36043 4.41978 4.46735 4.67352 4.75812 4.80126 4.89667 5.01416 5.12185 5.17117 5.39635 5.49305 5.75411 6.09585 6.23311 6.49159 6.63462 6.86355 7.20341 8.74066 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.019599 B = 0.006463 C = 0.004881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.286299 B = 4331.575874 C = 5735.361560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.323 6.323 3 C 0.235 3.765 4 C -0.249 4.249 5 C 0.037 3.963 6 C -0.188 4.188 7 N 0.063 4.937 8 O -0.156 6.156 9 O -0.269 6.269 10 C 0.301 3.699 11 N -0.701 5.701 12 C 0.258 3.742 13 C -0.564 4.564 14 H 0.064 0.936 15 C 0.017 3.983 16 N -0.920 5.920 17 Si 0.976 3.024 18 H -0.266 1.266 19 H -0.272 1.272 20 H -0.273 1.273 21 C -0.268 4.268 22 H 0.121 0.879 23 H 0.080 0.920 24 H 0.080 0.920 25 H 0.192 0.808 26 H 0.182 0.818 27 H 0.413 0.587 28 H 0.011 0.989 29 H 0.008 0.992 30 H 0.272 0.728 31 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.280 2.198 0.675 18.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.235 6.235 3 C 0.185 3.815 4 C -0.269 4.269 5 C 0.017 3.983 6 C -0.280 4.280 7 N 0.563 4.437 8 O -0.377 6.377 9 O -0.451 6.451 10 C 0.182 3.818 11 N -0.333 5.333 12 C 0.135 3.865 13 C -0.602 4.602 14 H 0.083 0.917 15 C -0.184 4.184 16 N -0.558 5.558 17 Si 0.800 3.200 18 H -0.191 1.191 19 H -0.197 1.197 20 H -0.198 1.198 21 C -0.292 4.292 22 H 0.139 0.861 23 H 0.099 0.901 24 H 0.098 0.902 25 H 0.209 0.791 26 H 0.199 0.801 27 H 0.261 0.739 28 H 0.029 0.971 29 H 0.026 0.974 30 H 0.081 0.919 31 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -18.034 1.083 0.661 18.078 hybrid contribution 1.487 0.575 0.002 1.594 sum -16.547 1.658 0.662 16.643 Atomic orbital electron populations 1.23634 0.74756 1.06434 1.03671 1.86151 1.24994 1.26018 1.86312 1.18952 0.90580 0.85738 0.86202 1.21304 1.02326 0.88748 1.14569 1.20865 0.88810 1.01003 0.87589 1.20654 0.94360 0.79232 1.33801 1.43584 1.00393 1.03436 0.96298 1.94380 1.64702 1.26160 1.52501 1.94241 0.98051 1.92882 1.59968 1.17629 0.84870 0.91848 0.87443 1.46744 1.02125 1.13521 1.70903 1.18940 0.89901 0.82366 0.95257 1.21525 0.91123 0.94575 1.52997 0.91749 1.25832 1.04548 0.94431 0.93572 1.70047 1.36153 1.00621 1.49024 0.85227 0.77848 0.78719 0.78210 1.19058 1.19737 1.19822 1.19769 0.93531 0.95649 1.20301 0.86050 0.90143 0.90181 0.79115 0.80084 0.73940 0.97078 0.97372 0.91899 0.85224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.81 113.37 1.11 1.20 16 2 O -0.32 -7.53 10.49 -92.38 -0.97 -8.50 16 3 C 0.24 6.30 6.68 22.49 0.15 6.45 16 4 C -0.25 -4.93 9.04 22.39 0.20 -4.73 16 5 C 0.04 0.88 9.55 22.23 0.21 1.09 16 6 C -0.19 -6.51 6.86 36.52 0.25 -6.26 16 7 N 0.06 2.45 4.45 -46.12 -0.21 2.24 16 8 O -0.16 -5.53 18.46 18.88 0.35 -5.18 16 9 O -0.27 -11.82 15.70 18.89 0.30 -11.52 16 10 C 0.30 12.01 6.63 38.20 0.25 12.26 16 11 N -0.70 -32.99 5.60 -343.19 -1.92 -34.91 16 12 C 0.26 13.75 4.71 85.64 0.40 14.16 16 13 C -0.56 -32.10 9.28 25.60 0.24 -31.86 16 14 H 0.06 3.63 7.60 -2.91 -0.02 3.60 16 15 C 0.02 0.94 5.46 84.65 0.46 1.40 16 16 N -0.92 -53.45 13.29 21.45 0.28 -53.16 16 17 Si 0.98 43.62 29.54 68.60 2.03 45.65 16 18 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 19 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 20 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 21 C -0.27 -9.71 9.25 22.49 0.21 -9.50 16 22 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 23 H 0.08 0.58 7.65 -2.39 -0.02 0.56 16 24 H 0.08 0.58 7.67 -2.39 -0.02 0.57 16 25 H 0.19 1.89 6.29 -2.91 -0.02 1.87 16 26 H 0.18 3.15 7.62 -2.91 -0.02 3.13 16 27 H 0.41 19.89 4.76 -99.25 -0.47 19.42 16 28 H 0.01 0.64 7.73 -2.39 -0.02 0.62 16 29 H 0.01 0.48 8.13 -2.39 -0.02 0.46 16 30 H 0.27 14.67 8.31 -92.70 -0.77 13.90 16 31 H 0.13 5.27 6.73 -2.91 -0.02 5.25 16 Total: -1.00 -68.04 276.74 4.05 -63.99 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: 0.70 Total: 17.19 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: 3.49 Total: -15.79 kcal Atomic # 7 Polarization: -83.99 SS G_CDS: -1.84 Total: -85.83 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -0.32 Total: -25.20 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -68.04 4.05 -63.99 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309859459.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.367 kcal (2) G-P(sol) polarization free energy of solvation -68.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds