Wall clock time and date at job start Sun Mar 29 2020 22:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00197 * 2 1 4 4 H 1.48498 * 109.47159 * 269.99964 * 3 2 1 5 5 H 1.48506 * 109.46952 * 29.99918 * 3 2 1 6 6 H 1.48506 * 109.47046 * 149.99436 * 3 2 1 7 7 C 1.37877 * 119.99762 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00355 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99953 * 179.97438 * 7 2 1 10 10 S 1.81403 * 109.47374 * 180.02562 * 9 7 2 11 11 C 1.81395 * 103.00155 * 174.94266 * 10 9 7 12 12 H 1.08999 * 110.26661 * 308.54220 * 11 10 9 13 13 C 1.54344 * 110.30198 * 70.71835 * 11 10 9 14 14 C 1.54525 * 102.30730 * 145.48401 * 13 11 10 15 15 C 1.51379 * 105.08371 * 333.30604 * 14 13 11 16 16 C 1.38513 * 130.35347 * 197.29226 * 15 14 13 17 17 C 1.38064 * 120.24971 * 180.29376 * 16 15 14 18 18 C 1.38475 * 119.90823 * 0.02725 * 17 16 15 19 19 F 1.35106 * 120.06377 * 180.02562 * 18 17 16 20 20 C 1.38329 * 119.87757 * 359.97438 * 18 17 16 21 21 C 1.38229 * 109.75454 * 17.57567 * 15 14 13 22 22 H 0.97007 * 119.99694 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46910 * 60.00840 * 9 7 2 24 24 H 1.09002 * 109.47149 * 300.00574 * 9 7 2 25 25 H 1.08995 * 110.82121 * 263.49812 * 13 11 10 26 26 H 1.08994 * 110.82325 * 26.85224 * 13 11 10 27 27 H 1.09002 * 110.26373 * 214.45209 * 14 13 11 28 28 H 1.08999 * 110.42072 * 92.24147 * 14 13 11 29 29 H 1.07997 * 119.88266 * 0.31944 * 16 15 14 30 30 H 1.08003 * 120.04948 * 180.02562 * 17 16 15 31 31 H 1.08003 * 119.90344 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 16 4.1162 -2.9044 0.0001 11 6 5.9120 -2.7023 -0.1564 12 1 6.1467 -2.0511 -0.9984 13 6 6.5020 -2.1274 1.1488 14 6 7.8804 -2.8221 1.2212 15 6 7.7078 -4.1201 0.4615 16 6 8.4812 -5.2692 0.4619 17 6 8.1286 -6.3451 -0.3281 18 6 6.9979 -6.2758 -1.1246 19 9 6.6497 -7.3270 -1.8985 20 6 6.2250 -5.1286 -1.1255 21 6 6.5788 -4.0498 -0.3329 22 1 -0.4850 0.8401 -0.0004 23 1 3.8752 -0.6798 0.8896 24 1 3.8745 -0.6808 -0.8905 25 1 6.6192 -1.0461 1.0776 26 1 5.8812 -2.3927 2.0044 27 1 8.1475 -3.0237 2.2586 28 1 8.6429 -2.2046 0.7465 29 1 9.3631 -5.3239 1.0828 30 1 8.7338 -7.2397 -0.3250 31 1 5.3429 -5.0742 -1.7462 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335235546.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:48:32 Heat of formation + Delta-G solvation = -48.252373 kcal Electronic energy + Delta-G solvation = -15438.397526 eV Core-core repulsion = 12724.024468 eV Total energy + Delta-G solvation = -2714.373058 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 252.068 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.91523 -40.99075 -36.43165 -35.22041 -32.50559 -31.49536 -29.80346 -28.30916 -24.72650 -23.91843 -22.17826 -21.98146 -19.14236 -18.27154 -17.74834 -17.24391 -16.70721 -16.50907 -16.34990 -15.84680 -15.18833 -14.76683 -14.66061 -14.55478 -14.12336 -13.98569 -13.49144 -13.31354 -12.90395 -12.70143 -12.54311 -12.20398 -12.08553 -11.85770 -11.75719 -11.65669 -10.91074 -10.67483 -9.94712 -9.41010 -8.55412 -8.38730 -6.49085 0.04217 0.17674 0.99696 1.33123 1.35503 1.46260 1.92460 2.28474 2.56027 2.94311 3.07140 3.41054 3.51113 3.94122 3.98476 4.12796 4.16820 4.23658 4.56897 4.60182 4.64884 4.75118 4.75908 4.91540 5.01122 5.12022 5.16930 5.22202 5.27329 5.32050 5.54363 5.89763 6.05346 6.54945 7.13511 8.77482 Molecular weight = 252.07amu Principal moments of inertia in cm(-1) A = 0.034364 B = 0.005304 C = 0.004732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.601538 B = 5277.747559 C = 5916.160366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.018 3.982 3 Si 0.955 3.045 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.240 1.240 7 C -0.533 4.533 8 H 0.031 0.969 9 C 0.055 3.945 10 S -0.302 6.302 11 C -0.020 4.020 12 H 0.102 0.898 13 C -0.116 4.116 14 C -0.067 4.067 15 C -0.095 4.095 16 C -0.073 4.073 17 C -0.141 4.141 18 C 0.075 3.925 19 F -0.149 7.149 20 C -0.147 4.147 21 C -0.065 4.065 22 H 0.273 0.727 23 H 0.048 0.952 24 H 0.038 0.962 25 H 0.092 0.908 26 H 0.076 0.924 27 H 0.104 0.896 28 H 0.107 0.893 29 H 0.172 0.828 30 H 0.165 0.835 31 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.014 -6.109 2.079 23.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.182 4.182 3 Si 0.777 3.223 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.163 1.163 7 C -0.571 4.571 8 H 0.049 0.951 9 C -0.093 4.093 10 S -0.072 6.072 11 C -0.148 4.148 12 H 0.120 0.880 13 C -0.155 4.155 14 C -0.104 4.104 15 C -0.097 4.097 16 C -0.090 4.090 17 C -0.160 4.160 18 C 0.056 3.944 19 F -0.128 7.128 20 C -0.167 4.167 21 C -0.067 4.067 22 H 0.082 0.918 23 H 0.066 0.934 24 H 0.056 0.944 25 H 0.111 0.889 26 H 0.094 0.906 27 H 0.123 0.877 28 H 0.125 0.875 29 H 0.190 0.810 30 H 0.183 0.817 31 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 22.192 -6.966 2.112 23.355 hybrid contribution -0.464 1.362 -0.740 1.619 sum 21.728 -5.604 1.372 22.481 Atomic orbital electron populations 1.70034 1.08418 1.28804 1.50800 1.25947 0.95686 1.03361 0.93175 0.85594 0.79669 0.77458 0.79601 1.18771 1.20199 1.16267 1.20699 0.89673 0.93704 1.53025 0.95060 1.21173 0.97893 0.90596 0.99668 1.87048 1.05592 1.17433 1.97101 1.22770 0.92425 0.96785 1.02834 0.88023 1.22797 0.96765 1.01276 0.94670 1.21122 0.96615 0.91252 1.01456 1.20985 0.94423 0.97155 0.97153 1.20831 1.00052 0.90063 0.98094 1.21386 0.95926 1.01730 0.96971 1.17693 0.97165 0.84430 0.95095 1.91469 1.92205 1.55544 1.73545 1.20665 1.00928 0.92987 1.02153 1.19831 0.96416 0.93340 0.97081 0.91826 0.93426 0.94361 0.88931 0.90574 0.87748 0.87479 0.81010 0.81702 0.86384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.79 13.96 21.45 0.30 -58.49 16 2 C 0.02 1.05 5.47 84.65 0.46 1.51 16 3 Si 0.96 42.33 27.47 68.60 1.88 44.21 16 4 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 5 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 6 H -0.24 -9.53 6.54 99.48 0.65 -8.88 16 7 C -0.53 -31.47 9.68 25.60 0.25 -31.23 16 8 H 0.03 2.11 7.96 -2.91 -0.02 2.08 16 9 C 0.05 2.60 4.73 71.24 0.34 2.93 16 10 S -0.30 -12.98 20.74 -56.49 -1.17 -14.15 16 11 C -0.02 -0.62 3.36 30.52 0.10 -0.51 16 12 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 13 C -0.12 -2.79 6.57 31.57 0.21 -2.59 16 14 C -0.07 -1.11 6.78 30.58 0.21 -0.90 16 15 C -0.10 -2.01 6.13 -19.58 -0.12 -2.13 16 16 C -0.07 -1.19 10.04 22.29 0.22 -0.97 16 17 C -0.14 -2.67 10.03 22.28 0.22 -2.44 16 18 C 0.08 1.97 7.30 22.35 0.16 2.13 16 19 F -0.15 -4.14 17.27 44.97 0.78 -3.37 16 20 C -0.15 -4.45 9.72 22.34 0.22 -4.23 16 21 C -0.07 -1.85 5.61 -19.60 -0.11 -1.96 16 22 H 0.27 15.65 8.31 -92.70 -0.77 14.88 16 23 H 0.05 2.14 7.20 -2.39 -0.02 2.12 16 24 H 0.04 1.73 7.57 -2.39 -0.02 1.71 16 25 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.08 2.07 7.88 -2.39 -0.02 2.05 16 27 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.17 1.44 8.06 -2.91 -0.02 1.42 16 30 H 0.17 2.09 8.06 -2.91 -0.02 2.07 16 31 H 0.12 3.94 8.06 -2.91 -0.02 3.91 16 Total: -1.00 -69.98 281.28 5.02 -64.96 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: 1.07 Total: 7.21 kcal Atomic # 6 Polarization: -42.55 SS G_CDS: 2.16 Total: -40.38 kcal Atomic # 7 Polarization: -58.79 SS G_CDS: 0.30 Total: -58.49 kcal Atomic # 9 Polarization: -4.14 SS G_CDS: 0.78 Total: -3.37 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 1.88 Total: 44.21 kcal Atomic # 16 Polarization: -12.98 SS G_CDS: -1.17 Total: -14.15 kcal Total: -69.98 5.02 -64.96 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335235546.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.704 kcal (2) G-P(sol) polarization free energy of solvation -69.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds